Wall clock time and date at job start Tue Mar 31 2020 11:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39743 * 120.08292 * 97.23367 * 3 2 1 5 5 C 1.37957 * 119.91769 * 179.97438 * 4 3 2 6 6 F 1.35101 * 119.95631 * 179.97438 * 5 4 3 7 7 C 1.39060 * 120.08518 * 359.97427 * 5 4 3 8 8 O 1.35859 * 119.92299 * 180.02562 * 7 5 4 9 9 C 1.42905 * 117.00158 * 89.99637 * 8 7 5 10 10 H 1.09001 * 109.47103 * 330.00692 * 9 8 7 11 11 C 1.50701 * 109.46937 * 90.00328 * 9 8 7 12 12 H 1.07999 * 119.99742 * 240.00092 * 11 9 8 13 13 C 1.37878 * 120.00001 * 59.99939 * 11 9 8 14 14 N 1.31507 * 120.00096 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99524 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46963 * 90.00517 * 15 13 11 17 17 H 1.48505 * 109.46730 * 210.00156 * 15 13 11 18 18 H 1.48499 * 109.47520 * 330.00255 * 15 13 11 19 19 C 1.50703 * 109.47264 * 210.00230 * 9 8 7 20 20 C 1.38230 * 119.99758 * 324.72545 * 19 9 8 21 21 C 1.38243 * 119.99793 * 179.78660 * 20 19 9 22 22 C 1.38237 * 119.99712 * 0.44540 * 21 20 19 23 23 C 1.38240 * 119.99904 * 359.80633 * 22 21 20 24 24 C 1.38227 * 119.99854 * 359.97438 * 23 22 21 25 25 C 1.39068 * 120.16290 * 0.29345 * 7 5 4 26 26 F 1.35093 * 119.96112 * 179.72752 * 25 7 5 27 27 C 1.37965 * 120.07792 * 359.45721 * 25 7 5 28 28 H 1.08003 * 120.03814 * 359.97438 * 4 3 2 29 29 H 0.96997 * 119.99806 * 179.97438 * 14 13 11 30 30 H 1.07997 * 120.00422 * 0.02562 * 20 19 9 31 31 H 1.07995 * 120.00035 * 180.27259 * 21 20 19 32 32 H 1.07999 * 120.00081 * 179.83438 * 22 21 20 33 33 H 1.08003 * 119.99689 * 179.97438 * 23 22 21 34 34 H 1.08010 * 119.99640 * 179.97438 * 24 23 22 35 35 H 1.07997 * 120.04476 * 180.29295 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2684 0.1532 -1.1996 5 6 4.6480 0.1539 -1.1956 6 9 5.3259 0.3008 -2.3549 7 6 5.3417 0.0035 0.0002 8 8 6.7003 0.0051 0.0005 9 6 7.3475 1.2691 0.1602 10 1 6.7186 2.0549 -0.2583 11 6 7.5751 1.5352 1.6260 12 1 7.1342 2.4040 2.0919 13 6 8.3462 0.6694 2.3722 14 7 8.8835 -0.3883 1.8048 15 14 8.6288 0.9997 4.1890 16 1 7.5618 0.3402 4.9838 17 1 9.9518 0.4578 4.5906 18 1 8.5975 2.4635 4.4368 19 6 8.6721 1.2497 -0.5584 20 6 9.4219 0.0890 -0.5942 21 6 10.6348 0.0699 -1.2571 22 6 11.1021 1.2141 -1.8763 23 6 10.3546 2.3763 -1.8359 24 6 9.1397 2.3940 -1.1769 25 6 4.6482 -0.1542 1.1953 26 9 5.3262 -0.3055 2.3539 27 6 3.2685 -0.1507 1.1998 28 1 2.7303 0.2705 -2.1286 29 1 9.4262 -0.9972 2.3297 30 1 9.0584 -0.8040 -0.1077 31 1 11.2186 -0.8381 -1.2889 32 1 12.0510 1.2000 -2.3919 33 1 10.7199 3.2703 -2.3193 34 1 8.5558 3.3021 -1.1450 35 1 2.7305 -0.2684 2.1288 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228077010.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:24 Heat of formation + Delta-G solvation = -31.682689 kcal Electronic energy + Delta-G solvation = -25671.397209 eV Core-core repulsion = 21657.661398 eV Total energy + Delta-G solvation = -4013.735811 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.62297 -48.24209 -39.25395 -38.35113 -37.08684 -35.95035 -33.23676 -30.91547 -30.32965 -29.90541 -29.53073 -27.04218 -24.05293 -22.94310 -22.69144 -21.46578 -20.34862 -19.27072 -17.70056 -17.26026 -16.28839 -16.19308 -16.14901 -15.50242 -15.37701 -15.00375 -14.77237 -14.59060 -14.23728 -13.80802 -13.64535 -13.40195 -13.33624 -13.28696 -13.06222 -12.46856 -12.19969 -12.10660 -12.07687 -11.73647 -11.59122 -11.30189 -11.06582 -10.99635 -10.59250 -10.34338 -10.05486 -9.62013 -8.97393 -8.70509 -8.65805 -8.30074 -7.86062 -7.57894 -6.17067 -4.49464 0.59988 1.11597 2.36229 2.53295 2.55811 2.76758 3.17626 3.24267 3.26092 3.59595 3.66204 4.17385 4.19474 4.52764 4.67276 4.90515 4.91434 4.96073 5.05803 5.48797 5.66887 5.75137 5.86479 5.97370 5.99345 6.05717 6.21090 6.23048 6.39890 6.55563 6.75771 6.78909 6.98445 7.20217 7.38138 7.40554 7.47422 7.67273 7.80070 7.91452 8.17572 8.30650 8.68774 9.24291 10.65980 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.013461 B = 0.005578 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.624022 B = 5018.924101 C = 6599.179713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C 0.269 3.731 3 C -0.013 4.013 4 C -0.108 4.108 5 C 0.083 3.917 6 F -0.122 7.122 7 C 0.106 3.894 8 O -0.307 6.307 9 C 0.248 3.752 10 H 0.026 0.974 11 C -0.534 4.534 12 H 0.067 0.933 13 C 0.092 3.908 14 N -0.836 5.836 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.272 1.272 19 C -0.043 4.043 20 C -0.045 4.045 21 C -0.151 4.151 22 C -0.142 4.142 23 C -0.148 4.148 24 C -0.125 4.125 25 C 0.114 3.886 26 F -0.100 7.100 27 C -0.111 4.111 28 H 0.146 0.854 29 H 0.267 0.733 30 H 0.164 0.836 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.974 0.211 -4.145 5.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.046 4.046 3 C -0.017 4.017 4 C -0.130 4.130 5 C 0.063 3.937 6 F -0.100 7.100 7 C 0.056 3.944 8 O -0.224 6.224 9 C 0.196 3.804 10 H 0.044 0.956 11 C -0.570 4.570 12 H 0.086 0.914 13 C -0.116 4.116 14 N -0.469 5.469 15 Si 0.719 3.281 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.196 1.196 19 C -0.043 4.043 20 C -0.064 4.064 21 C -0.170 4.170 22 C -0.161 4.161 23 C -0.166 4.166 24 C -0.143 4.143 25 C 0.093 3.907 26 F -0.078 7.078 27 C -0.132 4.132 28 H 0.164 0.836 29 H 0.078 0.922 30 H 0.181 0.819 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.397 -0.082 -4.104 6.781 hybrid contribution 1.033 0.409 1.120 1.578 sum -4.364 0.328 -2.985 5.297 Atomic orbital electron populations 1.81243 1.11860 1.09392 1.07371 1.25372 0.92209 0.93395 0.93620 1.15123 0.84292 1.08881 0.93385 1.20881 0.91868 1.01910 0.98314 1.17597 0.89171 1.04811 0.82126 1.91539 1.80014 1.93034 1.45408 1.19121 0.88062 0.97519 0.89701 1.86384 1.09388 1.34610 1.92022 1.19075 0.87119 0.79499 0.94664 0.95561 1.21436 1.32210 1.10348 0.92965 0.91447 1.24970 0.93412 0.94412 0.98830 1.69802 1.29949 1.12001 1.35131 0.86571 0.77932 0.78925 0.84645 1.19880 1.20839 1.19646 1.19737 0.97331 0.93296 0.93976 1.21850 0.92280 1.00906 0.91375 1.21153 0.98074 0.97354 1.00400 1.20857 0.99255 0.93976 1.01985 1.20707 0.95894 0.97483 1.02521 1.20747 0.96726 0.97651 0.99163 1.17540 0.88670 1.01868 0.82578 1.91646 1.79670 1.92074 1.44442 1.21028 0.92198 1.01666 0.98328 0.83613 0.92209 0.81877 0.87859 0.88115 0.87806 0.87668 0.83556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.02 18.54 41.84 0.78 -5.25 16 2 C 0.27 3.37 15.33 -22.47 -0.34 3.03 16 3 C -0.01 -0.16 5.74 -106.84 -0.61 -0.77 16 4 C -0.11 -1.34 9.72 -39.12 -0.38 -1.72 16 5 C 0.08 1.31 7.30 -39.38 -0.29 1.03 16 6 F -0.12 -2.05 17.10 2.25 0.04 -2.02 16 7 C 0.11 1.96 5.56 -38.97 -0.22 1.75 16 8 O -0.31 -6.84 7.96 -19.30 -0.15 -6.99 16 9 C 0.25 5.63 2.65 -29.03 -0.08 5.56 16 10 H 0.03 0.57 7.82 -51.93 -0.41 0.17 16 11 C -0.53 -12.98 8.03 -34.44 -0.28 -13.26 16 12 H 0.07 1.64 7.81 -52.49 -0.41 1.23 16 13 C 0.09 2.25 5.24 -17.82 -0.09 2.16 16 14 N -0.84 -20.65 8.50 55.43 0.47 -20.18 16 15 Si 0.89 19.56 29.54 -169.99 -5.02 14.54 16 16 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 19 C -0.04 -0.96 4.80 -104.63 -0.50 -1.46 16 20 C -0.05 -1.01 7.46 -39.58 -0.30 -1.31 16 21 C -0.15 -3.01 10.05 -39.58 -0.40 -3.41 16 22 C -0.14 -2.61 10.05 -39.58 -0.40 -3.01 16 23 C -0.15 -2.72 10.05 -39.58 -0.40 -3.12 16 24 C -0.12 -2.53 9.68 -39.59 -0.38 -2.91 16 25 C 0.11 1.96 7.30 -39.37 -0.29 1.67 16 26 F -0.10 -2.02 16.24 2.25 0.04 -1.98 16 27 C -0.11 -1.46 9.72 -39.12 -0.38 -1.84 16 28 H 0.15 1.42 8.06 -52.48 -0.42 1.00 16 29 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 30 H 0.16 3.95 5.50 -52.49 -0.29 3.66 16 31 H 0.10 1.83 8.06 -52.49 -0.42 1.40 16 32 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.10 1.61 8.06 -52.48 -0.42 1.18 16 34 H 0.11 1.94 8.06 -52.48 -0.42 1.52 16 35 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 325.65 15.07 4.91 4.91 Total: -1.00 -25.98 325.65 -7.05 -33.04 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -2.78 Total: 1.55 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -5.33 Total: -17.62 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 1.25 Total: -25.43 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.15 Total: -6.99 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.08 Total: -4.00 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -25.98 -7.05 -33.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228077010.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.353 kcal (2) G-P(sol) polarization free energy of solvation -25.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds