Wall clock time and date at job start Tue Mar 31 2020 11:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00137 * 2 1 4 4 H 1.48503 * 109.47159 * 240.00084 * 3 2 1 5 5 H 1.48493 * 109.47143 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46662 * 120.00354 * 3 2 1 7 7 C 1.37877 * 119.99616 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99666 * 172.97017 * 7 2 1 9 9 C 1.50702 * 120.00164 * 352.96592 * 7 2 1 10 10 H 1.08994 * 109.47015 * 333.64126 * 9 7 2 11 11 O 1.42904 * 109.47130 * 213.63587 * 9 7 2 12 12 C 1.35896 * 116.99532 * 84.95216 * 11 9 7 13 13 C 1.38652 * 120.03088 * 354.41778 * 12 11 9 14 14 C 1.38613 * 119.89576 * 179.97438 * 13 12 11 15 15 O 1.35889 * 120.03323 * 180.02562 * 14 13 12 16 16 C 1.38803 * 119.94025 * 0.02562 * 14 13 12 17 17 C 1.38152 * 120.05326 * 0.02562 * 16 14 13 18 18 C 1.38194 * 120.11186 * 359.74599 * 17 16 14 19 19 N 1.48009 * 119.97435 * 180.27646 * 18 17 16 20 20 O 1.21801 * 119.99791 * 0.23633 * 19 18 17 21 21 O 1.21794 * 120.00081 * 180.22920 * 19 18 17 22 22 C 1.50705 * 109.46704 * 93.64013 * 9 7 2 23 23 C 1.38234 * 120.00031 * 81.25899 * 22 9 7 24 24 C 1.38241 * 119.99691 * 179.78593 * 23 22 9 25 25 C 1.38227 * 120.00202 * 0.44030 * 24 23 22 26 26 C 1.38239 * 120.00065 * 359.81088 * 25 24 23 27 27 C 1.38234 * 119.99877 * 261.52620 * 22 9 7 28 28 H 0.97002 * 120.00646 * 184.73175 * 1 2 3 29 29 H 1.08000 * 120.05385 * 359.95451 * 13 12 11 30 30 H 0.96701 * 114.00251 * 89.99801 * 15 14 13 31 31 H 1.08003 * 119.96789 * 180.02562 * 16 14 13 32 32 H 1.07998 * 119.93974 * 179.97438 * 17 16 14 33 33 H 1.08001 * 119.99937 * 359.97438 * 23 22 9 34 34 H 1.08001 * 119.99568 * 180.27012 * 24 23 22 35 35 H 1.07997 * 120.00079 * 179.83677 * 25 24 23 36 36 H 1.07999 * 120.00208 * 180.02562 * 26 25 24 37 37 H 1.07997 * 119.99572 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0783 -1.1976 -0.1150 9 6 1.2594 -2.4943 0.1587 10 1 0.3337 -2.3179 0.7065 11 8 2.0708 -3.4230 0.8808 12 6 2.0284 -3.3544 2.2374 13 6 1.3148 -2.3411 2.8590 14 6 1.2730 -2.2742 4.2429 15 8 0.5740 -1.2826 4.8550 16 6 1.9457 -3.2210 5.0029 17 6 2.6569 -4.2290 4.3811 18 6 2.6962 -4.3006 3.0016 19 7 3.4540 -5.3854 2.3387 20 8 4.0392 -6.2171 3.0090 21 8 3.4924 -5.4465 1.1229 22 6 0.9385 -3.0591 -1.2012 23 6 1.8998 -3.7639 -1.9013 24 6 1.6040 -4.2857 -3.1468 25 6 0.3499 -4.0951 -3.6960 26 6 -0.6098 -3.3858 -2.9981 27 6 -0.3154 -2.8677 -1.7508 28 1 -0.4851 -0.8371 0.0693 29 1 0.7926 -1.6049 2.2659 30 1 -0.3495 -1.5056 5.0351 31 1 1.9131 -3.1695 6.0812 32 1 3.1800 -4.9645 4.9742 33 1 2.8809 -3.9094 -1.4739 34 1 2.3537 -4.8401 -3.6918 35 1 0.1197 -4.5005 -4.6701 36 1 -1.5897 -3.2372 -3.4270 37 1 -1.0651 -2.3138 -1.2054 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225489939.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:36 Heat of formation + Delta-G solvation = -50.420227 kcal Electronic energy + Delta-G solvation = -26282.243940 eV Core-core repulsion = 22378.783124 eV Total energy + Delta-G solvation = -3903.460816 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.19843 -41.56393 -40.29555 -39.26455 -37.61268 -37.39119 -35.54054 -32.70337 -32.11877 -31.73996 -31.18991 -28.54983 -27.04943 -25.65061 -24.01415 -23.64021 -23.15578 -22.08808 -20.49153 -20.07531 -19.69043 -19.33619 -18.58045 -18.21289 -17.68026 -17.06831 -16.48913 -16.32008 -16.00936 -15.75436 -15.65422 -15.38898 -14.90274 -14.52244 -14.21963 -14.16679 -13.91714 -13.69652 -13.36240 -12.84612 -12.76316 -12.61760 -12.49023 -12.18463 -12.12712 -12.06081 -11.98325 -11.92082 -11.66851 -11.09581 -10.76726 -10.43299 -9.77354 -9.68211 -9.51056 -8.80635 -6.60839 -1.15860 -0.01135 0.26791 0.46738 0.52068 0.55893 1.45711 1.49533 1.70788 2.02852 2.13589 2.40280 2.82415 2.92398 3.04471 3.33296 3.70726 3.77807 3.89513 4.00328 4.13845 4.21901 4.29133 4.33309 4.43518 4.62040 4.71166 4.76866 4.80395 5.03205 5.12264 5.18524 5.19515 5.35453 5.51633 5.60539 5.63795 5.77506 5.82183 6.17067 6.27295 6.35789 6.58277 6.65062 7.14277 8.52427 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.009680 B = 0.006716 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2891.908495 B = 4167.936880 C = 6019.570799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 1.102 2.898 4 H -0.277 1.277 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.619 4.619 8 H 0.042 0.958 9 C 0.228 3.772 10 H 0.039 0.961 11 O -0.297 6.297 12 C 0.216 3.784 13 C -0.253 4.253 14 C 0.214 3.786 15 O -0.494 6.494 16 C -0.172 4.172 17 C 0.003 3.997 18 C -0.129 4.129 19 N 0.046 4.954 20 O -0.162 6.162 21 O -0.212 6.212 22 C -0.074 4.074 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.130 4.130 26 C -0.122 4.122 27 C -0.134 4.134 28 H 0.265 0.735 29 H 0.139 0.861 30 H 0.425 0.575 31 H 0.197 0.803 32 H 0.191 0.809 33 H 0.103 0.897 34 H 0.144 0.856 35 H 0.156 0.844 36 H 0.146 0.854 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.976 -5.747 7.084 9.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.200 4.200 3 Si 0.924 3.076 4 H -0.202 1.202 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.656 4.656 8 H 0.060 0.940 9 C 0.174 3.826 10 H 0.056 0.944 11 O -0.207 6.207 12 C 0.164 3.836 13 C -0.273 4.273 14 C 0.168 3.832 15 O -0.310 6.310 16 C -0.191 4.191 17 C -0.015 4.015 18 C -0.215 4.215 19 N 0.557 4.443 20 O -0.380 6.380 21 O -0.415 6.415 22 C -0.074 4.074 23 C -0.137 4.137 24 C -0.142 4.142 25 C -0.148 4.148 26 C -0.139 4.139 27 C -0.152 4.152 28 H 0.077 0.923 29 H 0.156 0.844 30 H 0.288 0.712 31 H 0.214 0.786 32 H 0.208 0.792 33 H 0.122 0.878 34 H 0.161 0.839 35 H 0.173 0.827 36 H 0.164 0.836 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.956 -3.420 7.055 8.080 hybrid contribution -0.073 -1.696 -0.390 1.741 sum -2.029 -5.115 6.665 8.643 Atomic orbital electron populations 1.70973 1.07055 1.30864 1.44722 1.26937 0.96439 1.05081 0.91529 0.83097 0.74600 0.72164 0.77724 1.20244 1.19698 1.19968 1.22207 0.95033 0.91717 1.56654 0.93977 1.19267 0.90102 0.86354 0.86863 0.94391 1.86290 1.63801 1.57178 1.13461 1.18802 0.89475 0.90589 0.84721 1.21766 1.07704 1.01028 0.96843 1.18607 0.90762 0.85505 0.88325 1.84713 1.29423 1.37975 1.78894 1.21602 1.01034 0.93507 1.02956 1.21098 0.93816 0.98071 0.88564 1.20853 1.11560 0.95080 0.94023 1.43503 0.98866 1.00914 1.01014 1.94380 1.44052 1.34877 1.64704 1.94637 1.68887 1.81721 0.96265 1.20116 0.94178 0.96207 0.96942 1.20972 0.98707 0.98321 0.95711 1.21406 0.98129 0.99956 0.94707 1.21414 0.92927 0.99550 1.00902 1.21339 1.00755 0.98022 0.93833 1.20954 0.95469 1.00989 0.97808 0.92325 0.84374 0.71185 0.78627 0.79167 0.87847 0.83851 0.82655 0.83615 0.87535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.53 13.62 21.45 0.29 -48.24 16 2 C 0.00 0.18 5.27 84.66 0.45 0.63 16 3 Si 1.10 48.10 29.91 68.60 2.05 50.15 16 4 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.62 -33.46 7.75 25.60 0.20 -33.26 16 8 H 0.04 2.42 7.82 -2.91 -0.02 2.40 16 9 C 0.23 11.37 1.67 29.10 0.05 11.41 16 10 H 0.04 1.95 4.60 -2.39 -0.01 1.94 16 11 O -0.30 -14.48 7.07 -71.19 -0.50 -14.98 16 12 C 0.22 9.08 6.57 22.49 0.15 9.23 16 13 C -0.25 -9.77 8.64 22.46 0.19 -9.58 16 14 C 0.21 6.03 6.70 22.49 0.15 6.18 16 15 O -0.49 -11.72 13.50 -92.31 -1.25 -12.97 16 16 C -0.17 -3.67 9.98 22.38 0.22 -3.45 16 17 C 0.00 0.08 9.54 22.24 0.21 0.29 16 18 C -0.13 -4.71 6.87 36.49 0.25 -4.46 16 19 N 0.05 1.87 4.45 -46.20 -0.21 1.66 16 20 O -0.16 -5.89 18.44 18.88 0.35 -5.54 16 21 O -0.21 -9.77 17.23 25.62 0.44 -9.33 16 22 C -0.07 -3.49 4.96 -19.86 -0.10 -3.58 16 23 C -0.12 -5.25 9.36 22.27 0.21 -5.04 16 24 C -0.12 -4.39 10.05 22.27 0.22 -4.17 16 25 C -0.13 -4.08 10.05 22.27 0.22 -3.86 16 26 C -0.12 -4.19 10.05 22.27 0.22 -3.97 16 27 C -0.13 -5.70 9.45 22.27 0.21 -5.49 16 28 H 0.26 14.10 5.11 -92.71 -0.47 13.62 16 29 H 0.14 6.24 5.54 -2.91 -0.02 6.23 16 30 H 0.43 5.31 9.06 -74.06 -0.67 4.64 16 31 H 0.20 2.34 8.06 -2.91 -0.02 2.31 16 32 H 0.19 3.45 7.60 -2.91 -0.02 3.43 16 33 H 0.10 4.87 7.74 -2.91 -0.02 4.85 16 34 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 35 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 36 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 37 H 0.11 4.63 6.80 -2.91 -0.02 4.61 16 Total: -1.00 -70.24 328.98 4.81 -65.43 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.77 Total: 22.93 kcal Atomic # 6 Polarization: -51.97 SS G_CDS: 2.86 Total: -49.11 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 0.09 Total: -46.58 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -0.96 Total: -42.81 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.05 Total: 50.15 kcal Total: -70.24 4.81 -65.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225489939.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.005 kcal (2) G-P(sol) polarization free energy of solvation -70.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds