Wall clock time and date at job start Tue Mar 31 2020 11:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99865 * 2 1 4 4 H 1.48503 * 109.47030 * 269.99861 * 3 2 1 5 5 H 1.48498 * 109.47601 * 30.00052 * 3 2 1 6 6 H 1.48501 * 109.46810 * 150.00344 * 3 2 1 7 7 C 1.37871 * 119.99565 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99562 * 173.75935 * 7 2 1 9 9 C 1.50701 * 120.00722 * 353.76296 * 7 2 1 10 10 H 1.08998 * 109.46420 * 33.73887 * 9 7 2 11 11 O 1.42895 * 109.47446 * 153.74313 * 9 7 2 12 12 C 1.35895 * 117.00101 * 275.89258 * 11 9 7 13 13 C 1.38801 * 120.02446 * 5.13925 * 12 11 9 14 14 C 1.38151 * 120.05267 * 180.02562 * 13 12 11 15 15 C 1.38199 * 120.11040 * 359.95005 * 14 13 12 16 16 C 1.38752 * 120.05454 * 0.02723 * 15 14 13 17 17 O 1.35898 * 120.02557 * 180.02562 * 16 15 14 18 18 C 1.38605 * 120.02872 * 184.86051 * 12 11 9 19 19 N 1.48016 * 120.05689 * 359.97438 * 18 12 11 20 20 O 1.21805 * 120.00038 * 89.99906 * 19 18 12 21 21 O 1.21801 * 120.00501 * 270.00630 * 19 18 12 22 22 C 1.50699 * 109.46578 * 273.74496 * 9 7 2 23 23 C 1.38232 * 120.00034 * 277.81766 * 22 9 7 24 24 C 1.38238 * 120.00218 * 179.79304 * 23 22 9 25 25 C 1.38242 * 119.99633 * 0.44337 * 24 23 22 26 26 C 1.38234 * 120.00212 * 359.80934 * 25 24 23 27 27 C 1.38234 * 119.99605 * 359.97438 * 26 25 24 28 28 H 0.96996 * 120.00321 * 185.08559 * 1 2 3 29 29 H 1.08000 * 119.97439 * 359.97438 * 13 12 11 30 30 H 1.07996 * 119.94581 * 179.97438 * 14 13 12 31 31 H 1.08003 * 119.97489 * 180.02562 * 15 14 13 32 32 H 0.96696 * 114.00414 * 89.99999 * 17 16 15 33 33 H 1.08001 * 120.00182 * 0.02562 * 23 22 9 34 34 H 1.08001 * 120.00542 * 180.27378 * 24 23 22 35 35 H 1.08002 * 119.99870 * 179.83716 * 25 24 23 36 36 H 1.07999 * 120.00251 * 180.02562 * 26 25 24 37 37 H 1.08004 * 119.99899 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 0.0005 8 1 3.0797 -1.1969 -0.1011 9 6 1.2576 -2.4953 0.1429 10 1 0.2860 -2.4116 -0.3439 11 8 2.0088 -3.5451 -0.4699 12 6 1.8598 -3.7088 -1.8107 13 6 1.0920 -2.8106 -2.5390 14 6 0.9397 -2.9768 -3.9020 15 6 1.5519 -4.0365 -4.5439 16 6 2.3208 -4.9368 -3.8204 17 8 2.9230 -5.9784 -4.4523 18 6 2.4791 -4.7694 -2.4531 19 7 3.3039 -5.7248 -1.6799 20 8 2.7916 -6.7171 -1.1936 21 8 4.4950 -5.5188 -1.5299 22 6 1.0621 -2.8047 1.6047 23 6 2.0797 -3.3986 2.3277 24 6 1.9019 -3.6785 3.6697 25 6 0.7030 -3.3730 4.2865 26 6 -0.3165 -2.7839 3.5623 27 6 -0.1370 -2.4999 2.2215 28 1 -0.4850 -0.8367 0.0745 29 1 0.6126 -1.9817 -2.0396 30 1 0.3416 -2.2771 -4.4669 31 1 1.4318 -4.1641 -5.6096 32 1 3.8129 -5.7812 -4.7753 33 1 3.0151 -3.6404 1.8450 34 1 2.6985 -4.1384 4.2356 35 1 0.5631 -3.5941 5.3344 36 1 -1.2530 -2.5448 4.0443 37 1 -0.9337 -2.0400 1.6555 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225619628.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:41 Heat of formation + Delta-G solvation = -32.249879 kcal Electronic energy + Delta-G solvation = -26231.398268 eV Core-core repulsion = 22328.725378 eV Total energy + Delta-G solvation = -3902.672890 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.84730 -40.11000 -39.00838 -38.04992 -36.17210 -36.07050 -33.86936 -31.60834 -30.81513 -30.29639 -29.34812 -26.88446 -26.00456 -23.93555 -22.58474 -22.35522 -21.82170 -20.66004 -19.36720 -18.48237 -18.38653 -17.68213 -17.38520 -16.71408 -16.37017 -15.61801 -15.38038 -15.00382 -14.55404 -14.50141 -14.14840 -14.01301 -13.59770 -13.00555 -12.74135 -12.59513 -12.26879 -12.02623 -11.89769 -11.49161 -11.39036 -11.25316 -11.06816 -10.89474 -10.72998 -10.64074 -10.54839 -10.38645 -10.13518 -9.46299 -9.22863 -8.82180 -8.33400 -8.25238 -7.96041 -6.86556 -4.66543 0.76538 0.96050 1.20050 1.76295 1.95692 1.99976 3.18707 3.20626 3.27489 3.40596 3.42365 3.99642 4.15261 4.43758 4.76427 4.84253 4.92739 5.03998 5.23147 5.36977 5.43934 5.46493 5.59186 5.79547 5.87016 5.94927 6.10837 6.15943 6.24932 6.33178 6.49802 6.55806 6.60964 6.66112 7.02434 7.05066 7.17802 7.24370 7.34478 7.56334 7.60102 8.00062 8.05364 8.28602 9.03104 10.46666 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.011197 B = 0.005909 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.090607 B = 4737.128939 C = 6258.628355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.037 3.963 3 Si 1.072 2.928 4 H -0.282 1.282 5 H -0.279 1.279 6 H -0.283 1.283 7 C -0.614 4.614 8 H 0.068 0.932 9 C 0.226 3.774 10 H 0.051 0.949 11 O -0.308 6.308 12 C 0.226 3.774 13 C -0.186 4.186 14 C -0.035 4.035 15 C -0.185 4.185 16 C 0.179 3.821 17 O -0.491 6.491 18 C -0.112 4.112 19 N 0.042 4.958 20 O -0.142 6.142 21 O -0.151 6.151 22 C -0.046 4.046 23 C -0.102 4.102 24 C -0.125 4.125 25 C -0.140 4.140 26 C -0.122 4.122 27 C -0.112 4.112 28 H 0.270 0.730 29 H 0.167 0.833 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.400 0.600 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.690 -4.364 -4.749 6.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.170 4.170 3 Si 0.898 3.102 4 H -0.209 1.209 5 H -0.204 1.204 6 H -0.209 1.209 7 C -0.651 4.651 8 H 0.086 0.914 9 C 0.173 3.827 10 H 0.069 0.931 11 O -0.219 6.219 12 C 0.176 3.824 13 C -0.205 4.205 14 C -0.053 4.053 15 C -0.205 4.205 16 C 0.133 3.867 17 O -0.302 6.302 18 C -0.195 4.195 19 N 0.572 4.428 20 O -0.367 6.367 21 O -0.373 6.373 22 C -0.046 4.046 23 C -0.120 4.120 24 C -0.143 4.143 25 C -0.158 4.158 26 C -0.140 4.140 27 C -0.131 4.131 28 H 0.082 0.918 29 H 0.185 0.815 30 H 0.161 0.839 31 H 0.163 0.837 32 H 0.257 0.743 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.343 -2.602 -4.925 5.581 hybrid contribution 0.817 -1.423 0.252 1.660 sum 0.474 -4.025 -4.673 6.186 Atomic orbital electron populations 1.70896 1.06739 1.30964 1.43541 1.25960 0.96203 1.02795 0.92055 0.83474 0.75036 0.74308 0.77339 1.20862 1.20444 1.20894 1.22230 0.96237 0.90218 1.56377 0.91366 1.19477 0.92347 0.84314 0.86553 0.93137 1.86056 1.65291 1.54969 1.15608 1.18272 0.89668 0.89015 0.85487 1.21728 1.02633 1.01327 0.94858 1.21164 0.94919 0.95388 0.93823 1.21146 1.02864 0.95604 1.00841 1.17578 0.95238 0.87829 0.86067 1.84835 1.34813 1.34740 1.75821 1.20642 1.09638 0.97034 0.92140 1.43080 1.00791 1.00333 0.98580 1.94515 1.75770 1.17750 1.48616 1.94503 0.98708 1.80628 1.63472 1.20072 0.93074 0.95114 0.96387 1.20891 0.98880 0.98520 0.93721 1.21038 0.97335 1.01084 0.94887 1.20943 0.94145 1.01514 0.99226 1.20959 0.98804 1.00027 0.94240 1.20891 0.96831 1.00260 0.95099 0.91817 0.81539 0.83886 0.83730 0.74250 0.86550 0.86793 0.86942 0.86719 0.86287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.52 13.63 55.43 0.76 -21.77 16 2 C 0.04 0.92 5.45 -17.82 -0.10 0.82 16 3 Si 1.07 22.72 29.91 -169.99 -5.08 17.64 16 4 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 6 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.61 -15.28 7.66 -34.44 -0.26 -15.54 16 8 H 0.07 1.79 7.82 -52.48 -0.41 1.38 16 9 C 0.23 5.23 1.67 -29.04 -0.05 5.18 16 10 H 0.05 1.18 4.63 -51.93 -0.24 0.94 16 11 O -0.31 -7.03 8.79 -19.41 -0.17 -7.20 16 12 C 0.23 4.60 6.58 -39.24 -0.26 4.34 16 13 C -0.19 -3.37 8.69 -39.41 -0.34 -3.71 16 14 C -0.03 -0.48 10.04 -39.63 -0.40 -0.88 16 15 C -0.19 -2.40 9.98 -39.41 -0.39 -2.80 16 16 C 0.18 2.76 6.70 -39.24 -0.26 2.50 16 17 O -0.49 -6.60 13.26 -19.42 -0.26 -6.86 16 18 C -0.11 -2.13 6.18 -79.66 -0.49 -2.62 16 19 N 0.04 0.85 3.84 34.10 0.13 0.98 16 20 O -0.14 -2.99 19.26 -29.46 -0.57 -3.56 16 21 O -0.15 -3.09 19.26 -29.46 -0.57 -3.66 16 22 C -0.05 -1.02 4.97 -104.62 -0.52 -1.54 16 23 C -0.10 -2.15 9.36 -39.58 -0.37 -2.52 16 24 C -0.13 -2.27 10.05 -39.58 -0.40 -2.66 16 25 C -0.14 -2.36 10.05 -39.58 -0.40 -2.76 16 26 C -0.12 -2.18 10.05 -39.58 -0.40 -2.58 16 27 C -0.11 -2.31 9.47 -39.58 -0.37 -2.69 16 28 H 0.27 6.68 5.11 -40.82 -0.21 6.47 16 29 H 0.17 3.34 5.67 -52.49 -0.30 3.04 16 30 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 31 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 32 H 0.40 3.45 9.06 45.56 0.41 3.87 16 33 H 0.12 2.52 7.71 -52.49 -0.40 2.12 16 34 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.12 2.44 6.80 -52.48 -0.36 2.08 16 LS Contribution 333.24 15.07 5.02 5.02 Total: -1.00 -29.40 333.24 -8.17 -37.56 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -2.42 Total: 9.31 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: -5.01 Total: -27.48 kcal Atomic # 7 Polarization: -21.67 SS G_CDS: 0.89 Total: -20.78 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -1.56 Total: -21.27 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.08 Total: 17.64 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.40 -8.17 -37.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225619628.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.315 kcal (2) G-P(sol) polarization free energy of solvation -29.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds