Wall clock time and date at job start Tue Mar 31 2020 11:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99818 * 2 1 4 4 H 1.48503 * 109.47208 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47383 * 300.00167 * 3 2 1 6 6 H 1.48499 * 109.47258 * 59.99789 * 3 2 1 7 7 C 1.37872 * 120.00366 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00473 * 189.41851 * 7 2 1 9 9 C 1.50699 * 119.99999 * 9.41213 * 7 2 1 10 10 H 1.08997 * 109.47621 * 185.50477 * 9 7 2 11 11 O 1.42901 * 109.47464 * 305.50289 * 9 7 2 12 12 C 1.35902 * 117.00217 * 279.45285 * 11 9 7 13 13 C 1.38655 * 120.02596 * 4.20640 * 12 11 9 14 14 C 1.38608 * 119.89207 * 179.97438 * 13 12 11 15 15 O 1.35896 * 120.02820 * 179.97438 * 14 13 12 16 16 C 1.38795 * 119.94387 * 0.27570 * 14 13 12 17 17 C 1.38159 * 120.05587 * 359.44220 * 16 14 13 18 18 C 1.38202 * 120.10634 * 0.55962 * 17 16 14 19 19 N 1.48000 * 119.97341 * 179.74454 * 18 17 16 20 20 O 1.21801 * 120.00021 * 359.97419 * 19 18 17 21 21 O 1.21806 * 120.00186 * 179.97438 * 19 18 17 22 22 C 1.50700 * 109.47182 * 65.50513 * 9 7 2 23 23 C 1.38240 * 119.99763 * 271.19281 * 22 9 7 24 24 C 1.38231 * 119.99850 * 179.80870 * 23 22 9 25 25 C 1.38240 * 120.00103 * 0.39930 * 24 23 22 26 26 C 1.38235 * 119.99700 * 359.85086 * 25 24 23 27 27 C 1.38229 * 120.00200 * 91.46602 * 22 9 7 28 28 H 0.97001 * 120.00609 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.05394 * 359.97438 * 13 12 11 30 30 H 0.96700 * 113.99955 * 90.00501 * 15 14 13 31 31 H 1.08004 * 119.97324 * 179.69675 * 16 14 13 32 32 H 1.07997 * 119.94745 * 180.25083 * 17 16 14 33 33 H 1.08004 * 120.00051 * 359.97438 * 23 22 9 34 34 H 1.07998 * 120.00319 * 180.23006 * 24 23 22 35 35 H 1.07998 * 119.99914 * 179.83461 * 25 24 23 36 36 H 1.08000 * 120.00072 * 179.97438 * 26 25 24 37 37 H 1.08000 * 119.99878 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0736 -1.2004 0.1525 9 6 1.2664 -2.4902 -0.2145 10 1 1.9543 -3.3258 -0.0855 11 8 0.2046 -2.5964 0.7360 12 6 0.5355 -3.0125 1.9867 13 6 1.8646 -3.2283 2.3172 14 6 2.1990 -3.6521 3.5938 15 8 3.5008 -3.8650 3.9206 16 6 1.2026 -3.8650 4.5363 17 6 -0.1206 -3.6436 4.2064 18 6 -0.4565 -3.2210 2.9342 19 7 -1.8754 -2.9903 2.5822 20 8 -2.7466 -3.1733 3.4135 21 8 -2.1720 -2.6174 1.4612 22 6 0.6967 -2.5195 -1.6094 23 6 -0.5623 -2.0029 -1.8528 24 6 -1.0833 -2.0262 -3.1329 25 6 -0.3488 -2.5735 -4.1683 26 6 0.9080 -3.0947 -3.9239 27 6 1.4306 -3.0680 -2.6444 28 1 -0.4851 0.8400 0.0004 29 1 2.6382 -3.0664 1.5811 30 1 3.9497 -3.0855 4.2755 31 1 1.4622 -4.1999 5.5297 32 1 -0.8942 -3.8059 4.9423 33 1 -1.1377 -1.5787 -1.0432 34 1 -2.0653 -1.6192 -3.3238 35 1 -0.7569 -2.5941 -5.1679 36 1 1.4817 -3.5227 -4.7326 37 1 2.4125 -3.4752 -2.4535 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225489940.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:38 Heat of formation + Delta-G solvation = -39.856101 kcal Electronic energy + Delta-G solvation = -26554.841374 eV Core-core repulsion = 22651.838654 eV Total energy + Delta-G solvation = -3903.002721 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.96740 -41.27508 -40.04654 -38.99314 -37.40675 -37.16570 -34.91174 -32.62195 -31.92314 -31.49039 -30.95100 -28.88491 -26.87316 -25.43382 -23.77107 -23.40623 -22.91991 -21.82073 -20.30684 -19.85403 -19.45899 -18.75171 -18.32321 -17.84823 -17.29971 -16.89968 -16.80545 -16.16048 -15.83612 -15.60526 -15.40561 -15.14528 -14.73811 -14.15912 -14.06364 -13.86428 -13.67209 -13.37152 -13.10614 -12.91150 -12.89389 -12.43125 -12.32750 -12.25590 -11.98748 -11.95677 -11.76646 -11.74729 -11.33671 -11.18221 -10.72179 -10.25954 -9.54844 -9.36520 -9.25234 -8.13625 -6.43655 -0.96929 0.21525 0.45282 0.69956 0.72866 0.85680 1.33352 1.39243 1.46559 2.28327 2.31475 2.41222 3.00031 3.12890 3.23237 3.54731 3.90027 3.96502 4.07459 4.22821 4.31489 4.43785 4.47456 4.53698 4.65223 4.79271 4.89253 5.00744 5.08085 5.15048 5.33945 5.35905 5.49442 5.54732 5.63093 5.77887 5.81808 5.99217 6.15817 6.39865 6.46046 6.67258 6.80597 6.84254 7.32333 8.78606 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.010967 B = 0.006056 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.524101 B = 4622.413710 C = 5276.422735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.047 3.953 3 Si 0.942 3.058 4 H -0.260 1.260 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.567 4.567 8 H 0.072 0.928 9 C 0.232 3.768 10 H 0.044 0.956 11 O -0.263 6.263 12 C 0.228 3.772 13 C -0.251 4.251 14 C 0.214 3.786 15 O -0.493 6.493 16 C -0.187 4.187 17 C -0.004 4.004 18 C -0.141 4.141 19 N 0.047 4.953 20 O -0.195 6.195 21 O -0.193 6.193 22 C -0.069 4.069 23 C -0.091 4.091 24 C -0.151 4.151 25 C -0.137 4.137 26 C -0.133 4.133 27 C -0.134 4.134 28 H 0.261 0.739 29 H 0.153 0.847 30 H 0.424 0.576 31 H 0.188 0.812 32 H 0.177 0.823 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.607 -6.296 4.530 9.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.160 4.160 3 Si 0.768 3.232 4 H -0.184 1.184 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.603 4.603 8 H 0.090 0.910 9 C 0.178 3.822 10 H 0.062 0.938 11 O -0.171 6.171 12 C 0.174 3.826 13 C -0.271 4.271 14 C 0.168 3.832 15 O -0.309 6.309 16 C -0.206 4.206 17 C -0.023 4.023 18 C -0.227 4.227 19 N 0.555 4.445 20 O -0.405 6.405 21 O -0.401 6.401 22 C -0.069 4.069 23 C -0.109 4.109 24 C -0.170 4.170 25 C -0.155 4.155 26 C -0.151 4.151 27 C -0.152 4.152 28 H 0.070 0.930 29 H 0.170 0.830 30 H 0.287 0.713 31 H 0.205 0.795 32 H 0.194 0.806 33 H 0.144 0.856 34 H 0.138 0.862 35 H 0.160 0.840 36 H 0.164 0.836 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.791 -6.767 4.351 9.912 hybrid contribution 0.043 1.919 -0.149 1.925 sum 5.834 -4.847 4.202 8.671 Atomic orbital electron populations 1.70180 1.06781 1.27004 1.43996 1.25622 0.95300 1.01828 0.93284 0.85763 0.79789 0.80376 0.77291 1.18424 1.21130 1.21141 1.21459 0.94504 0.90848 1.53540 0.91030 1.19224 0.83897 0.96054 0.82982 0.93845 1.86585 1.39575 1.74929 1.16023 1.18932 0.91829 0.85314 0.86522 1.21697 0.94622 1.10143 1.00623 1.18512 0.85540 0.88841 0.90353 1.84666 1.19636 1.41203 1.85409 1.21469 0.89587 1.07291 1.02238 1.20968 0.98973 0.90866 0.91449 1.20888 0.78656 1.24505 0.98690 1.43596 1.03677 0.97077 1.00118 1.94348 1.44130 1.56534 1.45505 1.94684 1.88444 1.49427 1.07581 1.19957 0.94540 0.97174 0.95272 1.21502 0.95962 0.95878 0.97563 1.21393 1.00560 1.01569 0.93435 1.21308 0.95288 0.99698 0.99196 1.21230 0.96316 1.01202 0.96366 1.21017 0.99957 1.01091 0.93175 0.92961 0.82995 0.71305 0.79518 0.80574 0.85647 0.86192 0.84008 0.83559 0.85646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.73 9.43 21.45 0.20 -45.53 16 2 C 0.05 2.40 5.21 84.65 0.44 2.84 16 3 Si 0.94 40.78 29.55 68.60 2.03 42.81 16 4 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 5 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.57 -27.73 7.58 25.60 0.19 -27.53 16 8 H 0.07 3.37 7.83 -2.91 -0.02 3.35 16 9 C 0.23 10.85 2.12 29.10 0.06 10.91 16 10 H 0.04 1.89 6.47 -2.39 -0.02 1.87 16 11 O -0.26 -12.92 5.70 -71.26 -0.41 -13.33 16 12 C 0.23 9.68 6.54 22.49 0.15 9.83 16 13 C -0.25 -8.86 8.56 22.46 0.19 -8.67 16 14 C 0.21 5.64 6.70 22.49 0.15 5.79 16 15 O -0.49 -10.01 13.50 -92.38 -1.25 -11.25 16 16 C -0.19 -4.25 9.98 22.38 0.22 -4.02 16 17 C 0.00 -0.10 9.55 22.24 0.21 0.11 16 18 C -0.14 -5.58 6.87 36.49 0.25 -5.33 16 19 N 0.05 2.14 4.45 -46.20 -0.21 1.93 16 20 O -0.20 -8.20 18.44 18.88 0.35 -7.85 16 21 O -0.19 -9.97 17.23 25.61 0.44 -9.52 16 22 C -0.07 -3.18 4.84 -19.87 -0.10 -3.27 16 23 C -0.09 -4.33 8.12 22.27 0.18 -4.15 16 24 C -0.15 -6.11 10.05 22.27 0.22 -5.89 16 25 C -0.14 -4.65 10.05 22.27 0.22 -4.43 16 26 C -0.13 -4.45 10.05 22.27 0.22 -4.22 16 27 C -0.13 -5.22 9.70 22.27 0.22 -5.00 16 28 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 29 H 0.15 5.56 5.60 -2.91 -0.02 5.54 16 30 H 0.42 4.37 9.06 -74.06 -0.67 3.70 16 31 H 0.19 2.61 8.06 -2.91 -0.02 2.58 16 32 H 0.18 4.05 7.60 -2.91 -0.02 4.03 16 33 H 0.13 6.87 5.86 -2.91 -0.02 6.85 16 34 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 35 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 36 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 37 H 0.13 4.30 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -66.80 326.55 4.47 -62.33 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.47 Total: 23.45 kcal Atomic # 6 Polarization: -45.88 SS G_CDS: 2.84 Total: -43.04 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 0.00 Total: -43.59 kcal Atomic # 8 Polarization: -41.10 SS G_CDS: -0.86 Total: -41.96 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -66.80 4.47 -62.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225489940.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.475 kcal (2) G-P(sol) polarization free energy of solvation -66.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds