Wall clock time and date at job start Tue Mar 31 2020 11:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99865 * 2 1 4 4 H 1.48503 * 109.47030 * 269.99861 * 3 2 1 5 5 H 1.48498 * 109.47601 * 30.00052 * 3 2 1 6 6 H 1.48501 * 109.46810 * 150.00344 * 3 2 1 7 7 C 1.37871 * 119.99565 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99562 * 173.75935 * 7 2 1 9 9 C 1.50701 * 120.00722 * 353.76296 * 7 2 1 10 10 H 1.08998 * 109.46420 * 33.73887 * 9 7 2 11 11 O 1.42895 * 109.47446 * 153.74313 * 9 7 2 12 12 C 1.35895 * 117.00101 * 275.89258 * 11 9 7 13 13 C 1.38801 * 120.02446 * 5.13925 * 12 11 9 14 14 C 1.38151 * 120.05267 * 180.02562 * 13 12 11 15 15 C 1.38199 * 120.11040 * 359.95005 * 14 13 12 16 16 C 1.38752 * 120.05454 * 0.02723 * 15 14 13 17 17 O 1.35898 * 120.02557 * 180.02562 * 16 15 14 18 18 C 1.38605 * 120.02872 * 184.86051 * 12 11 9 19 19 N 1.48016 * 120.05689 * 359.97438 * 18 12 11 20 20 O 1.21805 * 120.00038 * 89.99906 * 19 18 12 21 21 O 1.21801 * 120.00501 * 270.00630 * 19 18 12 22 22 C 1.50699 * 109.46578 * 273.74496 * 9 7 2 23 23 C 1.38232 * 120.00034 * 277.81766 * 22 9 7 24 24 C 1.38238 * 120.00218 * 179.79304 * 23 22 9 25 25 C 1.38242 * 119.99633 * 0.44337 * 24 23 22 26 26 C 1.38234 * 120.00212 * 359.80934 * 25 24 23 27 27 C 1.38234 * 119.99605 * 359.97438 * 26 25 24 28 28 H 0.96996 * 120.00321 * 185.08559 * 1 2 3 29 29 H 1.08000 * 119.97439 * 359.97438 * 13 12 11 30 30 H 1.07996 * 119.94581 * 179.97438 * 14 13 12 31 31 H 1.08003 * 119.97489 * 180.02562 * 15 14 13 32 32 H 0.96696 * 114.00414 * 89.99999 * 17 16 15 33 33 H 1.08001 * 120.00182 * 0.02562 * 23 22 9 34 34 H 1.08001 * 120.00542 * 180.27378 * 24 23 22 35 35 H 1.08002 * 119.99870 * 179.83716 * 25 24 23 36 36 H 1.07999 * 120.00251 * 180.02562 * 26 25 24 37 37 H 1.08004 * 119.99899 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 0.0005 8 1 3.0797 -1.1969 -0.1011 9 6 1.2576 -2.4953 0.1429 10 1 0.2860 -2.4116 -0.3439 11 8 2.0088 -3.5451 -0.4699 12 6 1.8598 -3.7088 -1.8107 13 6 1.0920 -2.8106 -2.5390 14 6 0.9397 -2.9768 -3.9020 15 6 1.5519 -4.0365 -4.5439 16 6 2.3208 -4.9368 -3.8204 17 8 2.9230 -5.9784 -4.4523 18 6 2.4791 -4.7694 -2.4531 19 7 3.3039 -5.7248 -1.6799 20 8 2.7916 -6.7171 -1.1936 21 8 4.4950 -5.5188 -1.5299 22 6 1.0621 -2.8047 1.6047 23 6 2.0797 -3.3986 2.3277 24 6 1.9019 -3.6785 3.6697 25 6 0.7030 -3.3730 4.2865 26 6 -0.3165 -2.7839 3.5623 27 6 -0.1370 -2.4999 2.2215 28 1 -0.4850 -0.8367 0.0745 29 1 0.6126 -1.9817 -2.0396 30 1 0.3416 -2.2771 -4.4669 31 1 1.4318 -4.1641 -5.6096 32 1 3.8129 -5.7812 -4.7753 33 1 3.0151 -3.6404 1.8450 34 1 2.6985 -4.1384 4.2356 35 1 0.5631 -3.5941 5.3344 36 1 -1.2530 -2.5448 4.0443 37 1 -0.9337 -2.0400 1.6555 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225619628.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:41 Heat of formation + Delta-G solvation = -49.175364 kcal Electronic energy + Delta-G solvation = -26232.132212 eV Core-core repulsion = 22328.725378 eV Total energy + Delta-G solvation = -3903.406834 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.39979 -41.57817 -40.41385 -39.45389 -37.69573 -37.46162 -35.64111 -33.08696 -32.31195 -31.80109 -30.65688 -28.60145 -27.48546 -25.67047 -23.98800 -23.78192 -23.28714 -22.19145 -20.79194 -20.04583 -19.90435 -19.25507 -18.92859 -18.16785 -17.87525 -17.03078 -16.79949 -16.30173 -16.04302 -15.90434 -15.71155 -15.61905 -15.04895 -14.58817 -14.24449 -13.97557 -13.89254 -13.43972 -13.31447 -12.96035 -12.84450 -12.76018 -12.68576 -12.46327 -12.38866 -12.12642 -12.06400 -12.01916 -11.73516 -11.14284 -10.73183 -10.52169 -9.84765 -9.66415 -9.53910 -8.80354 -6.61228 -0.66921 -0.52762 -0.08717 0.27581 0.44950 0.47811 1.47015 1.53761 1.72718 1.84729 2.12574 2.39843 2.77669 2.89303 3.02225 3.47625 3.66692 3.69287 3.89840 4.02665 4.07914 4.15159 4.19391 4.25244 4.32701 4.65937 4.69007 4.73709 4.91214 5.04684 5.07335 5.09948 5.11786 5.25798 5.47926 5.54753 5.55923 5.70586 5.78741 6.10635 6.22095 6.27700 6.34360 6.36350 7.13956 8.52799 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.011197 B = 0.005909 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.090607 B = 4737.128939 C = 6258.628355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.005 3.995 3 Si 1.107 2.893 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.284 1.284 7 C -0.620 4.620 8 H 0.042 0.958 9 C 0.237 3.763 10 H 0.039 0.961 11 O -0.334 6.334 12 C 0.189 3.811 13 C -0.205 4.205 14 C -0.014 4.014 15 C -0.157 4.157 16 C 0.187 3.813 17 O -0.492 6.492 18 C -0.135 4.135 19 N 0.043 4.957 20 O -0.167 6.167 21 O -0.155 6.155 22 C -0.078 4.078 23 C -0.127 4.127 24 C -0.123 4.123 25 C -0.129 4.129 26 C -0.118 4.118 27 C -0.132 4.132 28 H 0.265 0.735 29 H 0.141 0.859 30 H 0.185 0.815 31 H 0.196 0.804 32 H 0.422 0.578 33 H 0.095 0.905 34 H 0.144 0.856 35 H 0.158 0.842 36 H 0.149 0.851 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.165 -4.272 -5.608 7.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.198 4.198 3 Si 0.929 3.071 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.210 1.210 7 C -0.657 4.657 8 H 0.060 0.940 9 C 0.183 3.817 10 H 0.056 0.944 11 O -0.247 6.247 12 C 0.140 3.860 13 C -0.225 4.225 14 C -0.032 4.032 15 C -0.175 4.175 16 C 0.140 3.860 17 O -0.307 6.307 18 C -0.217 4.217 19 N 0.571 4.429 20 O -0.388 6.388 21 O -0.378 6.378 22 C -0.078 4.078 23 C -0.146 4.146 24 C -0.140 4.140 25 C -0.146 4.146 26 C -0.136 4.136 27 C -0.150 4.150 28 H 0.076 0.924 29 H 0.159 0.841 30 H 0.202 0.798 31 H 0.213 0.787 32 H 0.284 0.716 33 H 0.113 0.887 34 H 0.162 0.838 35 H 0.176 0.824 36 H 0.167 0.833 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.874 -2.554 -5.804 6.401 hybrid contribution 1.000 -1.562 0.427 1.903 sum 0.126 -4.116 -5.377 6.773 Atomic orbital electron populations 1.70942 1.07068 1.30745 1.44895 1.26949 0.96395 1.05039 0.91395 0.83029 0.74049 0.71707 0.78315 1.18933 1.20161 1.20971 1.22209 0.94910 0.91740 1.56873 0.93981 1.19246 0.91379 0.83832 0.87262 0.94372 1.85985 1.66098 1.55137 1.17465 1.18642 0.91873 0.90715 0.84816 1.21639 1.03368 1.00673 0.96788 1.21626 0.93736 0.95928 0.91890 1.21662 0.99817 0.93328 1.02738 1.17860 0.95188 0.88251 0.84690 1.84792 1.36426 1.34215 1.75263 1.21036 1.10456 0.96819 0.93382 1.43357 1.00831 1.00392 0.98335 1.94492 1.75806 1.18853 1.49611 1.94468 0.99386 1.80597 1.63391 1.20201 0.94471 0.97000 0.96155 1.20897 0.98063 1.00160 0.95456 1.21408 0.98940 1.00130 0.93571 1.21441 0.92733 0.99324 1.01129 1.21386 1.00528 0.98716 0.92975 1.20985 0.96112 1.01223 0.96681 0.92364 0.84143 0.79815 0.78720 0.71588 0.88675 0.83780 0.82409 0.83336 0.87265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.31 13.63 21.44 0.29 -47.01 16 2 C 0.01 0.27 5.45 84.65 0.46 0.73 16 3 Si 1.11 46.52 29.91 68.60 2.05 48.58 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 5 H -0.28 -11.43 7.11 99.48 0.71 -10.73 16 6 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.62 -32.80 7.66 25.60 0.20 -32.60 16 8 H 0.04 2.37 7.82 -2.91 -0.02 2.35 16 9 C 0.24 11.74 1.67 29.10 0.05 11.79 16 10 H 0.04 1.95 4.63 -2.39 -0.01 1.94 16 11 O -0.33 -16.50 8.79 -92.37 -0.81 -17.31 16 12 C 0.19 8.06 6.58 22.49 0.15 8.20 16 13 C -0.21 -7.62 8.69 22.38 0.19 -7.43 16 14 C -0.01 -0.36 10.04 22.24 0.22 -0.14 16 15 C -0.16 -3.45 9.98 22.38 0.22 -3.22 16 16 C 0.19 5.40 6.70 22.49 0.15 5.55 16 17 O -0.49 -11.94 13.26 -92.40 -1.23 -13.16 16 18 C -0.13 -5.22 6.18 36.56 0.23 -4.99 16 19 N 0.04 1.82 3.84 -46.01 -0.18 1.64 16 20 O -0.17 -7.36 19.26 18.88 0.36 -7.00 16 21 O -0.15 -6.53 19.26 18.88 0.36 -6.17 16 22 C -0.08 -3.66 4.97 -19.87 -0.10 -3.76 16 23 C -0.13 -5.64 9.36 22.27 0.21 -5.43 16 24 C -0.12 -4.32 10.05 22.27 0.22 -4.10 16 25 C -0.13 -3.99 10.05 22.27 0.22 -3.77 16 26 C -0.12 -4.03 10.05 22.27 0.22 -3.81 16 27 C -0.13 -5.58 9.47 22.27 0.21 -5.37 16 28 H 0.26 13.82 5.11 -92.71 -0.47 13.34 16 29 H 0.14 5.99 5.67 -2.91 -0.02 5.97 16 30 H 0.18 3.14 8.06 -2.91 -0.02 3.12 16 31 H 0.20 2.45 8.06 -2.91 -0.02 2.43 16 32 H 0.42 6.07 9.06 -74.06 -0.67 5.40 16 33 H 0.09 4.48 7.71 -2.91 -0.02 4.46 16 34 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 35 H 0.16 3.51 8.06 -2.91 -0.02 3.48 16 36 H 0.15 3.99 8.06 -2.91 -0.02 3.97 16 37 H 0.11 4.72 6.80 -2.91 -0.02 4.70 16 Total: -1.00 -69.42 333.24 4.49 -64.93 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.77 Total: 23.84 kcal Atomic # 6 Polarization: -51.20 SS G_CDS: 2.86 Total: -48.34 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.12 Total: -45.37 kcal Atomic # 8 Polarization: -42.33 SS G_CDS: -1.31 Total: -43.64 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.05 Total: 48.58 kcal Total: -69.42 4.49 -64.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225619628.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.758 kcal (2) G-P(sol) polarization free energy of solvation -69.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds