Wall clock time and date at job start Tue Mar 31 2020 11:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00270 * 2 1 4 4 H 1.48500 * 109.47313 * 271.53328 * 3 2 1 5 5 H 1.48506 * 109.47219 * 31.53412 * 3 2 1 6 6 H 1.48500 * 109.47227 * 151.53304 * 3 2 1 7 7 C 1.37885 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99926 * 350.72182 * 7 2 1 9 9 C 1.50697 * 119.99824 * 170.71968 * 7 2 1 10 10 H 1.09008 * 109.47307 * 354.89419 * 9 7 2 11 11 O 1.42897 * 109.47320 * 234.89398 * 9 7 2 12 12 C 1.35901 * 117.00282 * 85.74982 * 11 9 7 13 13 C 1.38798 * 120.02288 * 355.02562 * 12 11 9 14 14 C 1.38150 * 120.05124 * 179.97438 * 13 12 11 15 15 C 1.38202 * 120.11097 * 359.97438 * 14 13 12 16 16 C 1.38753 * 120.05346 * 0.02562 * 15 14 13 17 17 O 1.35897 * 120.02751 * 179.72391 * 16 15 14 18 18 C 1.38610 * 120.03054 * 174.99479 * 12 11 9 19 19 N 1.48023 * 120.05192 * 0.02912 * 18 12 11 20 20 O 1.21807 * 119.99805 * 269.99202 * 19 18 12 21 21 O 1.21795 * 120.00186 * 89.99396 * 19 18 12 22 22 C 1.50696 * 109.47169 * 114.89123 * 9 7 2 23 23 C 1.38237 * 119.99862 * 81.28553 * 22 9 7 24 24 C 1.38237 * 120.00098 * 179.81105 * 23 22 9 25 25 C 1.38236 * 119.99923 * 0.39651 * 24 23 22 26 26 C 1.38234 * 119.99969 * 359.86321 * 25 24 23 27 27 C 1.38233 * 120.00338 * 261.56127 * 22 9 7 28 28 H 0.96995 * 119.99742 * 0.02562 * 1 2 3 29 29 H 1.07999 * 119.97453 * 359.94530 * 13 12 11 30 30 H 1.08003 * 119.94641 * 179.97438 * 14 13 12 31 31 H 1.08000 * 119.97113 * 180.02562 * 15 14 13 32 32 H 0.96700 * 114.00121 * 89.99391 * 17 16 15 33 33 H 1.07996 * 119.99813 * 0.02562 * 23 22 9 34 34 H 1.08000 * 120.00373 * 180.23524 * 24 23 22 35 35 H 1.07997 * 120.00249 * 179.83094 * 25 24 23 36 36 H 1.07999 * 120.00084 * 179.97438 * 26 25 24 37 37 H 1.08005 * 119.99891 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4643 2.0651 -1.3996 5 1 1.4632 2.6431 0.7323 6 1 3.5625 1.4309 0.6673 7 6 2.0045 -1.1942 0.0005 8 1 1.4750 -2.1232 0.1517 9 6 3.4966 -1.2028 -0.2099 10 1 3.8379 -0.1921 -0.4339 11 8 3.8188 -2.0671 -1.3013 12 6 3.7682 -1.5307 -2.5490 13 6 3.3166 -0.2305 -2.7281 14 6 3.2654 0.3156 -3.9961 15 6 3.6641 -0.4306 -5.0889 16 6 4.1164 -1.7308 -4.9150 17 8 4.5030 -2.4659 -5.9906 18 6 4.1682 -2.2812 -3.6435 19 7 4.6503 -3.6680 -3.4551 20 8 5.8343 -3.8804 -3.2632 21 8 3.8632 -4.5967 -3.4921 22 6 4.1774 -1.6973 1.0403 23 6 4.2646 -3.0542 1.2892 24 6 4.8925 -3.5080 2.4341 25 6 5.4260 -2.6045 3.3341 26 6 5.3341 -1.2474 3.0878 27 6 4.7097 -0.7938 1.9410 28 1 -0.4849 0.8400 -0.0004 29 1 3.0044 0.3545 -1.8756 30 1 2.9133 1.3273 -4.1335 31 1 3.6236 -0.0013 -6.0791 32 1 5.4407 -2.3790 -6.2099 33 1 3.8452 -3.7600 0.5876 34 1 4.9640 -4.5682 2.6268 35 1 5.9142 -2.9588 4.2299 36 1 5.7506 -0.5415 3.7911 37 1 4.6380 0.2666 1.7484 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225619629.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:44 Heat of formation + Delta-G solvation = -20.571348 kcal Electronic energy + Delta-G solvation = -26339.831252 eV Core-core repulsion = 22437.664780 eV Total energy + Delta-G solvation = -3902.166471 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.80602 -40.10370 -39.02506 -38.08203 -36.14539 -36.02151 -33.49477 -31.88396 -31.06052 -30.41737 -29.40590 -27.68827 -25.99182 -23.80078 -22.58669 -22.37038 -21.93374 -20.47922 -19.31309 -18.46739 -18.30041 -17.66361 -17.45650 -16.84413 -16.46676 -15.62544 -15.45980 -15.21824 -14.69183 -14.58281 -14.21359 -14.10802 -13.45949 -13.16512 -12.95071 -12.64895 -12.43822 -12.30202 -11.94708 -11.55331 -11.48580 -11.31177 -11.20955 -10.91287 -10.69255 -10.67700 -10.54733 -10.25826 -10.11085 -9.78480 -9.21971 -9.13166 -8.43164 -8.27951 -8.04306 -6.64930 -4.69425 0.77938 1.01047 1.23137 1.79697 1.85311 1.90518 2.73757 2.86224 2.93390 3.23780 3.41006 3.81386 3.97616 4.32756 4.69760 4.78467 4.88346 5.05038 5.22595 5.33842 5.36611 5.38347 5.52186 5.66280 5.75892 5.89142 6.02416 6.08978 6.14710 6.30442 6.40373 6.45681 6.54481 6.68536 6.89609 6.92601 6.98530 7.14737 7.25097 7.49093 7.61365 7.94567 8.05421 8.51540 8.90693 10.46029 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.011333 B = 0.006532 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.084766 B = 4285.484344 C = 5932.961455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.087 3.913 3 Si 0.845 3.155 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.251 1.251 7 C -0.534 4.534 8 H 0.092 0.908 9 C 0.207 3.793 10 H 0.051 0.949 11 O -0.310 6.310 12 C 0.234 3.766 13 C -0.203 4.203 14 C -0.032 4.032 15 C -0.187 4.187 16 C 0.184 3.816 17 O -0.489 6.489 18 C -0.113 4.113 19 N 0.042 4.958 20 O -0.157 6.157 21 O -0.134 6.134 22 C -0.041 4.041 23 C -0.099 4.099 24 C -0.121 4.121 25 C -0.138 4.138 26 C -0.121 4.121 27 C -0.125 4.125 28 H 0.275 0.725 29 H 0.154 0.846 30 H 0.141 0.859 31 H 0.146 0.854 32 H 0.399 0.601 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.800 2.960 -4.237 11.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.121 4.121 3 Si 0.671 3.329 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.176 1.176 7 C -0.570 4.570 8 H 0.110 0.890 9 C 0.154 3.846 10 H 0.068 0.932 11 O -0.222 6.222 12 C 0.183 3.817 13 C -0.221 4.221 14 C -0.051 4.051 15 C -0.206 4.206 16 C 0.137 3.863 17 O -0.300 6.300 18 C -0.195 4.195 19 N 0.573 4.427 20 O -0.377 6.377 21 O -0.361 6.361 22 C -0.042 4.042 23 C -0.117 4.117 24 C -0.139 4.139 25 C -0.156 4.156 26 C -0.139 4.139 27 C -0.143 4.143 28 H 0.086 0.914 29 H 0.171 0.829 30 H 0.159 0.841 31 H 0.164 0.836 32 H 0.257 0.743 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.843 3.436 -4.234 10.389 hybrid contribution 0.576 0.876 0.214 1.070 sum 9.420 4.313 -4.020 11.112 Atomic orbital electron populations 1.69861 1.06163 1.28046 1.44807 1.25081 0.94869 0.98723 0.93390 0.87519 0.81502 0.84422 0.79423 1.18692 1.19693 1.17587 1.21175 0.88189 0.96413 1.51255 0.89013 1.19650 0.96225 0.88819 0.79891 0.93182 1.86238 1.81090 1.43158 1.11675 1.18243 0.88195 0.90303 0.84972 1.21751 1.05450 0.94800 1.00137 1.21117 0.92916 0.99881 0.91136 1.21105 1.06716 0.92303 1.00467 1.17593 0.96367 0.89783 0.82523 1.84859 1.31756 1.68186 1.45216 1.20641 1.19540 0.84733 0.94572 1.43052 1.00203 1.02599 0.96875 1.94484 1.00830 1.90917 1.51488 1.94534 1.52853 1.36085 1.52600 1.19829 0.94290 0.93795 0.96268 1.20966 0.98376 0.95354 0.97037 1.21081 0.98935 0.99220 0.94683 1.20970 1.01765 0.93401 0.99492 1.20944 1.00244 0.95588 0.97157 1.20972 0.98925 0.99385 0.95048 0.91435 0.82872 0.84089 0.83627 0.74335 0.86066 0.86545 0.86781 0.86621 0.86365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.28 13.96 55.43 0.77 -22.50 16 2 C 0.09 2.22 5.24 -17.82 -0.09 2.13 16 3 Si 0.85 17.70 24.74 -169.99 -4.21 13.49 16 4 H -0.26 -4.96 6.49 56.52 0.37 -4.60 16 5 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.25 -4.90 4.90 56.52 0.28 -4.63 16 7 C -0.53 -13.84 8.70 -34.44 -0.30 -14.14 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 C 0.21 4.69 1.86 -29.04 -0.05 4.63 16 10 H 0.05 1.09 3.53 -51.92 -0.18 0.90 16 11 O -0.31 -7.09 8.82 -19.43 -0.17 -7.26 16 12 C 0.23 4.87 6.60 -39.24 -0.26 4.61 16 13 C -0.20 -3.85 8.73 -39.41 -0.34 -4.19 16 14 C -0.03 -0.48 10.04 -39.63 -0.40 -0.88 16 15 C -0.19 -2.52 9.98 -39.40 -0.39 -2.91 16 16 C 0.18 2.90 6.70 -39.24 -0.26 2.63 16 17 O -0.49 -6.65 13.26 -19.42 -0.26 -6.91 16 18 C -0.11 -2.18 6.18 -79.65 -0.49 -2.67 16 19 N 0.04 0.86 3.84 34.10 0.13 1.00 16 20 O -0.16 -3.13 19.26 -29.46 -0.57 -3.70 16 21 O -0.13 -2.90 19.25 -29.46 -0.57 -3.47 16 22 C -0.04 -0.88 4.96 -104.63 -0.52 -1.40 16 23 C -0.10 -1.99 9.36 -39.58 -0.37 -2.37 16 24 C -0.12 -2.05 10.05 -39.58 -0.40 -2.45 16 25 C -0.14 -2.15 10.05 -39.58 -0.40 -2.54 16 26 C -0.12 -1.96 10.05 -39.58 -0.40 -2.36 16 27 C -0.13 -2.38 9.67 -39.58 -0.38 -2.76 16 28 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.15 3.11 1.57 -52.49 -0.08 3.03 16 30 H 0.14 1.66 8.06 -52.48 -0.42 1.24 16 31 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.40 3.36 9.06 45.56 0.41 3.77 16 33 H 0.12 2.53 7.74 -52.49 -0.41 2.12 16 34 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 37 H 0.12 2.15 6.23 -52.48 -0.33 1.83 16 LS Contribution 324.57 15.07 4.89 4.89 Total: -1.00 -30.15 324.57 -7.45 -37.60 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -2.42 Total: 11.53 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: -5.06 Total: -24.67 kcal Atomic # 7 Polarization: -22.41 SS G_CDS: 0.90 Total: -21.51 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -1.56 Total: -21.34 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -4.21 Total: 13.49 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.15 -7.45 -37.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225619629.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.032 kcal (2) G-P(sol) polarization free energy of solvation -30.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds