Wall clock time and date at job start Tue Mar 31 2020 11:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00137 * 2 1 4 4 H 1.48503 * 109.47159 * 240.00084 * 3 2 1 5 5 H 1.48493 * 109.47143 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46662 * 120.00354 * 3 2 1 7 7 C 1.37877 * 119.99616 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99666 * 172.97017 * 7 2 1 9 9 C 1.50702 * 120.00164 * 352.96592 * 7 2 1 10 10 H 1.08994 * 109.47015 * 333.64126 * 9 7 2 11 11 O 1.42904 * 109.47130 * 213.63587 * 9 7 2 12 12 C 1.35896 * 116.99532 * 84.95216 * 11 9 7 13 13 C 1.38652 * 120.03088 * 354.41778 * 12 11 9 14 14 C 1.38613 * 119.89576 * 179.97438 * 13 12 11 15 15 O 1.35889 * 120.03323 * 180.02562 * 14 13 12 16 16 C 1.38803 * 119.94025 * 0.02562 * 14 13 12 17 17 C 1.38152 * 120.05326 * 0.02562 * 16 14 13 18 18 C 1.38194 * 120.11186 * 359.74599 * 17 16 14 19 19 N 1.48009 * 119.97435 * 180.27646 * 18 17 16 20 20 O 1.21801 * 119.99791 * 0.23633 * 19 18 17 21 21 O 1.21794 * 120.00081 * 180.22920 * 19 18 17 22 22 C 1.50705 * 109.46704 * 93.64013 * 9 7 2 23 23 C 1.38234 * 120.00031 * 81.25899 * 22 9 7 24 24 C 1.38241 * 119.99691 * 179.78593 * 23 22 9 25 25 C 1.38227 * 120.00202 * 0.44030 * 24 23 22 26 26 C 1.38239 * 120.00065 * 359.81088 * 25 24 23 27 27 C 1.38234 * 119.99877 * 261.52620 * 22 9 7 28 28 H 0.97002 * 120.00646 * 184.73175 * 1 2 3 29 29 H 1.08000 * 120.05385 * 359.95451 * 13 12 11 30 30 H 0.96701 * 114.00251 * 89.99801 * 15 14 13 31 31 H 1.08003 * 119.96789 * 180.02562 * 16 14 13 32 32 H 1.07998 * 119.93974 * 179.97438 * 17 16 14 33 33 H 1.08001 * 119.99937 * 359.97438 * 23 22 9 34 34 H 1.08001 * 119.99568 * 180.27012 * 24 23 22 35 35 H 1.07997 * 120.00079 * 179.83677 * 25 24 23 36 36 H 1.07999 * 120.00208 * 180.02562 * 26 25 24 37 37 H 1.07997 * 119.99572 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0783 -1.1976 -0.1150 9 6 1.2594 -2.4943 0.1587 10 1 0.3337 -2.3179 0.7065 11 8 2.0708 -3.4230 0.8808 12 6 2.0284 -3.3544 2.2374 13 6 1.3148 -2.3411 2.8590 14 6 1.2730 -2.2742 4.2429 15 8 0.5740 -1.2826 4.8550 16 6 1.9457 -3.2210 5.0029 17 6 2.6569 -4.2290 4.3811 18 6 2.6962 -4.3006 3.0016 19 7 3.4540 -5.3854 2.3387 20 8 4.0392 -6.2171 3.0090 21 8 3.4924 -5.4465 1.1229 22 6 0.9385 -3.0591 -1.2012 23 6 1.8998 -3.7639 -1.9013 24 6 1.6040 -4.2857 -3.1468 25 6 0.3499 -4.0951 -3.6960 26 6 -0.6098 -3.3858 -2.9981 27 6 -0.3154 -2.8677 -1.7508 28 1 -0.4851 -0.8371 0.0693 29 1 0.7926 -1.6049 2.2659 30 1 -0.3495 -1.5056 5.0351 31 1 1.9131 -3.1695 6.0812 32 1 3.1800 -4.9645 4.9742 33 1 2.8809 -3.9094 -1.4739 34 1 2.3537 -4.8401 -3.6918 35 1 0.1197 -4.5005 -4.6701 36 1 -1.5897 -3.2372 -3.4270 37 1 -1.0651 -2.3138 -1.2054 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225489939.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:37 Heat of formation + Delta-G solvation = -33.903499 kcal Electronic energy + Delta-G solvation = -26281.527721 eV Core-core repulsion = 22378.783124 eV Total energy + Delta-G solvation = -3902.744597 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.69804 -40.12996 -38.86726 -37.86268 -36.29161 -35.89509 -33.74277 -31.14677 -30.77140 -30.23877 -29.82371 -26.82279 -25.61872 -23.91342 -22.59768 -22.22433 -21.72510 -20.53285 -19.04775 -18.73399 -18.20296 -17.63463 -17.06112 -16.70406 -16.27775 -15.70209 -15.13343 -14.87875 -14.46222 -14.29788 -13.97515 -13.92267 -13.54992 -13.01706 -12.85514 -12.66656 -12.38713 -12.21528 -11.87515 -11.39599 -11.06733 -11.02987 -10.88503 -10.76843 -10.61371 -10.59225 -10.47585 -10.35270 -10.04639 -9.34946 -9.14755 -8.87725 -8.28496 -8.25041 -7.89709 -6.84282 -4.63172 0.24460 1.27226 1.68357 1.91028 2.02312 2.07652 3.23691 3.26323 3.40685 3.43705 3.50592 3.98290 4.19041 4.49705 4.64524 4.88491 4.95224 5.06030 5.16888 5.48773 5.52333 5.58488 5.65357 5.77637 5.86565 5.91818 6.08977 6.18824 6.27975 6.29315 6.49941 6.62143 6.69675 6.84331 7.08468 7.13761 7.26322 7.39917 7.46857 7.64120 7.67302 8.09645 8.19900 8.31861 9.06194 10.49289 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.009680 B = 0.006716 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2891.908495 B = 4167.936880 C = 6019.570799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.036 3.964 3 Si 1.068 2.932 4 H -0.282 1.282 5 H -0.277 1.277 6 H -0.282 1.282 7 C -0.611 4.611 8 H 0.068 0.932 9 C 0.217 3.783 10 H 0.051 0.949 11 O -0.276 6.276 12 C 0.249 3.751 13 C -0.228 4.228 14 C 0.195 3.805 15 O -0.490 6.490 16 C -0.201 4.201 17 C -0.012 4.012 18 C -0.114 4.114 19 N 0.046 4.954 20 O -0.206 6.206 21 O -0.137 6.137 22 C -0.043 4.043 23 C -0.096 4.096 24 C -0.127 4.127 25 C -0.142 4.142 26 C -0.125 4.125 27 C -0.115 4.115 28 H 0.269 0.731 29 H 0.171 0.829 30 H 0.399 0.601 31 H 0.145 0.855 32 H 0.155 0.845 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.692 -5.102 5.528 7.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.171 4.171 3 Si 0.894 3.106 4 H -0.208 1.208 5 H -0.202 1.202 6 H -0.208 1.208 7 C -0.647 4.647 8 H 0.087 0.913 9 C 0.164 3.836 10 H 0.069 0.931 11 O -0.185 6.185 12 C 0.196 3.804 13 C -0.247 4.247 14 C 0.149 3.851 15 O -0.302 6.302 16 C -0.221 4.221 17 C -0.031 4.031 18 C -0.200 4.200 19 N 0.560 4.440 20 O -0.410 6.410 21 O -0.359 6.359 22 C -0.044 4.044 23 C -0.114 4.114 24 C -0.145 4.145 25 C -0.160 4.160 26 C -0.143 4.143 27 C -0.133 4.133 28 H 0.081 0.919 29 H 0.188 0.812 30 H 0.257 0.743 31 H 0.163 0.837 32 H 0.172 0.828 33 H 0.142 0.858 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.614 -2.803 5.638 6.500 hybrid contribution -0.144 -1.790 -0.172 1.804 sum -1.758 -4.594 5.466 7.353 Atomic orbital electron populations 1.70934 1.06728 1.31032 1.43175 1.25976 0.96210 1.02836 0.92086 0.83528 0.75190 0.74630 0.77256 1.20833 1.20221 1.20823 1.22191 0.96264 0.89968 1.56314 0.91332 1.19531 0.90973 0.86841 0.86270 0.93122 1.86341 1.63224 1.57209 1.11762 1.18441 0.87598 0.88955 0.85435 1.21920 1.06518 1.01223 0.95058 1.18517 0.91364 0.85493 0.89710 1.84777 1.27490 1.38277 1.79651 1.21140 1.03993 0.95972 1.00948 1.20564 0.94672 0.97312 0.90528 1.20532 1.11070 0.95637 0.92728 1.43259 0.98966 1.00624 1.01145 1.94450 1.45881 1.35484 1.65142 1.94604 1.65905 1.80044 0.95363 1.19998 0.92847 0.94490 0.97030 1.20980 0.99577 0.96826 0.94021 1.21045 0.96617 1.00832 0.95983 1.20928 0.94200 1.01222 0.99629 1.20925 0.98970 0.99254 0.95146 1.20860 0.96166 0.99998 0.96282 0.91855 0.81197 0.74254 0.83711 0.82788 0.85775 0.86835 0.87122 0.86924 0.86524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.75 13.62 55.43 0.76 -21.99 16 2 C 0.04 0.91 5.27 -17.82 -0.09 0.82 16 3 Si 1.07 23.16 29.91 -169.99 -5.08 18.07 16 4 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.61 -15.34 7.75 -34.44 -0.27 -15.61 16 8 H 0.07 1.81 7.82 -52.48 -0.41 1.40 16 9 C 0.22 4.97 1.67 -29.03 -0.05 4.92 16 10 H 0.05 1.17 4.60 -51.93 -0.24 0.93 16 11 O -0.28 -6.15 7.07 -41.57 -0.29 -6.45 16 12 C 0.25 4.96 6.57 -39.24 -0.26 4.70 16 13 C -0.23 -4.22 8.64 -39.29 -0.34 -4.56 16 14 C 0.19 2.92 6.70 -39.23 -0.26 2.66 16 15 O -0.49 -6.43 13.50 -19.39 -0.26 -6.69 16 16 C -0.20 -2.58 9.98 -39.40 -0.39 -2.98 16 17 C -0.01 -0.17 9.54 -39.63 -0.38 -0.54 16 18 C -0.11 -2.08 6.87 -79.78 -0.55 -2.62 16 19 N 0.05 0.90 4.45 34.05 0.15 1.05 16 20 O -0.21 -3.89 18.44 -29.46 -0.54 -4.43 16 21 O -0.14 -2.95 17.23 -36.50 -0.63 -3.58 16 22 C -0.04 -0.95 4.96 -104.62 -0.52 -1.47 16 23 C -0.10 -1.99 9.36 -39.58 -0.37 -2.36 16 24 C -0.13 -2.27 10.05 -39.58 -0.40 -2.66 16 25 C -0.14 -2.38 10.05 -39.58 -0.40 -2.78 16 26 C -0.12 -2.22 10.05 -39.58 -0.40 -2.62 16 27 C -0.11 -2.34 9.45 -39.58 -0.37 -2.72 16 28 H 0.27 6.71 5.11 -40.82 -0.21 6.50 16 29 H 0.17 3.55 5.54 -52.49 -0.29 3.26 16 30 H 0.40 3.05 9.06 45.56 0.41 3.47 16 31 H 0.15 1.38 8.06 -52.48 -0.42 0.96 16 32 H 0.15 1.81 7.60 -52.49 -0.40 1.41 16 33 H 0.12 2.64 7.74 -52.49 -0.41 2.23 16 34 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 35 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 37 H 0.12 2.37 6.80 -52.49 -0.36 2.02 16 LS Contribution 328.98 15.07 4.96 4.96 Total: -1.00 -29.44 328.98 -8.38 -37.82 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -2.38 Total: 9.07 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: -5.05 Total: -27.82 kcal Atomic # 7 Polarization: -21.85 SS G_CDS: 0.91 Total: -20.94 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -1.73 Total: -21.15 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.08 Total: 18.07 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.44 -8.38 -37.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225489939.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.914 kcal (2) G-P(sol) polarization free energy of solvation -29.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds