Wall clock time and date at job start Tue Mar 31 2020 11:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00270 * 2 1 4 4 H 1.48500 * 109.47313 * 271.53328 * 3 2 1 5 5 H 1.48506 * 109.47219 * 31.53412 * 3 2 1 6 6 H 1.48500 * 109.47227 * 151.53304 * 3 2 1 7 7 C 1.37885 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99926 * 350.72182 * 7 2 1 9 9 C 1.50697 * 119.99824 * 170.71968 * 7 2 1 10 10 H 1.09008 * 109.47307 * 354.89419 * 9 7 2 11 11 O 1.42897 * 109.47320 * 234.89398 * 9 7 2 12 12 C 1.35901 * 117.00282 * 85.74982 * 11 9 7 13 13 C 1.38798 * 120.02288 * 355.02562 * 12 11 9 14 14 C 1.38150 * 120.05124 * 179.97438 * 13 12 11 15 15 C 1.38202 * 120.11097 * 359.97438 * 14 13 12 16 16 C 1.38753 * 120.05346 * 0.02562 * 15 14 13 17 17 O 1.35897 * 120.02751 * 179.72391 * 16 15 14 18 18 C 1.38610 * 120.03054 * 174.99479 * 12 11 9 19 19 N 1.48023 * 120.05192 * 0.02912 * 18 12 11 20 20 O 1.21807 * 119.99805 * 269.99202 * 19 18 12 21 21 O 1.21795 * 120.00186 * 89.99396 * 19 18 12 22 22 C 1.50696 * 109.47169 * 114.89123 * 9 7 2 23 23 C 1.38237 * 119.99862 * 81.28553 * 22 9 7 24 24 C 1.38237 * 120.00098 * 179.81105 * 23 22 9 25 25 C 1.38236 * 119.99923 * 0.39651 * 24 23 22 26 26 C 1.38234 * 119.99969 * 359.86321 * 25 24 23 27 27 C 1.38233 * 120.00338 * 261.56127 * 22 9 7 28 28 H 0.96995 * 119.99742 * 0.02562 * 1 2 3 29 29 H 1.07999 * 119.97453 * 359.94530 * 13 12 11 30 30 H 1.08003 * 119.94641 * 179.97438 * 14 13 12 31 31 H 1.08000 * 119.97113 * 180.02562 * 15 14 13 32 32 H 0.96700 * 114.00121 * 89.99391 * 17 16 15 33 33 H 1.07996 * 119.99813 * 0.02562 * 23 22 9 34 34 H 1.08000 * 120.00373 * 180.23524 * 24 23 22 35 35 H 1.07997 * 120.00249 * 179.83094 * 25 24 23 36 36 H 1.07999 * 120.00084 * 179.97438 * 26 25 24 37 37 H 1.08005 * 119.99891 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4643 2.0651 -1.3996 5 1 1.4632 2.6431 0.7323 6 1 3.5625 1.4309 0.6673 7 6 2.0045 -1.1942 0.0005 8 1 1.4750 -2.1232 0.1517 9 6 3.4966 -1.2028 -0.2099 10 1 3.8379 -0.1921 -0.4339 11 8 3.8188 -2.0671 -1.3013 12 6 3.7682 -1.5307 -2.5490 13 6 3.3166 -0.2305 -2.7281 14 6 3.2654 0.3156 -3.9961 15 6 3.6641 -0.4306 -5.0889 16 6 4.1164 -1.7308 -4.9150 17 8 4.5030 -2.4659 -5.9906 18 6 4.1682 -2.2812 -3.6435 19 7 4.6503 -3.6680 -3.4551 20 8 5.8343 -3.8804 -3.2632 21 8 3.8632 -4.5967 -3.4921 22 6 4.1774 -1.6973 1.0403 23 6 4.2646 -3.0542 1.2892 24 6 4.8925 -3.5080 2.4341 25 6 5.4260 -2.6045 3.3341 26 6 5.3341 -1.2474 3.0878 27 6 4.7097 -0.7938 1.9410 28 1 -0.4849 0.8400 -0.0004 29 1 3.0044 0.3545 -1.8756 30 1 2.9133 1.3273 -4.1335 31 1 3.6236 -0.0013 -6.0791 32 1 5.4407 -2.3790 -6.2099 33 1 3.8452 -3.7600 0.5876 34 1 4.9640 -4.5682 2.6268 35 1 5.9142 -2.9588 4.2299 36 1 5.7506 -0.5415 3.7911 37 1 4.6380 0.2666 1.7484 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225619629.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:43 Heat of formation + Delta-G solvation = -40.710238 kcal Electronic energy + Delta-G solvation = -26340.704539 eV Core-core repulsion = 22437.664780 eV Total energy + Delta-G solvation = -3903.039759 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.37201 -41.57779 -40.38755 -39.43891 -37.65861 -37.44062 -35.30835 -33.45688 -32.48144 -31.80443 -30.72873 -29.38312 -27.48897 -25.46697 -23.97318 -23.79703 -23.32716 -21.94111 -20.78304 -20.02763 -19.79783 -19.38666 -18.98823 -18.29344 -17.90883 -17.07780 -16.91444 -16.45370 -16.11354 -16.01398 -15.75008 -15.52035 -14.98188 -14.82618 -14.35237 -14.02961 -13.89754 -13.60122 -13.40877 -13.05866 -12.85873 -12.84043 -12.70934 -12.39901 -12.35010 -12.13140 -12.06273 -11.89538 -11.71573 -11.46071 -10.96330 -10.55520 -9.82653 -9.67492 -9.52096 -8.58027 -6.71371 -0.62936 -0.52997 -0.07774 0.30246 0.44427 0.50125 1.10702 1.19977 1.29280 1.83010 2.06024 2.11393 2.68623 2.88216 2.94377 3.47141 3.62206 3.70487 3.80575 4.02287 4.08725 4.14431 4.17530 4.21872 4.29777 4.65857 4.70892 4.71955 4.85596 4.99301 5.03634 5.09627 5.11500 5.14121 5.26902 5.56084 5.59757 5.69070 5.84222 6.10803 6.19392 6.31146 6.40445 6.41050 6.95213 8.58089 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.011333 B = 0.006532 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.084766 B = 4285.484344 C = 5932.961455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.039 3.961 3 Si 0.902 3.098 4 H -0.224 1.224 5 H -0.270 1.270 6 H -0.231 1.231 7 C -0.548 4.548 8 H 0.028 0.972 9 C 0.219 3.781 10 H 0.062 0.938 11 O -0.336 6.336 12 C 0.195 3.805 13 C -0.228 4.228 14 C -0.016 4.016 15 C -0.159 4.159 16 C 0.192 3.808 17 O -0.492 6.492 18 C -0.137 4.137 19 N 0.043 4.957 20 O -0.132 6.132 21 O -0.189 6.189 22 C -0.077 4.077 23 C -0.129 4.129 24 C -0.122 4.122 25 C -0.126 4.126 26 C -0.113 4.113 27 C -0.139 4.139 28 H 0.279 0.721 29 H 0.140 0.860 30 H 0.184 0.816 31 H 0.197 0.803 32 H 0.424 0.576 33 H 0.091 0.909 34 H 0.141 0.859 35 H 0.159 0.841 36 H 0.157 0.843 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.611 5.911 -4.907 14.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.164 4.164 3 Si 0.723 3.277 4 H -0.148 1.148 5 H -0.195 1.195 6 H -0.155 1.155 7 C -0.584 4.584 8 H 0.046 0.954 9 C 0.166 3.834 10 H 0.079 0.921 11 O -0.249 6.249 12 C 0.146 3.854 13 C -0.247 4.247 14 C -0.034 4.034 15 C -0.177 4.177 16 C 0.145 3.855 17 O -0.307 6.307 18 C -0.219 4.219 19 N 0.571 4.429 20 O -0.362 6.362 21 O -0.402 6.402 22 C -0.077 4.077 23 C -0.147 4.147 24 C -0.140 4.140 25 C -0.144 4.144 26 C -0.131 4.131 27 C -0.157 4.157 28 H 0.089 0.911 29 H 0.157 0.843 30 H 0.201 0.799 31 H 0.214 0.786 32 H 0.286 0.714 33 H 0.109 0.891 34 H 0.159 0.841 35 H 0.177 0.823 36 H 0.175 0.825 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.586 6.320 -4.946 14.094 hybrid contribution -0.176 -0.153 0.335 0.408 sum 11.410 6.167 -4.611 13.765 Atomic orbital electron populations 1.70019 1.08365 1.29429 1.46887 1.25955 0.95564 1.02764 0.92102 0.86582 0.80718 0.78588 0.81834 1.14767 1.19520 1.15454 1.21111 0.90440 0.94443 1.52443 0.95381 1.19443 0.93927 0.89481 0.80541 0.92059 1.86149 1.82075 1.43785 1.12881 1.18638 0.90566 0.91792 0.84419 1.21824 1.06945 0.94130 1.01797 1.21630 0.90714 1.01594 0.89467 1.21641 1.03298 0.90538 1.02246 1.17877 0.95623 0.90512 0.81501 1.84815 1.33968 1.68119 1.43757 1.21059 1.21354 0.83476 0.95990 1.43329 1.00001 1.03334 0.96195 1.94426 1.01020 1.91286 1.49512 1.94535 1.53073 1.37220 1.55411 1.19978 0.96383 0.94779 0.96591 1.20927 1.00404 0.94918 0.98447 1.21402 0.97876 1.01128 0.93584 1.21483 1.00039 0.92893 0.99986 1.21439 0.98463 0.96813 0.96372 1.21191 0.99460 0.99337 0.95749 0.91111 0.84295 0.79874 0.78557 0.71441 0.89114 0.84095 0.82342 0.82495 0.85692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.55 13.96 21.45 0.30 -52.25 16 2 C 0.04 2.09 5.24 84.66 0.44 2.54 16 3 Si 0.90 36.13 24.74 68.60 1.70 37.82 16 4 H -0.22 -7.58 6.49 99.48 0.65 -6.93 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 6 H -0.23 -8.39 4.90 99.48 0.49 -7.90 16 7 C -0.55 -30.81 8.70 25.60 0.22 -30.59 16 8 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 9 C 0.22 10.51 1.86 29.10 0.05 10.57 16 10 H 0.06 2.71 3.53 -2.38 -0.01 2.71 16 11 O -0.34 -16.55 8.82 -92.44 -0.81 -17.37 16 12 C 0.20 8.40 6.60 22.49 0.15 8.55 16 13 C -0.23 -8.49 8.73 22.38 0.20 -8.29 16 14 C -0.02 -0.42 10.04 22.24 0.22 -0.20 16 15 C -0.16 -3.55 9.98 22.38 0.22 -3.33 16 16 C 0.19 5.61 6.70 22.49 0.15 5.76 16 17 O -0.49 -12.00 13.26 -92.39 -1.22 -13.23 16 18 C -0.14 -5.35 6.18 36.56 0.23 -5.12 16 19 N 0.04 1.84 3.84 -46.01 -0.18 1.67 16 20 O -0.13 -5.36 19.26 18.88 0.36 -4.99 16 21 O -0.19 -8.75 19.25 18.89 0.36 -8.38 16 22 C -0.08 -3.41 4.96 -19.87 -0.10 -3.51 16 23 C -0.13 -5.52 9.36 22.27 0.21 -5.31 16 24 C -0.12 -4.09 10.05 22.27 0.22 -3.86 16 25 C -0.13 -3.53 10.05 22.27 0.22 -3.31 16 26 C -0.11 -3.32 10.05 22.27 0.22 -3.10 16 27 C -0.14 -5.18 9.67 22.27 0.22 -4.96 16 28 H 0.28 14.67 8.31 -92.71 -0.77 13.90 16 29 H 0.14 5.53 1.57 -2.91 0.00 5.53 16 30 H 0.18 3.20 8.06 -2.91 -0.02 3.17 16 31 H 0.20 2.50 8.06 -2.91 -0.02 2.47 16 32 H 0.42 5.70 9.06 -74.06 -0.67 5.03 16 33 H 0.09 4.29 7.74 -2.91 -0.02 4.27 16 34 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 35 H 0.16 3.07 8.06 -2.91 -0.02 3.04 16 36 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 37 H 0.13 4.35 6.23 -2.91 -0.02 4.33 16 Total: -1.00 -75.87 324.57 3.59 -72.28 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.20 Total: 28.63 kcal Atomic # 6 Polarization: -47.06 SS G_CDS: 2.88 Total: -44.18 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.12 Total: -50.59 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -1.31 Total: -43.97 kcal Atomic # 14 Polarization: 36.13 SS G_CDS: 1.70 Total: 37.82 kcal Total: -75.87 3.59 -72.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225619629.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.565 kcal (2) G-P(sol) polarization free energy of solvation -75.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds