Wall clock time and date at job start Tue Mar 31 2020 11:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86797 * 119.99624 * 2 1 4 4 H 1.48506 * 109.47063 * 239.99851 * 3 2 1 5 5 H 1.48500 * 109.47275 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47080 * 120.00214 * 3 2 1 7 7 C 1.39910 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99855 * 196.26620 * 7 2 1 9 9 C 1.41287 * 119.99999 * 16.27131 * 7 2 1 10 10 C 1.40619 * 120.22787 * 25.30794 * 9 7 2 11 11 C 1.38192 * 119.70873 * 179.97438 * 10 9 7 12 12 N 1.39803 * 119.91493 * 180.02562 * 11 10 9 13 13 C 1.38912 * 119.99983 * 149.87321 * 12 11 10 14 14 C 1.35009 * 125.02359 * 171.34649 * 13 12 11 15 15 C 1.46692 * 106.10082 * 180.02562 * 14 13 12 16 16 C 1.40507 * 105.60752 * 0.26073 * 15 14 13 17 17 C 1.38825 * 119.32147 * 180.34387 * 16 15 14 18 18 C 1.37946 * 120.02913 * 359.47825 * 17 16 15 19 19 C 1.38693 * 120.71567 * 0.25517 * 18 17 16 20 20 C 1.37998 * 120.22724 * 0.02562 * 19 18 17 21 21 F 1.35096 * 120.22442 * 180.02562 * 20 19 18 22 22 O 1.34539 * 125.02107 * 351.34243 * 13 12 11 23 23 C 1.39437 * 120.17035 * 0.27231 * 11 10 9 24 24 C 1.38355 * 120.45548 * 359.45103 * 23 11 10 25 25 C 1.38015 * 120.29274 * 0.55157 * 24 23 11 26 26 F 1.35104 * 120.08799 * 179.70552 * 25 24 23 27 27 H 0.96996 * 120.00480 * 0.02562 * 1 2 3 28 28 H 1.08007 * 120.14711 * 0.02562 * 10 9 7 29 29 H 0.96998 * 120.00297 * 329.86852 * 12 11 10 30 30 H 1.07999 * 126.95272 * 359.97438 * 14 13 12 31 31 H 1.07996 * 119.98453 * 179.75578 * 17 16 15 32 32 H 1.07996 * 119.64484 * 180.27085 * 18 17 16 33 33 H 1.07996 * 119.88573 * 180.02562 * 19 18 17 34 34 H 1.07997 * 119.77630 * 179.72422 * 23 11 10 35 35 H 1.08004 * 119.85164 * 180.25402 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0963 1.6965 -1.2125 5 1 1.2774 2.7464 -0.0006 6 1 3.0963 1.6965 1.2125 7 6 2.0082 -1.2116 0.0005 8 1 3.0557 -1.2302 0.2625 9 6 1.3443 -2.4109 -0.3418 10 6 0.2054 -2.3792 -1.1660 11 6 -0.4353 -3.5587 -1.4945 12 7 -1.5676 -3.5322 -2.3141 13 6 -1.8501 -4.6102 -3.1433 14 6 -2.9912 -4.7679 -3.8476 15 6 -2.8505 -6.0360 -4.5715 16 6 -1.5890 -6.5390 -4.2113 17 6 -1.1587 -7.7442 -4.7494 18 6 -1.9711 -8.4408 -5.6198 19 6 -3.2190 -7.9484 -5.9719 20 6 -3.6643 -6.7495 -5.4534 21 9 -4.8800 -6.2702 -5.7961 22 8 -1.0271 -5.6515 -3.3634 23 6 0.0415 -4.7747 -1.0064 24 6 1.1647 -4.8145 -0.1996 25 6 1.8194 -3.6480 0.1405 26 9 2.9123 -3.6912 0.9335 27 1 -0.4851 0.8400 -0.0004 28 1 -0.1664 -1.4372 -1.5414 29 1 -2.1560 -2.7611 -2.3037 30 1 -3.8368 -4.0966 -3.8724 31 1 -0.1893 -8.1387 -4.4830 32 1 -1.6320 -9.3799 -6.0313 33 1 -3.8442 -8.5050 -6.6542 34 1 -0.4668 -5.6922 -1.2635 35 1 1.5280 -5.7622 0.1698 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216292933.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:07 Heat of formation + Delta-G solvation = -38.382210 kcal Electronic energy + Delta-G solvation = -24467.154348 eV Core-core repulsion = 20453.128025 eV Total energy + Delta-G solvation = -4014.026324 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.82015 -47.31111 -42.38226 -38.35183 -37.47740 -35.21378 -33.70189 -32.30365 -30.15622 -29.92923 -29.18744 -26.93907 -25.53473 -23.32812 -22.44218 -21.77839 -21.08586 -20.59152 -18.18478 -17.89413 -17.10572 -16.64612 -16.44839 -16.05042 -15.93014 -15.53399 -15.33378 -15.21854 -15.01042 -14.40414 -14.09183 -13.59862 -13.15355 -13.06334 -12.84258 -12.73885 -12.50019 -11.99763 -11.80172 -11.71623 -11.67538 -11.57873 -11.45867 -11.18952 -10.83795 -10.44699 -10.28760 -9.73126 -9.58888 -9.36559 -8.57656 -7.85595 -7.76378 -7.05985 -6.63255 -4.61714 0.87351 1.21121 2.22404 2.35883 2.58318 2.82862 2.95996 2.99064 3.07866 3.54182 3.74142 3.77797 4.17794 4.35653 4.72255 4.75859 5.03226 5.06146 5.26004 5.26436 5.57455 5.77150 5.84561 5.91724 5.98715 6.09550 6.19811 6.29615 6.30940 6.44627 6.64913 6.70304 6.81757 6.96654 7.14654 7.30574 7.35974 7.59536 7.75736 7.96217 8.02541 8.34754 8.54666 8.62673 9.93399 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.021247 B = 0.003206 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.513956 B = 8732.852561 C = 9718.711073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.076 3.924 3 Si 0.916 3.084 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.448 4.448 8 H 0.086 0.914 9 C 0.105 3.895 10 C -0.171 4.171 11 C 0.147 3.853 12 N -0.634 5.634 13 C 0.347 3.653 14 C -0.311 4.311 15 C -0.117 4.117 16 C 0.063 3.937 17 C -0.102 4.102 18 C -0.093 4.093 19 C -0.163 4.163 20 C 0.121 3.879 21 F -0.138 7.138 22 O -0.188 6.188 23 C -0.237 4.237 24 C -0.099 4.099 25 C -0.037 4.037 26 F -0.162 7.162 27 H 0.285 0.715 28 H 0.132 0.868 29 H 0.430 0.570 30 H 0.156 0.844 31 H 0.136 0.864 32 H 0.141 0.859 33 H 0.137 0.863 34 H 0.105 0.895 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.581 -8.855 -8.895 13.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.477 4.477 8 H 0.104 0.896 9 C 0.101 3.899 10 C -0.193 4.193 11 C 0.054 3.946 12 N -0.263 5.263 13 C 0.195 3.805 14 C -0.337 4.337 15 C -0.119 4.119 16 C 0.015 3.985 17 C -0.121 4.121 18 C -0.112 4.112 19 C -0.182 4.182 20 C 0.101 3.899 21 F -0.117 7.117 22 O -0.087 6.087 23 C -0.258 4.258 24 C -0.119 4.119 25 C -0.057 4.057 26 F -0.141 7.141 27 H 0.096 0.904 28 H 0.150 0.850 29 H 0.271 0.729 30 H 0.174 0.826 31 H 0.154 0.846 32 H 0.159 0.841 33 H 0.155 0.845 34 H 0.123 0.877 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.394 -8.750 -8.676 13.451 hybrid contribution -0.113 1.237 0.161 1.253 sum -5.507 -7.513 -8.515 12.620 Atomic orbital electron populations 1.69782 1.07660 1.29852 1.34004 1.25939 0.94847 1.01632 0.91845 0.86227 0.80111 0.79406 0.80320 1.18572 1.20111 1.18696 1.19516 0.98046 0.90640 1.39486 0.89611 1.17336 0.91739 0.91089 0.89776 1.20826 0.99036 0.95735 1.03702 1.17666 0.87884 0.95208 0.93874 1.41573 1.27983 1.16450 1.40323 1.18371 0.87036 0.83836 0.91271 1.21234 1.00371 1.01219 1.10914 1.19566 0.95360 0.96646 1.00322 1.19160 0.91982 0.92791 0.94605 1.19950 1.01542 0.91607 0.98952 1.20582 0.92990 0.99898 0.97700 1.20923 0.98235 0.95537 1.03552 1.16933 0.81150 0.93846 0.97980 1.91466 1.41269 1.88149 1.90788 1.84091 1.41605 1.27859 1.55138 1.19968 1.02048 0.95327 1.08493 1.20295 0.96149 0.95913 0.99513 1.17853 0.90854 0.94746 1.02273 1.91279 1.52697 1.97323 1.72790 0.90411 0.84992 0.72945 0.82613 0.84582 0.84148 0.84547 0.87745 0.87569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.71 10.92 55.55 0.61 -18.10 16 2 C 0.08 1.80 5.17 -17.34 -0.09 1.71 16 3 Si 0.92 17.73 29.59 -169.99 -5.03 12.70 16 4 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 5 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.45 -11.46 8.78 -37.80 -0.33 -11.79 16 8 H 0.09 2.17 7.73 -52.49 -0.41 1.76 16 9 C 0.10 2.67 5.57 -106.78 -0.60 2.08 16 10 C -0.17 -4.05 8.58 -38.70 -0.33 -4.38 16 11 C 0.15 3.16 6.40 -83.79 -0.54 2.62 16 12 N -0.63 -11.33 5.51 -10.56 -0.06 -11.39 16 13 C 0.35 6.00 7.35 -15.49 -0.11 5.88 16 14 C -0.31 -4.88 11.16 -37.32 -0.42 -5.29 16 15 C -0.12 -1.80 6.37 -105.11 -0.67 -2.47 16 16 C 0.06 0.96 7.40 -38.51 -0.29 0.68 16 17 C -0.10 -1.22 10.06 -39.47 -0.40 -1.62 16 18 C -0.09 -0.91 10.01 -39.52 -0.40 -1.31 16 19 C -0.16 -1.76 10.02 -39.50 -0.40 -2.16 16 20 C 0.12 1.65 7.34 -39.15 -0.29 1.37 16 21 F -0.14 -1.93 17.28 2.25 0.04 -1.89 16 22 O -0.19 -3.33 8.13 3.15 0.03 -3.31 16 23 C -0.24 -5.09 8.80 -39.09 -0.34 -5.44 16 24 C -0.10 -2.19 10.00 -39.62 -0.40 -2.59 16 25 C -0.04 -0.90 7.31 -38.61 -0.28 -1.19 16 26 F -0.16 -3.97 16.72 2.25 0.04 -3.94 16 27 H 0.28 6.13 8.30 -40.82 -0.34 5.79 16 28 H 0.13 3.14 6.16 -52.48 -0.32 2.82 16 29 H 0.43 6.63 8.91 -40.82 -0.36 6.27 16 30 H 0.16 2.13 8.06 -52.49 -0.42 1.71 16 31 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.10 2.12 6.31 -52.49 -0.33 1.79 16 35 H 0.11 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 317.47 15.07 4.78 4.78 Total: -1.00 -27.11 317.47 -8.14 -35.24 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -2.67 Total: 9.79 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -5.87 Total: -23.89 kcal Atomic # 7 Polarization: -30.04 SS G_CDS: 0.55 Total: -29.49 kcal Atomic # 8 Polarization: -3.33 SS G_CDS: 0.03 Total: -3.31 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.08 Total: -5.83 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.70 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.11 -8.14 -35.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216292933.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.138 kcal (2) G-P(sol) polarization free energy of solvation -27.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds