Wall clock time and date at job start Tue Mar 31 2020 11:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86797 * 119.99624 * 2 1 4 4 H 1.48506 * 109.47063 * 239.99851 * 3 2 1 5 5 H 1.48500 * 109.47275 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47080 * 120.00214 * 3 2 1 7 7 C 1.39910 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99855 * 196.26620 * 7 2 1 9 9 C 1.41287 * 119.99999 * 16.27131 * 7 2 1 10 10 C 1.40619 * 120.22787 * 25.30794 * 9 7 2 11 11 C 1.38192 * 119.70873 * 179.97438 * 10 9 7 12 12 N 1.39803 * 119.91493 * 180.02562 * 11 10 9 13 13 C 1.38912 * 119.99983 * 149.87321 * 12 11 10 14 14 C 1.35009 * 125.02359 * 171.34649 * 13 12 11 15 15 C 1.46692 * 106.10082 * 180.02562 * 14 13 12 16 16 C 1.40507 * 105.60752 * 0.26073 * 15 14 13 17 17 C 1.38825 * 119.32147 * 180.34387 * 16 15 14 18 18 C 1.37946 * 120.02913 * 359.47825 * 17 16 15 19 19 C 1.38693 * 120.71567 * 0.25517 * 18 17 16 20 20 C 1.37998 * 120.22724 * 0.02562 * 19 18 17 21 21 F 1.35096 * 120.22442 * 180.02562 * 20 19 18 22 22 O 1.34539 * 125.02107 * 351.34243 * 13 12 11 23 23 C 1.39437 * 120.17035 * 0.27231 * 11 10 9 24 24 C 1.38355 * 120.45548 * 359.45103 * 23 11 10 25 25 C 1.38015 * 120.29274 * 0.55157 * 24 23 11 26 26 F 1.35104 * 120.08799 * 179.70552 * 25 24 23 27 27 H 0.96996 * 120.00480 * 0.02562 * 1 2 3 28 28 H 1.08007 * 120.14711 * 0.02562 * 10 9 7 29 29 H 0.96998 * 120.00297 * 329.86852 * 12 11 10 30 30 H 1.07999 * 126.95272 * 359.97438 * 14 13 12 31 31 H 1.07996 * 119.98453 * 179.75578 * 17 16 15 32 32 H 1.07996 * 119.64484 * 180.27085 * 18 17 16 33 33 H 1.07996 * 119.88573 * 180.02562 * 19 18 17 34 34 H 1.07997 * 119.77630 * 179.72422 * 23 11 10 35 35 H 1.08004 * 119.85164 * 180.25402 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0963 1.6965 -1.2125 5 1 1.2774 2.7464 -0.0006 6 1 3.0963 1.6965 1.2125 7 6 2.0082 -1.2116 0.0005 8 1 3.0557 -1.2302 0.2625 9 6 1.3443 -2.4109 -0.3418 10 6 0.2054 -2.3792 -1.1660 11 6 -0.4353 -3.5587 -1.4945 12 7 -1.5676 -3.5322 -2.3141 13 6 -1.8501 -4.6102 -3.1433 14 6 -2.9912 -4.7679 -3.8476 15 6 -2.8505 -6.0360 -4.5715 16 6 -1.5890 -6.5390 -4.2113 17 6 -1.1587 -7.7442 -4.7494 18 6 -1.9711 -8.4408 -5.6198 19 6 -3.2190 -7.9484 -5.9719 20 6 -3.6643 -6.7495 -5.4534 21 9 -4.8800 -6.2702 -5.7961 22 8 -1.0271 -5.6515 -3.3634 23 6 0.0415 -4.7747 -1.0064 24 6 1.1647 -4.8145 -0.1996 25 6 1.8194 -3.6480 0.1405 26 9 2.9123 -3.6912 0.9335 27 1 -0.4851 0.8400 -0.0004 28 1 -0.1664 -1.4372 -1.5414 29 1 -2.1560 -2.7611 -2.3037 30 1 -3.8368 -4.0966 -3.8724 31 1 -0.1893 -8.1387 -4.4830 32 1 -1.6320 -9.3799 -6.0313 33 1 -3.8442 -8.5050 -6.6542 34 1 -0.4668 -5.6922 -1.2635 35 1 1.5280 -5.7622 0.1698 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216292933.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:07 Heat of formation + Delta-G solvation = -51.416585 kcal Electronic energy + Delta-G solvation = -24467.719561 eV Core-core repulsion = 20453.128025 eV Total energy + Delta-G solvation = -4014.591537 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.86305 -49.19852 -43.56377 -39.90723 -38.61511 -36.76692 -35.41144 -33.49417 -31.76542 -31.11912 -30.57760 -28.33808 -27.34061 -24.49129 -23.63876 -23.37624 -22.35397 -22.15225 -19.75477 -18.99376 -18.55903 -18.15791 -17.99747 -17.49937 -17.12504 -16.73061 -16.62895 -16.44308 -16.33545 -16.00414 -15.97583 -14.87292 -14.52485 -14.48272 -14.18659 -14.11324 -14.00131 -13.51456 -13.40705 -13.36008 -12.87911 -12.79375 -12.64008 -12.53686 -12.43651 -12.09758 -11.86943 -11.46874 -11.16664 -10.74885 -9.66022 -9.61007 -9.23910 -8.78854 -8.13478 -6.50797 -0.17162 0.21629 0.64904 0.80538 1.15752 1.36856 1.40566 1.48387 1.54983 2.16545 2.43401 2.56808 2.59053 3.16532 3.42397 3.67711 3.84208 3.94326 3.99673 4.12625 4.21979 4.38339 4.48700 4.54762 4.75043 4.89525 4.95153 4.97732 5.08922 5.18602 5.21713 5.26973 5.30560 5.50459 5.59926 5.64566 5.82332 5.92094 5.99575 6.22360 6.51230 6.61236 6.70623 6.82378 8.19375 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.021247 B = 0.003206 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.513956 B = 8732.852561 C = 9718.711073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.042 3.958 3 Si 0.984 3.016 4 H -0.260 1.260 5 H -0.260 1.260 6 H -0.263 1.263 7 C -0.488 4.488 8 H 0.074 0.926 9 C 0.080 3.920 10 C -0.189 4.189 11 C 0.162 3.838 12 N -0.634 5.634 13 C 0.318 3.682 14 C -0.296 4.296 15 C -0.147 4.147 16 C 0.040 3.960 17 C -0.108 4.108 18 C -0.069 4.069 19 C -0.151 4.151 20 C 0.104 3.896 21 F -0.144 7.144 22 O -0.209 6.209 23 C -0.237 4.237 24 C -0.092 4.092 25 C -0.073 4.073 26 F -0.169 7.169 27 H 0.295 0.705 28 H 0.125 0.875 29 H 0.438 0.562 30 H 0.170 0.830 31 H 0.156 0.844 32 H 0.188 0.812 33 H 0.171 0.829 34 H 0.119 0.881 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.477 -10.666 -10.788 16.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.175 4.175 3 Si 0.805 3.195 4 H -0.184 1.184 5 H -0.184 1.184 6 H -0.187 1.187 7 C -0.516 4.516 8 H 0.092 0.908 9 C 0.076 3.924 10 C -0.211 4.211 11 C 0.067 3.933 12 N -0.266 5.266 13 C 0.168 3.832 14 C -0.323 4.323 15 C -0.149 4.149 16 C -0.007 4.007 17 C -0.127 4.127 18 C -0.087 4.087 19 C -0.169 4.169 20 C 0.084 3.916 21 F -0.123 7.123 22 O -0.110 6.110 23 C -0.258 4.258 24 C -0.112 4.112 25 C -0.093 4.093 26 F -0.148 7.148 27 H 0.106 0.894 28 H 0.143 0.857 29 H 0.280 0.720 30 H 0.187 0.813 31 H 0.174 0.826 32 H 0.205 0.795 33 H 0.188 0.812 34 H 0.137 0.863 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.336 -10.590 -10.597 16.266 hybrid contribution 0.008 1.525 0.558 1.624 sum -6.328 -9.065 -10.039 14.933 Atomic orbital electron populations 1.69800 1.08695 1.31261 1.33604 1.26702 0.95655 1.04283 0.90892 0.85207 0.78903 0.75368 0.80067 1.18423 1.18413 1.18711 1.19687 0.97932 0.92124 1.41858 0.90753 1.17691 0.92653 0.91712 0.90346 1.20754 0.99439 0.96304 1.04629 1.17682 0.88117 0.94494 0.93017 1.41368 1.27219 1.17415 1.40554 1.18431 0.87874 0.84220 0.92659 1.21537 0.99859 1.01427 1.09428 1.19766 0.96323 0.96979 1.01829 1.19731 0.92291 0.93683 0.94974 1.20447 1.02869 0.90476 0.98872 1.21184 0.91667 1.00556 0.95295 1.21416 0.98783 0.94120 1.02625 1.17260 0.81019 0.94919 0.98399 1.91451 1.41562 1.88422 1.90838 1.84013 1.42426 1.28389 1.56161 1.20194 1.01814 0.95913 1.07898 1.20573 0.95690 0.96212 0.98710 1.18119 0.91775 0.95563 1.03857 1.91240 1.53068 1.97380 1.73105 0.89418 0.85718 0.72006 0.81279 0.82629 0.79496 0.81186 0.86282 0.84965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.25 10.92 21.82 0.24 -39.02 16 2 C 0.04 2.02 5.17 85.24 0.44 2.46 16 3 Si 0.98 36.76 29.59 68.60 2.03 38.79 16 4 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 5 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 6 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 7 C -0.49 -26.09 8.78 23.42 0.21 -25.88 16 8 H 0.07 3.98 7.73 -2.91 -0.02 3.96 16 9 C 0.08 4.27 5.57 -21.27 -0.12 4.15 16 10 C -0.19 -9.33 8.58 22.84 0.20 -9.13 16 11 C 0.16 7.12 6.40 38.15 0.24 7.36 16 12 N -0.63 -23.16 5.51 -297.17 -1.64 -24.80 16 13 C 0.32 11.06 7.35 82.83 0.61 11.67 16 14 C -0.30 -9.23 11.16 23.74 0.26 -8.97 16 15 C -0.15 -4.37 6.37 -20.18 -0.13 -4.50 16 16 C 0.04 1.20 7.40 22.96 0.17 1.37 16 17 C -0.11 -2.25 10.06 22.34 0.22 -2.03 16 18 C -0.07 -1.01 10.01 22.31 0.22 -0.79 16 19 C -0.15 -2.60 10.02 22.32 0.22 -2.38 16 20 C 0.10 2.60 7.34 22.55 0.17 2.77 16 21 F -0.14 -3.78 17.28 44.97 0.78 -3.00 16 22 O -0.21 -7.41 8.13 -11.64 -0.09 -7.50 16 23 C -0.24 -10.24 8.80 22.59 0.20 -10.04 16 24 C -0.09 -4.13 10.00 22.24 0.22 -3.91 16 25 C -0.07 -3.71 7.31 22.90 0.17 -3.54 16 26 F -0.17 -8.62 16.72 44.97 0.75 -7.86 16 27 H 0.29 12.77 8.30 -92.71 -0.77 12.00 16 28 H 0.13 6.22 6.16 -2.91 -0.02 6.20 16 29 H 0.44 13.93 8.91 -92.71 -0.83 13.10 16 30 H 0.17 4.57 8.06 -2.91 -0.02 4.55 16 31 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 32 H 0.19 1.07 8.06 -2.91 -0.02 1.04 16 33 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 34 H 0.12 4.78 6.31 -2.91 -0.02 4.77 16 35 H 0.13 5.07 8.06 -2.91 -0.02 5.05 16 Total: -1.00 -61.64 317.47 5.72 -55.92 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.35 Total: 28.87 kcal Atomic # 6 Polarization: -44.70 SS G_CDS: 3.31 Total: -41.40 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: -1.40 Total: -63.81 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -0.09 Total: -7.50 kcal Atomic # 9 Polarization: -12.40 SS G_CDS: 1.53 Total: -10.87 kcal Atomic # 14 Polarization: 36.76 SS G_CDS: 2.03 Total: 38.79 kcal Total: -61.64 5.72 -55.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216292933.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.505 kcal (2) G-P(sol) polarization free energy of solvation -61.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds