Wall clock time and date at job start Tue Mar 31 2020 11:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86792 * 120.00435 * 2 1 4 4 H 1.48495 * 109.47150 * 270.00190 * 3 2 1 5 5 H 1.48505 * 109.47122 * 30.00072 * 3 2 1 6 6 H 1.48502 * 109.47546 * 149.99789 * 3 2 1 7 7 C 1.38641 * 119.99489 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00476 * 359.97438 * 7 2 1 9 9 O 1.34816 * 119.99860 * 180.02562 * 7 2 1 10 10 C 1.35751 * 116.99974 * 185.05737 * 9 7 2 11 11 C 1.38925 * 119.99993 * 354.45164 * 10 9 7 12 12 C 1.37980 * 120.00220 * 180.27639 * 11 10 9 13 13 C 1.38935 * 119.99726 * 359.45586 * 12 11 10 14 14 N 1.40037 * 120.00057 * 180.29961 * 13 12 11 15 15 C 1.37910 * 120.15788 * 295.22234 * 14 13 12 16 16 N 1.32463 * 135.04353 * 0.03466 * 15 14 13 17 17 C 1.32807 * 108.70560 * 179.97438 * 16 15 14 18 18 N 1.31608 * 110.14410 * 359.97438 * 17 16 15 19 19 C 1.34344 * 108.19118 * 359.97438 * 18 17 16 20 20 C 1.40682 * 135.12905 * 180.02562 * 19 18 17 21 21 N 1.37312 * 120.36711 * 0.02562 * 20 19 18 22 22 N 1.33443 * 119.27191 * 179.97438 * 20 19 18 23 23 C 1.31234 * 121.95569 * 359.70884 * 22 20 19 24 24 F 1.35101 * 118.88688 * 180.30963 * 23 22 20 25 25 C 1.38939 * 120.00006 * 0.52512 * 13 12 11 26 26 C 1.37982 * 119.99301 * 359.74810 * 25 13 12 27 27 H 0.97003 * 119.99932 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.00309 * 0.02562 * 11 10 9 29 29 H 1.08004 * 119.99972 * 179.70592 * 12 11 10 30 30 H 1.07999 * 124.92528 * 180.02562 * 17 16 15 31 31 H 0.97000 * 119.99423 * 359.97438 * 21 20 19 32 32 H 0.96998 * 119.99960 * 179.97438 * 21 20 19 33 33 H 1.08001 * 120.00453 * 179.77467 * 25 13 12 34 34 H 1.08002 * 119.99508 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4472 2.6526 0.7001 6 1 3.5473 1.4400 0.7001 7 6 2.0088 -1.2007 -0.0005 8 1 1.4687 -2.1360 -0.0005 9 8 3.3569 -1.2008 0.0000 10 6 3.9732 -2.4056 -0.1072 11 6 3.2215 -3.5739 -0.0949 12 6 3.8483 -4.7987 -0.1981 13 6 5.2302 -4.8633 -0.3257 14 7 5.8659 -6.1061 -0.4368 15 6 5.8269 -7.0005 0.6123 16 7 5.2932 -7.0006 1.8246 17 6 5.5783 -8.1553 2.4154 18 7 6.2906 -8.9132 1.6091 19 6 6.4786 -8.2426 0.4603 20 6 7.1375 -8.5096 -0.7537 21 7 7.7847 -9.7057 -0.9438 22 7 7.1259 -7.5881 -1.7188 23 6 6.5118 -6.4375 -1.5732 24 9 6.5342 -5.5521 -2.5934 25 6 5.9820 -3.6949 -0.3384 26 6 5.3555 -2.4704 -0.2295 27 1 -0.4850 0.8401 0.0004 28 1 2.1468 -3.5236 -0.0005 29 1 3.2642 -5.7071 -0.1838 30 1 5.2697 -8.4324 3.4126 31 1 7.7894 -10.3719 -0.2388 32 1 8.2370 -9.8843 -1.7831 33 1 7.0566 -3.7451 -0.4340 34 1 5.9399 -1.5621 -0.2390 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212604919.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:47 Heat of formation + Delta-G solvation = 95.803214 kcal Electronic energy + Delta-G solvation = -24955.559492 eV Core-core repulsion = 20999.564597 eV Total energy + Delta-G solvation = -3955.994894 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.92285 -42.43383 -39.86857 -39.17689 -37.89560 -36.05334 -33.69180 -32.61354 -30.84873 -30.64341 -29.56604 -28.52092 -25.72075 -24.52356 -23.92330 -22.53567 -22.17044 -20.52822 -19.50379 -18.85678 -18.30687 -17.95540 -17.42374 -17.14802 -16.89138 -16.05658 -15.62900 -15.37696 -14.97212 -14.70014 -14.37800 -14.20081 -14.13689 -13.72856 -13.38398 -13.16798 -13.04430 -12.58511 -12.37243 -12.11063 -11.72488 -11.16598 -11.01991 -10.94917 -10.46946 -10.37267 -10.22495 -9.68471 -9.31037 -9.14620 -8.93247 -8.67901 -8.05204 -7.69423 -6.66934 -4.32980 -0.07618 1.27549 1.45204 1.60266 1.79032 2.47674 3.08108 3.12202 3.25319 3.30836 3.41404 3.60641 3.86925 4.03497 4.05718 4.32643 4.48836 4.74579 4.85229 5.03074 5.16559 5.24004 5.37181 5.67346 5.76354 5.89945 6.12569 6.31037 6.39189 6.46000 6.52642 6.71549 6.74646 6.88931 7.04385 7.21620 7.23955 7.31535 7.51431 7.74135 8.44623 8.65348 9.21454 10.38868 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.025690 B = 0.003292 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.642523 B = 8504.301458 C = 9101.613581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.068 3.932 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.393 4.393 8 H 0.112 0.888 9 O -0.196 6.196 10 C 0.178 3.822 11 C -0.213 4.213 12 C -0.020 4.020 13 C -0.050 4.050 14 N -0.360 5.360 15 C 0.243 3.757 16 N -0.519 5.519 17 C 0.199 3.801 18 N -0.506 5.506 19 C -0.122 4.122 20 C 0.556 3.444 21 N -0.791 5.791 22 N -0.584 5.584 23 C 0.596 3.404 24 F -0.052 7.052 25 C -0.047 4.047 26 C -0.180 4.180 27 H 0.285 0.715 28 H 0.146 0.854 29 H 0.118 0.882 30 H 0.200 0.800 31 H 0.429 0.571 32 H 0.413 0.587 33 H 0.120 0.880 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.943 -13.766 -3.968 19.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.138 4.138 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.468 4.468 8 H 0.129 0.871 9 O -0.098 6.098 10 C 0.122 3.878 11 C -0.232 4.232 12 C -0.039 4.039 13 C -0.140 4.140 14 N -0.046 5.046 15 C -0.009 4.009 16 N -0.242 5.242 17 C -0.093 4.093 18 N -0.227 5.227 19 C -0.261 4.261 20 C 0.308 3.692 21 N -0.328 5.328 22 N -0.322 5.322 23 C 0.321 3.679 24 F -0.031 7.031 25 C -0.066 4.066 26 C -0.200 4.200 27 H 0.095 0.905 28 H 0.163 0.837 29 H 0.136 0.864 30 H 0.217 0.783 31 H 0.263 0.737 32 H 0.244 0.756 33 H 0.138 0.862 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 13.919 -13.665 -3.928 19.897 hybrid contribution 0.005 0.816 0.011 0.816 sum 13.924 -12.848 -3.918 19.347 Atomic orbital electron populations 1.69640 1.05716 1.29158 1.45269 1.24541 0.95097 0.99187 0.94986 0.86149 0.80425 0.80981 0.79262 1.19536 1.20421 1.18096 1.20872 0.76427 0.97051 1.52430 0.87078 1.83566 1.23149 1.25784 1.77314 1.19207 0.91649 0.85496 0.91419 1.21138 1.01650 0.90705 1.09753 1.20582 0.91215 0.97953 0.94152 1.17414 0.92347 0.81435 1.22790 1.41353 1.39467 1.14780 1.09019 1.19517 1.02850 0.88030 0.90454 1.70184 1.25765 1.25133 1.03070 1.24979 0.97631 0.86699 0.99980 1.70514 1.19787 1.32325 1.00039 1.20027 1.12428 0.96418 0.97269 1.17390 0.82330 0.84524 0.84917 1.42167 1.54346 1.14479 1.21812 1.67219 1.31099 1.01831 1.32076 1.18047 0.87848 0.84344 0.77683 1.91865 1.93125 1.64555 1.53578 1.20450 0.98304 0.90362 0.97497 1.20004 0.91978 0.97249 1.10723 0.90512 0.83674 0.86369 0.78337 0.73720 0.75572 0.86188 0.85069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.37 13.96 55.48 0.77 -22.60 16 2 C 0.07 1.77 5.49 -17.52 -0.10 1.68 16 3 Si 0.91 20.09 28.62 -169.99 -4.86 15.22 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.26 -5.70 7.11 56.52 0.40 -5.29 16 7 C -0.39 -10.24 9.94 30.88 0.31 -9.93 16 8 H 0.11 2.95 5.43 -52.49 -0.28 2.66 16 9 O -0.20 -4.71 8.58 0.08 0.00 -4.71 16 10 C 0.18 3.72 6.65 -39.07 -0.26 3.46 16 11 C -0.21 -4.26 9.16 -39.42 -0.36 -4.62 16 12 C -0.02 -0.35 9.76 -39.42 -0.38 -0.74 16 13 C -0.05 -0.84 4.90 -83.59 -0.41 -1.25 16 14 N -0.36 -5.59 2.72 -61.87 -0.17 -5.76 16 15 C 0.24 4.15 7.53 -155.27 -1.17 2.98 16 16 N -0.52 -9.54 11.32 -13.51 -0.15 -9.70 16 17 C 0.20 3.19 12.89 -91.44 -1.18 2.01 16 18 N -0.51 -7.90 11.38 -12.41 -0.14 -8.04 16 19 C -0.12 -1.85 7.16 -84.76 -0.61 -2.46 16 20 C 0.56 6.50 7.83 -155.15 -1.21 5.29 16 21 N -0.79 -5.59 8.99 31.29 0.28 -5.31 16 22 N -0.58 -6.98 10.39 -13.62 -0.14 -7.13 16 23 C 0.60 7.90 8.94 -89.94 -0.80 7.10 16 24 F -0.05 -0.64 16.28 2.25 0.04 -0.60 16 25 C -0.05 -0.74 9.36 -39.42 -0.37 -1.11 16 26 C -0.18 -3.18 9.98 -39.42 -0.39 -3.58 16 27 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.15 3.02 5.63 -52.49 -0.30 2.73 16 29 H 0.12 2.03 8.06 -52.48 -0.42 1.61 16 30 H 0.20 2.46 8.06 -52.49 -0.42 2.04 16 31 H 0.43 2.60 8.83 -40.82 -0.36 2.24 16 32 H 0.41 1.79 8.95 -40.82 -0.37 1.42 16 33 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.13 2.08 8.06 -52.49 -0.42 1.65 16 LS Contribution 312.53 15.07 4.71 4.71 Total: -1.00 -30.41 312.53 -8.74 -39.14 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -2.13 Total: 5.94 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -6.94 Total: -1.17 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 0.45 Total: -58.53 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: 0.00 Total: -4.71 kcal Atomic # 9 Polarization: -0.64 SS G_CDS: 0.04 Total: -0.60 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.86 Total: 15.22 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.41 -8.74 -39.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212604919.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.944 kcal (2) G-P(sol) polarization free energy of solvation -30.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds