Wall clock time and date at job start Tue Mar 31 2020 11:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00141 * 2 1 4 4 H 1.48506 * 109.47035 * 90.00143 * 3 2 1 5 5 H 1.48497 * 109.47279 * 209.99824 * 3 2 1 6 6 H 1.48504 * 109.47421 * 330.00134 * 3 2 1 7 7 C 1.37875 * 119.99824 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99896 * 183.39747 * 7 2 1 9 9 C 1.50701 * 120.00370 * 3.39565 * 7 2 1 10 10 H 1.09005 * 109.46590 * 332.64766 * 9 7 2 11 11 O 1.42894 * 109.47297 * 212.64746 * 9 7 2 12 12 C 1.35995 * 117.00285 * 89.99840 * 11 9 7 13 13 C 1.39190 * 120.07345 * 269.72490 * 12 11 9 14 14 O 1.36000 * 120.07245 * 359.97438 * 13 12 11 15 15 C 1.38524 * 119.85498 * 179.67659 * 13 12 11 16 16 C 1.38286 * 119.99656 * 0.61803 * 15 13 12 17 17 C 1.38203 * 120.14607 * 359.67932 * 16 15 13 18 18 C 1.38286 * 120.14730 * 0.02562 * 17 16 15 19 19 N 1.48017 * 119.99927 * 180.02562 * 18 17 16 20 20 O 1.21805 * 120.00219 * 359.96745 * 19 18 17 21 21 O 1.21803 * 119.99876 * 179.97438 * 19 18 17 22 22 C 1.50699 * 109.47088 * 92.64249 * 9 7 2 23 23 C 1.38243 * 119.99600 * 82.32539 * 22 9 7 24 24 C 1.38233 * 119.99382 * 179.80782 * 23 22 9 25 25 C 1.38233 * 120.00320 * 0.39947 * 24 23 22 26 26 C 1.38242 * 120.00072 * 359.85688 * 25 24 23 27 27 C 1.38232 * 120.00114 * 262.60119 * 22 9 7 28 28 H 0.97001 * 119.99958 * 174.80099 * 1 2 3 29 29 H 0.96703 * 114.00133 * 89.99997 * 14 13 12 30 30 H 1.07999 * 120.00295 * 180.32009 * 15 13 12 31 31 H 1.08001 * 119.92751 * 179.70137 * 16 15 13 32 32 H 1.08001 * 119.92937 * 180.02562 * 17 16 15 33 33 H 1.07992 * 120.00157 * 0.02562 * 23 22 9 34 34 H 1.08003 * 119.99751 * 180.23201 * 24 23 22 35 35 H 1.07998 * 120.00216 * 179.82931 * 25 24 23 36 36 H 1.07998 * 119.99829 * 179.97438 * 26 25 24 37 37 H 1.07999 * 119.99920 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4401 -0.7000 6 1 1.4467 2.6528 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0831 -1.1949 0.0549 9 6 1.2530 -2.4980 -0.0784 10 1 0.2578 -2.3697 0.3473 11 8 1.9597 -3.4997 0.6558 12 6 1.6472 -3.6360 1.9723 13 6 2.3385 -2.9034 2.9328 14 8 3.3284 -2.0499 2.5569 15 6 2.0119 -3.0408 4.2720 16 6 1.0096 -3.9140 4.6531 17 6 0.3274 -4.6461 3.6999 18 6 0.6443 -4.5090 2.3608 19 7 -0.0888 -5.2943 1.3426 20 8 -0.9710 -6.0616 1.6842 21 8 0.1900 -5.1733 0.1632 22 6 1.1320 -2.9228 -1.5192 23 6 2.1793 -3.5815 -2.1359 24 6 2.0668 -3.9747 -3.4563 25 6 0.9102 -3.7018 -4.1626 26 6 -0.1350 -3.0383 -3.5475 27 6 -0.0240 -2.6486 -2.2259 28 1 -0.4850 -0.8366 -0.0761 29 1 3.0241 -1.1501 2.3752 30 1 2.5433 -2.4696 5.0188 31 1 0.7592 -4.0238 5.6979 32 1 -0.4551 -5.3267 4.0014 33 1 3.0840 -3.7921 -1.5849 34 1 2.8835 -4.4927 -3.9370 35 1 0.8234 -4.0065 -5.1951 36 1 -1.0384 -2.8247 -4.0995 37 1 -0.8406 -2.1304 -1.7453 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226334782.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:46 Heat of formation + Delta-G solvation = -28.680630 kcal Electronic energy + Delta-G solvation = -26955.111635 eV Core-core repulsion = 23052.593519 eV Total energy + Delta-G solvation = -3902.518116 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.74631 -39.94528 -38.53484 -36.98643 -36.46792 -35.91015 -33.65871 -31.35924 -30.70570 -30.07467 -29.21348 -26.56657 -26.02573 -23.62505 -22.50772 -22.13754 -21.61290 -20.55210 -19.22448 -18.27483 -17.69817 -17.28012 -17.15084 -16.76176 -16.24586 -15.90643 -15.26723 -14.81344 -14.42120 -14.03904 -13.97477 -13.59465 -13.38025 -12.87212 -12.59017 -12.47923 -12.27789 -11.99493 -11.75506 -11.28440 -11.07530 -11.06242 -10.88468 -10.68561 -10.61069 -10.39605 -10.35352 -10.11683 -9.89246 -9.31106 -8.94565 -8.70907 -8.55013 -8.09931 -7.73471 -6.78051 -4.56879 0.16011 1.02890 1.67880 1.82638 2.22228 2.25185 3.16394 3.24089 3.30042 3.40780 4.03156 4.17953 4.28916 4.66321 4.68550 4.89538 4.95901 4.97807 5.19872 5.54575 5.62599 5.66603 5.76002 5.80075 5.98799 6.04616 6.12767 6.25727 6.30420 6.40125 6.47305 6.78420 6.80317 6.87298 7.24530 7.28128 7.46050 7.58327 7.76436 7.83571 7.97548 8.14749 8.28558 8.36871 9.15767 10.54076 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.010104 B = 0.007839 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.592319 B = 3571.033053 C = 5443.363679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.029 3.971 3 Si 1.069 2.931 4 H -0.283 1.283 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.612 4.612 8 H 0.073 0.927 9 C 0.246 3.754 10 H 0.031 0.969 11 O -0.320 6.320 12 C 0.178 3.822 13 C 0.104 3.896 14 O -0.475 6.475 15 C -0.093 4.093 16 C -0.125 4.125 17 C -0.063 4.063 18 C -0.073 4.073 19 N 0.033 4.967 20 O -0.197 6.197 21 O -0.118 6.118 22 C -0.022 4.022 23 C -0.097 4.097 24 C -0.128 4.128 25 C -0.144 4.144 26 C -0.122 4.122 27 C -0.113 4.113 28 H 0.271 0.729 29 H 0.404 0.596 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.949 -4.298 5.771 7.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.178 4.178 3 Si 0.896 3.104 4 H -0.210 1.210 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.649 4.649 8 H 0.092 0.908 9 C 0.194 3.806 10 H 0.049 0.951 11 O -0.237 6.237 12 C 0.130 3.870 13 C 0.057 3.943 14 O -0.288 6.288 15 C -0.112 4.112 16 C -0.144 4.144 17 C -0.083 4.083 18 C -0.157 4.157 19 N 0.551 4.449 20 O -0.402 6.402 21 O -0.344 6.344 22 C -0.022 4.022 23 C -0.116 4.116 24 C -0.146 4.146 25 C -0.162 4.162 26 C -0.140 4.140 27 C -0.132 4.132 28 H 0.084 0.916 29 H 0.265 0.735 30 H 0.163 0.837 31 H 0.164 0.836 32 H 0.168 0.832 33 H 0.133 0.867 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.524 -2.872 6.312 7.380 hybrid contribution -0.474 -1.268 -0.448 1.426 sum 2.051 -4.140 5.864 7.465 Atomic orbital electron populations 1.70831 1.06959 1.31184 1.43279 1.26036 0.96308 1.02830 0.92676 0.83529 0.75123 0.74532 0.77243 1.20981 1.20705 1.20547 1.22422 0.96024 0.90310 1.56104 0.90840 1.19165 0.92075 0.84501 0.84885 0.95111 1.86034 1.64191 1.59048 1.14417 1.18891 0.88874 0.91126 0.88090 1.18540 0.91147 0.94346 0.90302 1.84754 1.30375 1.24618 1.89075 1.21791 0.96025 0.97849 0.95496 1.20889 0.96706 0.97145 0.99684 1.20881 0.99322 0.98736 0.89314 1.21642 1.00689 1.03983 0.89403 1.43397 0.99672 0.99676 1.02137 1.94457 1.24976 1.34179 1.86607 1.94673 1.69684 1.69829 1.00188 1.19927 0.92617 0.93478 0.96200 1.20796 0.98684 0.98022 0.94065 1.20968 0.97557 1.01208 0.94848 1.20848 0.94510 1.01749 0.99134 1.20889 0.98449 0.99769 0.94937 1.20809 0.97359 1.00373 0.94620 0.91640 0.73532 0.83697 0.83624 0.83186 0.86656 0.87255 0.87348 0.87146 0.87040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.70 13.62 55.43 0.75 -22.94 16 2 C 0.03 0.71 5.46 -17.82 -0.10 0.62 16 3 Si 1.07 22.13 29.90 -169.99 -5.08 17.04 16 4 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.61 -14.97 6.84 -34.44 -0.24 -15.21 16 8 H 0.07 1.82 7.59 -52.49 -0.40 1.42 16 9 C 0.25 5.87 1.57 -29.03 -0.05 5.82 16 10 H 0.03 0.81 5.98 -51.93 -0.31 0.49 16 11 O -0.32 -7.31 7.11 -48.43 -0.34 -7.65 16 12 C 0.18 3.60 5.54 -39.12 -0.22 3.38 16 13 C 0.10 1.81 6.72 -39.12 -0.26 1.54 16 14 O -0.48 -8.47 12.48 -34.22 -0.43 -8.90 16 15 C -0.09 -1.22 9.98 -39.46 -0.39 -1.61 16 16 C -0.13 -1.47 10.04 -39.58 -0.40 -1.87 16 17 C -0.06 -0.91 9.55 -39.58 -0.38 -1.29 16 18 C -0.07 -1.36 6.86 -79.83 -0.55 -1.91 16 19 N 0.03 0.68 4.45 34.02 0.15 0.83 16 20 O -0.20 -3.90 18.45 -29.46 -0.54 -4.45 16 21 O -0.12 -2.69 15.65 -36.50 -0.57 -3.26 16 22 C -0.02 -0.50 4.00 -104.62 -0.42 -0.92 16 23 C -0.10 -2.10 9.36 -39.58 -0.37 -2.47 16 24 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 25 C -0.14 -2.58 10.05 -39.58 -0.40 -2.98 16 26 C -0.12 -2.35 10.05 -39.58 -0.40 -2.75 16 27 C -0.11 -2.51 9.62 -39.59 -0.38 -2.89 16 28 H 0.27 7.32 5.51 -40.82 -0.22 7.10 16 29 H 0.40 6.75 7.84 45.56 0.36 7.11 16 30 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.15 1.84 7.61 -52.49 -0.40 1.44 16 33 H 0.12 2.48 7.71 -52.49 -0.40 2.07 16 34 H 0.11 1.72 8.06 -52.48 -0.42 1.29 16 35 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 37 H 0.11 2.54 7.10 -52.49 -0.37 2.16 16 LS Contribution 328.29 15.07 4.95 4.95 Total: -1.00 -29.51 328.29 -8.72 -38.22 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -2.66 Total: 11.47 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -4.94 Total: -25.32 kcal Atomic # 7 Polarization: -23.02 SS G_CDS: 0.91 Total: -22.11 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -1.89 Total: -24.25 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.08 Total: 17.04 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.51 -8.72 -38.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226334782.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.541 kcal (2) G-P(sol) polarization free energy of solvation -29.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds