Wall clock time and date at job start Tue Mar 31 2020 11:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00141 * 2 1 4 4 H 1.48506 * 109.47035 * 90.00143 * 3 2 1 5 5 H 1.48497 * 109.47279 * 209.99824 * 3 2 1 6 6 H 1.48504 * 109.47421 * 330.00134 * 3 2 1 7 7 C 1.37875 * 119.99824 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99896 * 183.39747 * 7 2 1 9 9 C 1.50701 * 120.00370 * 3.39565 * 7 2 1 10 10 H 1.09005 * 109.46590 * 332.64766 * 9 7 2 11 11 O 1.42894 * 109.47297 * 212.64746 * 9 7 2 12 12 C 1.35995 * 117.00285 * 89.99840 * 11 9 7 13 13 C 1.39190 * 120.07345 * 269.72490 * 12 11 9 14 14 O 1.36000 * 120.07245 * 359.97438 * 13 12 11 15 15 C 1.38524 * 119.85498 * 179.67659 * 13 12 11 16 16 C 1.38286 * 119.99656 * 0.61803 * 15 13 12 17 17 C 1.38203 * 120.14607 * 359.67932 * 16 15 13 18 18 C 1.38286 * 120.14730 * 0.02562 * 17 16 15 19 19 N 1.48017 * 119.99927 * 180.02562 * 18 17 16 20 20 O 1.21805 * 120.00219 * 359.96745 * 19 18 17 21 21 O 1.21803 * 119.99876 * 179.97438 * 19 18 17 22 22 C 1.50699 * 109.47088 * 92.64249 * 9 7 2 23 23 C 1.38243 * 119.99600 * 82.32539 * 22 9 7 24 24 C 1.38233 * 119.99382 * 179.80782 * 23 22 9 25 25 C 1.38233 * 120.00320 * 0.39947 * 24 23 22 26 26 C 1.38242 * 120.00072 * 359.85688 * 25 24 23 27 27 C 1.38232 * 120.00114 * 262.60119 * 22 9 7 28 28 H 0.97001 * 119.99958 * 174.80099 * 1 2 3 29 29 H 0.96703 * 114.00133 * 89.99997 * 14 13 12 30 30 H 1.07999 * 120.00295 * 180.32009 * 15 13 12 31 31 H 1.08001 * 119.92751 * 179.70137 * 16 15 13 32 32 H 1.08001 * 119.92937 * 180.02562 * 17 16 15 33 33 H 1.07992 * 120.00157 * 0.02562 * 23 22 9 34 34 H 1.08003 * 119.99751 * 180.23201 * 24 23 22 35 35 H 1.07998 * 120.00216 * 179.82931 * 25 24 23 36 36 H 1.07998 * 119.99829 * 179.97438 * 26 25 24 37 37 H 1.07999 * 119.99920 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4401 -0.7000 6 1 1.4467 2.6528 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0831 -1.1949 0.0549 9 6 1.2530 -2.4980 -0.0784 10 1 0.2578 -2.3697 0.3473 11 8 1.9597 -3.4997 0.6558 12 6 1.6472 -3.6360 1.9723 13 6 2.3385 -2.9034 2.9328 14 8 3.3284 -2.0499 2.5569 15 6 2.0119 -3.0408 4.2720 16 6 1.0096 -3.9140 4.6531 17 6 0.3274 -4.6461 3.6999 18 6 0.6443 -4.5090 2.3608 19 7 -0.0888 -5.2943 1.3426 20 8 -0.9710 -6.0616 1.6842 21 8 0.1900 -5.1733 0.1632 22 6 1.1320 -2.9228 -1.5192 23 6 2.1793 -3.5815 -2.1359 24 6 2.0668 -3.9747 -3.4563 25 6 0.9102 -3.7018 -4.1626 26 6 -0.1350 -3.0383 -3.5475 27 6 -0.0240 -2.6486 -2.2259 28 1 -0.4850 -0.8366 -0.0761 29 1 3.0241 -1.1501 2.3752 30 1 2.5433 -2.4696 5.0188 31 1 0.7592 -4.0238 5.6979 32 1 -0.4551 -5.3267 4.0014 33 1 3.0840 -3.7921 -1.5849 34 1 2.8835 -4.4927 -3.9370 35 1 0.8234 -4.0065 -5.1951 36 1 -1.0384 -2.8247 -4.0995 37 1 -0.8406 -2.1304 -1.7453 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226334782.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:45 Heat of formation + Delta-G solvation = -45.143158 kcal Electronic energy + Delta-G solvation = -26955.825504 eV Core-core repulsion = 23052.593519 eV Total energy + Delta-G solvation = -3903.231985 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.28742 -41.36344 -40.09452 -38.50960 -37.79711 -37.49983 -35.46411 -32.80250 -32.22217 -31.66941 -30.54124 -28.30532 -27.52518 -25.38919 -23.86880 -23.57427 -23.13786 -22.18950 -20.66940 -19.84564 -19.35010 -18.76455 -18.69715 -18.28593 -17.81538 -17.26107 -16.60926 -16.28154 -15.83100 -15.73586 -15.48264 -15.24237 -14.98170 -14.24690 -14.12597 -13.77931 -13.70133 -13.41341 -13.30210 -12.82939 -12.72037 -12.66808 -12.41050 -12.29589 -12.24896 -12.03359 -11.95923 -11.73741 -11.47432 -10.75183 -10.55584 -10.48577 -9.88813 -9.70859 -9.39097 -8.75099 -6.55109 -1.27013 -0.21913 0.24436 0.38305 0.61031 0.66776 1.49661 1.58914 1.76974 2.03878 2.43470 2.66325 2.90896 3.05637 3.13045 3.59689 3.66499 3.89133 3.91545 4.06542 4.19731 4.25648 4.33288 4.37014 4.51060 4.65270 4.81195 4.82950 4.88978 4.94015 5.14355 5.20101 5.26242 5.36546 5.65215 5.68168 5.69258 5.89353 5.94595 6.23509 6.36436 6.42025 6.53767 6.68619 7.27011 8.55491 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.010104 B = 0.007839 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.592319 B = 3571.033053 C = 5443.363679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.009 4.009 3 Si 1.112 2.888 4 H -0.254 1.254 5 H -0.275 1.275 6 H -0.289 1.289 7 C -0.609 4.609 8 H 0.064 0.936 9 C 0.262 3.738 10 H -0.006 1.006 11 O -0.337 6.337 12 C 0.127 3.873 13 C 0.079 3.921 14 O -0.485 6.485 15 C -0.069 4.069 16 C -0.095 4.095 17 C -0.058 4.058 18 C -0.096 4.096 19 N 0.033 4.967 20 O -0.164 6.164 21 O -0.192 6.192 22 C -0.047 4.047 23 C -0.120 4.120 24 C -0.122 4.122 25 C -0.135 4.135 26 C -0.122 4.122 27 C -0.141 4.141 28 H 0.256 0.744 29 H 0.404 0.596 30 H 0.189 0.811 31 H 0.207 0.793 32 H 0.178 0.822 33 H 0.103 0.897 34 H 0.145 0.855 35 H 0.154 0.846 36 H 0.139 0.861 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.502 -4.647 7.674 9.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.210 4.210 3 Si 0.933 3.067 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.215 1.215 7 C -0.646 4.646 8 H 0.082 0.918 9 C 0.209 3.791 10 H 0.012 0.988 11 O -0.254 6.254 12 C 0.080 3.920 13 C 0.032 3.968 14 O -0.298 6.298 15 C -0.088 4.088 16 C -0.113 4.113 17 C -0.077 4.077 18 C -0.180 4.180 19 N 0.546 4.454 20 O -0.382 6.382 21 O -0.400 6.400 22 C -0.047 4.047 23 C -0.138 4.138 24 C -0.140 4.140 25 C -0.153 4.153 26 C -0.140 4.140 27 C -0.160 4.160 28 H 0.067 0.933 29 H 0.264 0.736 30 H 0.206 0.794 31 H 0.224 0.776 32 H 0.195 0.805 33 H 0.121 0.879 34 H 0.163 0.837 35 H 0.172 0.828 36 H 0.157 0.843 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.160 -3.203 8.117 9.280 hybrid contribution -0.718 -1.353 -0.798 1.728 sum 2.442 -4.556 7.319 8.960 Atomic orbital electron populations 1.70927 1.07932 1.30269 1.46127 1.27266 0.96187 1.05826 0.91735 0.83002 0.74006 0.70914 0.78794 1.17879 1.19980 1.21535 1.22462 0.95367 0.91081 1.55714 0.91801 1.18822 0.90001 0.84792 0.85482 0.98841 1.85967 1.64264 1.58863 1.16349 1.19438 0.91397 0.93684 0.87474 1.18943 0.91585 0.94496 0.91749 1.84733 1.30880 1.24768 1.89410 1.22317 0.95401 0.97115 0.93931 1.21619 0.94055 0.93927 1.01712 1.21456 0.99725 0.99009 0.87492 1.22002 1.01089 1.04562 0.90366 1.43754 0.99570 0.99590 1.02441 1.94378 1.24178 1.33205 1.86398 1.94693 1.71682 1.72143 1.01458 1.20029 0.93702 0.94894 0.96116 1.20851 0.98044 0.99199 0.95694 1.21378 0.99006 1.00040 0.93537 1.21332 0.93136 0.99881 1.00933 1.21266 1.00132 0.98892 0.93718 1.20845 0.96847 1.01912 0.96348 0.93257 0.73597 0.79388 0.77595 0.80472 0.87855 0.83695 0.82806 0.84294 0.89298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.78 13.62 21.45 0.29 -51.49 16 2 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 3 Si 1.11 45.44 29.90 68.60 2.05 47.49 16 4 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.61 -31.72 6.84 25.60 0.18 -31.54 16 8 H 0.06 3.36 7.59 -2.91 -0.02 3.34 16 9 C 0.26 13.58 1.57 29.10 0.05 13.63 16 10 H -0.01 -0.36 5.98 -2.38 -0.01 -0.37 16 11 O -0.34 -16.69 7.11 -66.05 -0.47 -17.16 16 12 C 0.13 5.38 5.54 22.57 0.13 5.51 16 13 C 0.08 2.74 6.72 22.57 0.15 2.89 16 14 O -0.49 -17.63 12.48 -79.70 -1.00 -18.62 16 15 C -0.07 -1.57 9.98 22.35 0.22 -1.34 16 16 C -0.10 -1.74 10.04 22.27 0.22 -1.52 16 17 C -0.06 -1.51 9.55 22.27 0.21 -1.29 16 18 C -0.10 -3.65 6.86 36.45 0.25 -3.40 16 19 N 0.03 1.44 4.45 -46.27 -0.21 1.23 16 20 O -0.16 -6.54 18.45 18.88 0.35 -6.20 16 21 O -0.19 -9.46 15.65 25.61 0.40 -9.06 16 22 C -0.05 -2.33 4.00 -19.86 -0.08 -2.41 16 23 C -0.12 -5.43 9.36 22.27 0.21 -5.22 16 24 C -0.12 -4.49 10.05 22.27 0.22 -4.27 16 25 C -0.14 -4.61 10.05 22.27 0.22 -4.38 16 26 C -0.12 -4.72 10.05 22.27 0.22 -4.50 16 27 C -0.14 -6.70 9.62 22.27 0.21 -6.49 16 28 H 0.26 15.05 5.51 -92.71 -0.51 14.54 16 29 H 0.40 14.00 7.84 -74.05 -0.58 13.42 16 30 H 0.19 2.66 8.06 -2.91 -0.02 2.64 16 31 H 0.21 1.47 8.06 -2.91 -0.02 1.44 16 32 H 0.18 3.62 7.61 -2.91 -0.02 3.60 16 33 H 0.10 4.79 7.71 -2.91 -0.02 4.77 16 34 H 0.15 4.23 8.06 -2.91 -0.02 4.21 16 35 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 36 H 0.14 4.45 8.06 -2.91 -0.02 4.42 16 37 H 0.09 4.50 7.10 -2.91 -0.02 4.48 16 Total: -1.00 -72.97 328.29 5.12 -67.86 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: 0.81 Total: 30.32 kcal Atomic # 6 Polarization: -47.25 SS G_CDS: 2.88 Total: -44.37 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: 0.09 Total: -50.26 kcal Atomic # 8 Polarization: -50.32 SS G_CDS: -0.72 Total: -51.04 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.05 Total: 47.49 kcal Total: -72.97 5.12 -67.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226334782.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.712 kcal (2) G-P(sol) polarization free energy of solvation -72.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds