Wall clock time and date at job start Tue Mar 31 2020 11:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99818 * 2 1 4 4 H 1.48503 * 109.47208 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47383 * 300.00167 * 3 2 1 6 6 H 1.48499 * 109.47258 * 59.99789 * 3 2 1 7 7 C 1.37872 * 120.00366 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00473 * 189.41851 * 7 2 1 9 9 C 1.50699 * 119.99999 * 9.41213 * 7 2 1 10 10 H 1.08997 * 109.47621 * 185.50477 * 9 7 2 11 11 O 1.42901 * 109.47464 * 305.50289 * 9 7 2 12 12 C 1.35902 * 117.00217 * 279.45285 * 11 9 7 13 13 C 1.38655 * 120.02596 * 4.20640 * 12 11 9 14 14 C 1.38608 * 119.89207 * 179.97438 * 13 12 11 15 15 O 1.35896 * 120.02820 * 179.97438 * 14 13 12 16 16 C 1.38795 * 119.94387 * 0.27570 * 14 13 12 17 17 C 1.38159 * 120.05587 * 359.44220 * 16 14 13 18 18 C 1.38202 * 120.10634 * 0.55962 * 17 16 14 19 19 N 1.48000 * 119.97341 * 179.74454 * 18 17 16 20 20 O 1.21801 * 120.00021 * 359.97419 * 19 18 17 21 21 O 1.21806 * 120.00186 * 179.97438 * 19 18 17 22 22 C 1.50700 * 109.47182 * 65.50513 * 9 7 2 23 23 C 1.38240 * 119.99763 * 271.19281 * 22 9 7 24 24 C 1.38231 * 119.99850 * 179.80870 * 23 22 9 25 25 C 1.38240 * 120.00103 * 0.39930 * 24 23 22 26 26 C 1.38235 * 119.99700 * 359.85086 * 25 24 23 27 27 C 1.38229 * 120.00200 * 91.46602 * 22 9 7 28 28 H 0.97001 * 120.00609 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.05394 * 359.97438 * 13 12 11 30 30 H 0.96700 * 113.99955 * 90.00501 * 15 14 13 31 31 H 1.08004 * 119.97324 * 179.69675 * 16 14 13 32 32 H 1.07997 * 119.94745 * 180.25083 * 17 16 14 33 33 H 1.08004 * 120.00051 * 359.97438 * 23 22 9 34 34 H 1.07998 * 120.00319 * 180.23006 * 24 23 22 35 35 H 1.07998 * 119.99914 * 179.83461 * 25 24 23 36 36 H 1.08000 * 120.00072 * 179.97438 * 26 25 24 37 37 H 1.08000 * 119.99878 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0736 -1.2004 0.1525 9 6 1.2664 -2.4902 -0.2145 10 1 1.9543 -3.3258 -0.0855 11 8 0.2046 -2.5964 0.7360 12 6 0.5355 -3.0125 1.9867 13 6 1.8646 -3.2283 2.3172 14 6 2.1990 -3.6521 3.5938 15 8 3.5008 -3.8650 3.9206 16 6 1.2026 -3.8650 4.5363 17 6 -0.1206 -3.6436 4.2064 18 6 -0.4565 -3.2210 2.9342 19 7 -1.8754 -2.9903 2.5822 20 8 -2.7466 -3.1733 3.4135 21 8 -2.1720 -2.6174 1.4612 22 6 0.6967 -2.5195 -1.6094 23 6 -0.5623 -2.0029 -1.8528 24 6 -1.0833 -2.0262 -3.1329 25 6 -0.3488 -2.5735 -4.1683 26 6 0.9080 -3.0947 -3.9239 27 6 1.4306 -3.0680 -2.6444 28 1 -0.4851 0.8400 0.0004 29 1 2.6382 -3.0664 1.5811 30 1 3.9497 -3.0855 4.2755 31 1 1.4622 -4.1999 5.5297 32 1 -0.8942 -3.8059 4.9423 33 1 -1.1377 -1.5787 -1.0432 34 1 -2.0653 -1.6192 -3.3238 35 1 -0.7569 -2.5941 -5.1679 36 1 1.4817 -3.5227 -4.7326 37 1 2.4125 -3.4752 -2.4535 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225489940.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:39 Heat of formation + Delta-G solvation = -24.533477 kcal Electronic energy + Delta-G solvation = -26554.176936 eV Core-core repulsion = 22651.838654 eV Total energy + Delta-G solvation = -3902.338282 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.37045 -39.85360 -38.61631 -37.60347 -36.06121 -35.56639 -33.18367 -31.03160 -30.56006 -29.99675 -29.55006 -27.19698 -25.36909 -23.79638 -22.33334 -21.96318 -21.46779 -20.26734 -18.82934 -18.52342 -17.87504 -17.17505 -16.69567 -16.35063 -15.83255 -15.46521 -15.25816 -14.87707 -14.33260 -14.09395 -13.93100 -13.64025 -13.36930 -12.77089 -12.60116 -12.39324 -12.24994 -11.79711 -11.58673 -11.37950 -11.15905 -10.76072 -10.70622 -10.70137 -10.59250 -10.29073 -10.27385 -10.18334 -9.72128 -9.56399 -8.97420 -8.88006 -8.03955 -7.89822 -7.69022 -6.33567 -4.58496 0.50572 1.52082 1.95444 2.22361 2.25134 2.38132 3.08573 3.19330 3.19822 3.59129 3.84725 4.12237 4.16205 4.75764 4.85678 4.94158 5.12189 5.26721 5.39522 5.65331 5.74521 5.76621 5.85233 5.98248 6.02910 6.12438 6.28648 6.35660 6.45320 6.61927 6.66839 6.84620 7.03795 7.17187 7.28063 7.41204 7.49030 7.55659 7.64380 7.73820 8.03353 8.09496 8.52287 8.53133 9.16011 10.61832 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.010967 B = 0.006056 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.524101 B = 4622.413710 C = 5276.422735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.087 3.913 3 Si 0.892 3.108 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.282 1.282 7 C -0.565 4.565 8 H 0.072 0.928 9 C 0.231 3.769 10 H 0.039 0.961 11 O -0.240 6.240 12 C 0.260 3.740 13 C -0.234 4.234 14 C 0.188 3.812 15 O -0.497 6.497 16 C -0.212 4.212 17 C -0.010 4.010 18 C -0.117 4.117 19 N 0.044 4.956 20 O -0.227 6.227 21 O -0.112 6.112 22 C -0.041 4.041 23 C -0.065 4.065 24 C -0.140 4.140 25 C -0.143 4.143 26 C -0.140 4.140 27 C -0.125 4.125 28 H 0.269 0.731 29 H 0.162 0.838 30 H 0.399 0.601 31 H 0.140 0.860 32 H 0.150 0.850 33 H 0.160 0.840 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.533 -5.009 3.447 7.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.124 4.124 3 Si 0.718 3.282 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.208 1.208 7 C -0.600 4.600 8 H 0.090 0.910 9 C 0.178 3.822 10 H 0.057 0.943 11 O -0.147 6.147 12 C 0.205 3.795 13 C -0.253 4.253 14 C 0.143 3.857 15 O -0.309 6.309 16 C -0.232 4.232 17 C -0.029 4.029 18 C -0.203 4.203 19 N 0.559 4.441 20 O -0.425 6.425 21 O -0.340 6.340 22 C -0.042 4.042 23 C -0.083 4.083 24 C -0.158 4.158 25 C -0.161 4.161 26 C -0.158 4.158 27 C -0.143 4.143 28 H 0.080 0.920 29 H 0.179 0.821 30 H 0.257 0.743 31 H 0.158 0.842 32 H 0.168 0.832 33 H 0.178 0.822 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.675 -5.532 3.401 7.461 hybrid contribution 0.586 1.688 -0.047 1.788 sum 4.261 -3.844 3.354 6.646 Atomic orbital electron populations 1.69983 1.05772 1.27394 1.42362 1.25024 0.94835 0.99457 0.93062 0.86541 0.80332 0.83250 0.78067 1.19460 1.20347 1.20759 1.21281 0.94554 0.90073 1.54126 0.91039 1.19260 0.83793 0.96577 0.82557 0.94340 1.86617 1.39571 1.73665 1.14832 1.18511 0.90305 0.83833 0.86853 1.21701 0.96095 1.08534 0.99019 1.18488 0.84003 0.91627 0.91594 1.84718 1.20973 1.39779 1.85432 1.21009 0.91233 1.10046 1.00872 1.20535 0.97184 0.92217 0.92976 1.20509 0.80470 1.22307 0.97017 1.43234 1.02572 0.97779 1.00518 1.94426 1.43124 1.58783 1.46138 1.94651 1.87669 1.45274 1.06452 1.19748 0.94073 0.95799 0.94558 1.21705 0.95353 0.94110 0.97129 1.21179 0.99628 1.01152 0.93819 1.20901 0.95516 1.01454 0.98242 1.20766 0.96260 1.02583 0.96202 1.20719 0.99365 1.01344 0.92872 0.92042 0.82075 0.74342 0.84230 0.83240 0.82242 0.87362 0.87749 0.87505 0.87347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.84 9.43 55.43 0.52 -20.32 16 2 C 0.09 2.13 5.21 -17.82 -0.09 2.03 16 3 Si 0.89 19.36 29.55 -169.99 -5.02 14.34 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.56 -13.34 7.58 -34.44 -0.26 -13.60 16 8 H 0.07 1.65 7.83 -52.49 -0.41 1.24 16 9 C 0.23 5.15 2.12 -29.04 -0.06 5.09 16 10 H 0.04 0.80 6.47 -51.93 -0.34 0.46 16 11 O -0.24 -5.51 5.70 -41.58 -0.24 -5.75 16 12 C 0.26 5.34 6.54 -39.24 -0.26 5.08 16 13 C -0.23 -4.15 8.56 -39.29 -0.34 -4.49 16 14 C 0.19 2.77 6.70 -39.24 -0.26 2.51 16 15 O -0.50 -6.08 13.50 -19.41 -0.26 -6.34 16 16 C -0.21 -2.88 9.98 -39.40 -0.39 -3.27 16 17 C -0.01 -0.16 9.55 -39.62 -0.38 -0.53 16 18 C -0.12 -2.30 6.87 -79.78 -0.55 -2.85 16 19 N 0.04 0.96 4.45 34.04 0.15 1.11 16 20 O -0.23 -4.74 18.44 -29.46 -0.54 -5.29 16 21 O -0.11 -2.67 17.23 -36.50 -0.63 -3.30 16 22 C -0.04 -0.91 4.84 -104.62 -0.51 -1.42 16 23 C -0.06 -1.46 8.12 -39.58 -0.32 -1.78 16 24 C -0.14 -2.75 10.05 -39.58 -0.40 -3.15 16 25 C -0.14 -2.55 10.05 -39.58 -0.40 -2.94 16 26 C -0.14 -2.48 10.05 -39.58 -0.40 -2.88 16 27 C -0.12 -2.44 9.70 -39.59 -0.38 -2.82 16 28 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 29 H 0.16 2.90 5.60 -52.49 -0.29 2.61 16 30 H 0.40 2.96 9.06 45.56 0.41 3.37 16 31 H 0.14 1.46 8.06 -52.48 -0.42 1.04 16 32 H 0.15 2.00 7.60 -52.49 -0.40 1.61 16 33 H 0.16 3.95 5.86 -52.48 -0.31 3.65 16 34 H 0.11 1.91 8.06 -52.49 -0.42 1.48 16 35 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.11 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 326.55 15.07 4.92 4.92 Total: -1.00 -28.35 326.55 -8.68 -37.03 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -2.58 Total: 8.62 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: -4.99 Total: -25.02 kcal Atomic # 7 Polarization: -19.89 SS G_CDS: 0.67 Total: -19.21 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -1.67 Total: -20.68 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.35 -8.68 -37.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225489940.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.493 kcal (2) G-P(sol) polarization free energy of solvation -28.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds