Wall clock time and date at job start Tue Mar 31 2020 11:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35966 * 116.99932 * 2 1 4 4 C 1.38708 * 120.01336 * 359.97438 * 3 2 1 5 5 C 1.38217 * 120.07541 * 180.02562 * 4 3 2 6 6 C 1.38337 * 120.10187 * 0.02562 * 5 4 3 7 7 F 1.35104 * 119.99339 * 180.02562 * 6 5 4 8 8 C 1.38889 * 120.02454 * 0.03954 * 6 5 4 9 9 O 1.35980 * 120.04205 * 179.97438 * 8 6 5 10 10 C 1.42893 * 117.00240 * 89.99733 * 9 8 6 11 11 H 1.09003 * 110.88253 * 32.42997 * 10 9 8 12 12 C 1.55157 * 111.00503 * 156.35110 * 10 9 8 13 13 C 1.54332 * 103.02249 * 153.38399 * 12 10 9 14 14 N 1.47026 * 107.26211 * 338.13959 * 13 12 10 15 15 C 1.36936 * 125.64605 * 178.85096 * 14 13 12 16 16 H 1.08000 * 120.00166 * 174.40973 * 15 14 13 17 17 C 1.38820 * 119.99958 * 354.13039 * 15 14 13 18 18 N 1.31619 * 119.99959 * 7.05077 * 17 15 14 19 19 Si 1.86800 * 119.99940 * 187.04361 * 17 15 14 20 20 H 1.48496 * 109.47026 * 94.98992 * 19 17 15 21 21 H 1.48495 * 109.46947 * 214.98885 * 19 17 15 22 22 H 1.48503 * 109.47295 * 334.99239 * 19 17 15 23 23 C 1.47421 * 108.70366 * 358.58629 * 14 13 12 24 24 C 1.38681 * 119.92154 * 0.25549 * 8 6 5 25 25 Cl 1.73601 * 120.05211 * 179.70206 * 24 8 6 26 26 H 1.08996 * 109.46813 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47433 * 300.00703 * 1 2 3 28 28 H 1.08995 * 109.46656 * 60.00815 * 1 2 3 29 29 H 1.08001 * 119.96103 * 0.03359 * 4 3 2 30 30 H 1.08005 * 119.94797 * 180.02562 * 5 4 3 31 31 H 1.08998 * 110.72047 * 271.94059 * 12 10 9 32 32 H 1.09001 * 110.72051 * 35.03680 * 12 10 9 33 33 H 1.08999 * 109.99368 * 218.66880 * 13 12 10 34 34 H 1.08999 * 109.78130 * 97.49414 * 13 12 10 35 35 H 0.96994 * 119.99988 * 179.97438 * 18 17 15 36 36 H 1.09008 * 110.36516 * 143.19385 * 23 14 13 37 37 H 1.08998 * 110.36626 * 265.40279 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2911 2.3749 -0.0005 5 6 1.9172 3.6072 -0.0011 6 6 3.2985 3.6835 -0.0016 7 9 3.9082 4.8891 -0.0016 8 6 4.0587 2.5212 -0.0024 9 8 5.4165 2.5959 -0.0035 10 6 6.0653 2.6313 1.2692 11 1 5.5072 2.0535 2.0060 12 6 7.5296 2.1299 1.1610 13 6 8.2309 2.8494 2.3325 14 7 7.4180 4.0269 2.6708 15 6 7.6857 4.9200 3.6737 16 1 7.0764 5.8046 3.7858 17 6 8.7366 4.6854 4.5499 18 7 9.5604 3.6815 4.3356 19 14 8.9816 5.7946 6.0328 20 1 8.3241 5.1885 7.2183 21 1 10.4341 5.9518 6.2987 22 1 8.3813 7.1253 5.7602 23 6 6.2707 4.0903 1.7473 24 6 3.4315 1.2843 -0.0081 25 17 4.3785 -0.1706 -0.0170 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5137 -0.8900 29 1 0.2125 2.3179 -0.0004 30 1 1.3271 4.5118 -0.0011 31 1 7.5771 1.0481 1.2860 32 1 7.9695 2.4264 0.2088 33 1 9.2307 3.1630 2.0323 34 1 8.2920 2.1818 3.1920 35 1 10.2949 3.5178 4.9476 36 1 5.3827 4.4469 2.2695 37 1 6.4993 4.7397 0.9023 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227357061.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:36 Heat of formation + Delta-G solvation = -81.996199 kcal Electronic energy + Delta-G solvation = -24257.758556 eV Core-core repulsion = 20362.868444 eV Total energy + Delta-G solvation = -3894.890113 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.91579 -41.47181 -40.32302 -38.63041 -37.49686 -37.21844 -34.31802 -31.79598 -31.25199 -30.36953 -28.99698 -28.07435 -26.51456 -24.26012 -23.44232 -22.10869 -22.00040 -19.88774 -19.05444 -18.56355 -18.48363 -17.86935 -17.14880 -16.76316 -16.51295 -16.18593 -15.99552 -15.89095 -15.60739 -15.17419 -14.98208 -14.32425 -14.12753 -13.90927 -13.86924 -13.82499 -13.20164 -13.04392 -12.91502 -12.69885 -12.54047 -12.27197 -12.17221 -12.03773 -11.96201 -11.88250 -11.80431 -11.59432 -11.00804 -10.72539 -9.94291 -9.23963 -8.98027 -7.89826 -5.26586 -0.34179 -0.10130 0.99265 1.45569 1.47950 1.57180 1.86738 2.15347 2.45939 2.62542 3.12321 3.29069 3.61096 3.63892 3.67961 3.78311 3.88995 3.98192 4.02379 4.11948 4.40512 4.47586 4.51477 4.63305 4.68539 4.78617 4.80360 4.86354 4.92452 4.93683 4.95113 5.31078 5.39597 5.55832 5.66835 6.10996 6.16869 6.26897 7.04191 7.68751 8.33993 9.21229 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.019897 B = 0.003731 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.916792 B = 7502.599191 C = 8048.183925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.318 6.318 3 C 0.141 3.859 4 C -0.160 4.160 5 C -0.083 4.083 6 C 0.035 3.965 7 F -0.138 7.138 8 C 0.088 3.912 9 O -0.317 6.317 10 C 0.098 3.902 11 H 0.073 0.927 12 C -0.120 4.120 13 C 0.187 3.813 14 N -0.624 5.624 15 C -0.251 4.251 16 H 0.081 0.919 17 C -0.060 4.060 18 N -0.948 5.948 19 Si 0.982 3.018 20 H -0.284 1.284 21 H -0.292 1.292 22 H -0.268 1.268 23 C 0.124 3.876 24 C -0.088 4.088 25 Cl -0.042 7.042 26 H 0.119 0.881 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.194 0.806 30 H 0.183 0.817 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.015 0.985 34 H 0.026 0.974 35 H 0.250 0.750 36 H 0.039 0.961 37 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.927 -6.922 -10.833 26.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.094 3.906 4 C -0.178 4.178 5 C -0.101 4.101 6 C 0.015 3.985 7 F -0.116 7.116 8 C 0.042 3.958 9 O -0.233 6.233 10 C 0.042 3.958 11 H 0.091 0.909 12 C -0.158 4.158 13 C 0.062 3.938 14 N -0.352 5.352 15 C -0.379 4.379 16 H 0.099 0.901 17 C -0.254 4.254 18 N -0.596 5.596 19 Si 0.810 3.190 20 H -0.211 1.211 21 H -0.218 1.218 22 H -0.192 1.192 23 C -0.002 4.002 24 C -0.116 4.116 25 Cl -0.013 7.013 26 H 0.138 0.862 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.211 0.789 30 H 0.200 0.800 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.033 0.967 34 H 0.044 0.956 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -22.476 -7.182 -10.838 25.965 hybrid contribution 0.821 0.720 0.929 1.434 sum -21.655 -6.461 -9.909 24.675 Atomic orbital electron populations 1.23561 0.75112 1.06287 1.03299 1.86189 1.24425 1.24815 1.87722 1.18597 0.89138 0.86891 0.95997 1.21502 1.02511 0.88930 1.04853 1.21352 0.90477 1.01062 0.97242 1.18149 0.92094 0.79577 1.08709 1.91516 1.83927 1.41989 1.94194 1.18394 0.84379 0.90453 1.02584 1.86096 1.14288 1.93323 1.29603 1.23450 0.93582 0.96290 0.82511 0.90913 1.22824 0.92407 1.00890 0.99701 1.20956 0.92490 0.87371 0.92968 1.44647 1.25671 1.28821 1.36032 1.19442 1.12564 1.01522 1.04398 0.90072 1.25717 0.97526 1.00254 1.01856 1.70169 1.17871 1.33014 1.38506 0.85013 0.76670 0.78273 0.79082 1.21066 1.21825 1.19249 1.21958 0.90398 0.95169 0.92640 1.20440 0.90477 0.87908 1.12773 1.98369 1.72100 1.33971 1.96898 0.86240 0.90640 0.90311 0.78945 0.80009 0.89146 0.90374 0.96702 0.95597 0.94062 0.94218 0.95804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.19 16 2 O -0.32 -5.69 9.95 -93.17 -0.93 -6.61 16 3 C 0.14 2.91 6.68 22.50 0.15 3.06 16 4 C -0.16 -2.26 9.03 22.38 0.20 -2.06 16 5 C -0.08 -1.45 10.01 22.29 0.22 -1.23 16 6 C 0.03 0.96 7.31 22.45 0.16 1.13 16 7 F -0.14 -4.44 16.49 44.97 0.74 -3.70 16 8 C 0.09 2.74 5.63 22.53 0.13 2.87 16 9 O -0.32 -11.62 9.19 -93.33 -0.86 -12.47 16 10 C 0.10 3.90 3.56 31.98 0.11 4.01 16 11 H 0.07 2.89 7.99 -2.39 -0.02 2.87 16 12 C -0.12 -4.91 6.68 31.79 0.21 -4.70 16 13 C 0.19 9.74 5.39 86.73 0.47 10.21 16 14 N -0.62 -34.27 3.39 -691.97 -2.35 -36.62 16 15 C -0.25 -14.68 10.26 84.04 0.86 -13.82 16 16 H 0.08 4.57 7.84 -2.91 -0.02 4.54 16 17 C -0.06 -3.50 5.48 84.86 0.47 -3.03 16 18 N -0.95 -57.89 10.36 21.65 0.22 -57.67 16 19 Si 0.98 46.47 29.56 68.60 2.03 48.49 16 20 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 21 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 C 0.12 5.73 6.35 86.85 0.55 6.29 16 24 C -0.09 -2.42 6.34 22.49 0.14 -2.28 16 25 Cl -0.04 -1.21 28.04 -2.72 -0.08 -1.29 16 26 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.08 0.30 7.66 -2.39 -0.02 0.29 16 28 H 0.08 0.25 7.66 -2.39 -0.02 0.23 16 29 H 0.19 0.94 6.29 -2.91 -0.02 0.92 16 30 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 31 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 32 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 33 H 0.01 0.85 7.64 -2.39 -0.02 0.83 16 34 H 0.03 1.47 7.26 -2.39 -0.02 1.45 16 35 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 36 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -73.05 330.28 4.68 -68.38 By element: Atomic # 1 Polarization: -1.24 SS G_CDS: 1.10 Total: -0.14 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 4.79 Total: 1.63 kcal Atomic # 7 Polarization: -92.16 SS G_CDS: -2.12 Total: -94.28 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -1.78 Total: -19.09 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.74 Total: -3.70 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.49 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.08 Total: -1.29 kcal Total: -73.05 4.68 -68.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227357061.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.618 kcal (2) G-P(sol) polarization free energy of solvation -73.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds