Wall clock time and date at job start Tue Mar 31 2020 11:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39743 * 120.08292 * 97.23367 * 3 2 1 5 5 C 1.37957 * 119.91769 * 179.97438 * 4 3 2 6 6 F 1.35101 * 119.95631 * 179.97438 * 5 4 3 7 7 C 1.39060 * 120.08518 * 359.97427 * 5 4 3 8 8 O 1.35859 * 119.92299 * 180.02562 * 7 5 4 9 9 C 1.42905 * 117.00158 * 89.99637 * 8 7 5 10 10 H 1.09001 * 109.47103 * 330.00692 * 9 8 7 11 11 C 1.50701 * 109.46937 * 90.00328 * 9 8 7 12 12 H 1.07999 * 119.99742 * 240.00092 * 11 9 8 13 13 C 1.37878 * 120.00001 * 59.99939 * 11 9 8 14 14 N 1.31507 * 120.00096 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99524 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46963 * 90.00517 * 15 13 11 17 17 H 1.48505 * 109.46730 * 210.00156 * 15 13 11 18 18 H 1.48499 * 109.47520 * 330.00255 * 15 13 11 19 19 C 1.50703 * 109.47264 * 210.00230 * 9 8 7 20 20 C 1.38230 * 119.99758 * 324.72545 * 19 9 8 21 21 C 1.38243 * 119.99793 * 179.78660 * 20 19 9 22 22 C 1.38237 * 119.99712 * 0.44540 * 21 20 19 23 23 C 1.38240 * 119.99904 * 359.80633 * 22 21 20 24 24 C 1.38227 * 119.99854 * 359.97438 * 23 22 21 25 25 C 1.39068 * 120.16290 * 0.29345 * 7 5 4 26 26 F 1.35093 * 119.96112 * 179.72752 * 25 7 5 27 27 C 1.37965 * 120.07792 * 359.45721 * 25 7 5 28 28 H 1.08003 * 120.03814 * 359.97438 * 4 3 2 29 29 H 0.96997 * 119.99806 * 179.97438 * 14 13 11 30 30 H 1.07997 * 120.00422 * 0.02562 * 20 19 9 31 31 H 1.07995 * 120.00035 * 180.27259 * 21 20 19 32 32 H 1.07999 * 120.00081 * 179.83438 * 22 21 20 33 33 H 1.08003 * 119.99689 * 179.97438 * 23 22 21 34 34 H 1.08010 * 119.99640 * 179.97438 * 24 23 22 35 35 H 1.07997 * 120.04476 * 180.29295 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2684 0.1532 -1.1996 5 6 4.6480 0.1539 -1.1956 6 9 5.3259 0.3008 -2.3549 7 6 5.3417 0.0035 0.0002 8 8 6.7003 0.0051 0.0005 9 6 7.3475 1.2691 0.1602 10 1 6.7186 2.0549 -0.2583 11 6 7.5751 1.5352 1.6260 12 1 7.1342 2.4040 2.0919 13 6 8.3462 0.6694 2.3722 14 7 8.8835 -0.3883 1.8048 15 14 8.6288 0.9997 4.1890 16 1 7.5618 0.3402 4.9838 17 1 9.9518 0.4578 4.5906 18 1 8.5975 2.4635 4.4368 19 6 8.6721 1.2497 -0.5584 20 6 9.4219 0.0890 -0.5942 21 6 10.6348 0.0699 -1.2571 22 6 11.1021 1.2141 -1.8763 23 6 10.3546 2.3763 -1.8359 24 6 9.1397 2.3940 -1.1769 25 6 4.6482 -0.1542 1.1953 26 9 5.3262 -0.3055 2.3539 27 6 3.2685 -0.1507 1.1998 28 1 2.7303 0.2705 -2.1286 29 1 9.4262 -0.9972 2.3297 30 1 9.0584 -0.8040 -0.1077 31 1 11.2186 -0.8381 -1.2889 32 1 12.0510 1.2000 -2.3919 33 1 10.7199 3.2703 -2.3193 34 1 8.5558 3.3021 -1.1450 35 1 2.7305 -0.2684 2.1288 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228077010.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:23 Heat of formation + Delta-G solvation = -42.114061 kcal Electronic energy + Delta-G solvation = -25671.849547 eV Core-core repulsion = 21657.661398 eV Total energy + Delta-G solvation = -4014.188149 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.92485 -49.67793 -40.61674 -39.80281 -38.48914 -37.16999 -34.94396 -32.49356 -31.52884 -31.38305 -30.94054 -28.74137 -25.50278 -24.40888 -23.97316 -22.99620 -21.92913 -20.50451 -19.29352 -18.57953 -17.82048 -17.68885 -17.40651 -16.90228 -16.75424 -16.67005 -16.15181 -15.96674 -15.73485 -15.19044 -15.00284 -14.92457 -14.58963 -14.54416 -14.45646 -13.98286 -13.62122 -13.57332 -13.29113 -13.23856 -13.08866 -12.83947 -12.64244 -12.56416 -12.19574 -11.99294 -11.60496 -11.26703 -10.74812 -10.33507 -9.86137 -9.66797 -9.40944 -9.17655 -7.94924 -6.34986 -0.60564 -0.07913 0.81478 0.99422 1.40311 1.44067 1.49355 1.49360 1.59035 2.39889 2.41618 2.52521 2.92290 3.07471 3.29291 3.35933 3.46579 3.81270 3.83333 4.25490 4.31708 4.38559 4.42766 4.57895 4.63299 4.80348 4.82553 4.91304 4.98018 5.06341 5.20226 5.44425 5.48037 5.61897 5.70792 5.87923 5.97401 6.12505 6.32450 6.33842 6.51012 6.62350 7.03145 7.42473 8.84898 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.013461 B = 0.005578 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.624022 B = 5018.924101 C = 6599.179713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.292 3.708 3 C 0.010 3.990 4 C -0.079 4.079 5 C 0.078 3.922 6 F -0.130 7.130 7 C 0.068 3.932 8 O -0.329 6.329 9 C 0.254 3.746 10 H 0.021 0.979 11 C -0.552 4.552 12 H 0.056 0.944 13 C 0.062 3.938 14 N -0.852 5.852 15 Si 0.933 3.067 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.272 1.272 19 C -0.069 4.069 20 C -0.066 4.066 21 C -0.160 4.160 22 C -0.138 4.138 23 C -0.144 4.144 24 C -0.139 4.139 25 C 0.092 3.908 26 F -0.125 7.125 27 C -0.087 4.087 28 H 0.183 0.817 29 H 0.263 0.737 30 H 0.138 0.862 31 H 0.120 0.880 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.116 0.884 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.940 0.866 -5.312 7.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.023 4.023 3 C 0.006 3.994 4 C -0.101 4.101 5 C 0.058 3.942 6 F -0.109 7.109 7 C 0.020 3.980 8 O -0.247 6.247 9 C 0.201 3.799 10 H 0.039 0.961 11 C -0.588 4.588 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.486 5.486 15 Si 0.759 3.241 16 H -0.200 1.200 17 H -0.209 1.209 18 H -0.196 1.196 19 C -0.069 4.069 20 C -0.085 4.085 21 C -0.178 4.178 22 C -0.156 4.156 23 C -0.161 4.161 24 C -0.157 4.157 25 C 0.071 3.929 26 F -0.103 7.103 27 C -0.108 4.108 28 H 0.201 0.799 29 H 0.073 0.927 30 H 0.155 0.845 31 H 0.138 0.862 32 H 0.155 0.845 33 H 0.158 0.842 34 H 0.134 0.866 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -6.387 0.570 -5.281 8.307 hybrid contribution 1.151 0.197 1.367 1.798 sum -5.236 0.767 -3.914 6.582 Atomic orbital electron populations 1.81304 1.12433 1.09806 1.07987 1.24998 0.91591 0.92742 0.92965 1.15027 0.84155 1.07246 0.92946 1.21150 0.90224 0.98840 0.99836 1.17645 0.90188 1.05410 0.80940 1.91515 1.80516 1.93210 1.45657 1.19546 0.87022 0.99982 0.91465 1.86280 1.11637 1.34408 1.92342 1.18902 0.87514 0.79579 0.93858 0.96075 1.21492 1.32870 1.10267 0.94149 0.92618 1.25412 0.93517 0.94452 1.01026 1.69975 1.30684 1.12474 1.35496 0.85946 0.77553 0.78552 0.81999 1.19983 1.20859 1.19633 1.19917 0.97540 0.94261 0.95227 1.21667 0.93754 1.00221 0.92866 1.21393 0.97338 0.98987 1.00116 1.21262 1.00383 0.93042 1.00950 1.21134 0.94795 0.98897 1.01317 1.21011 0.97905 0.97378 0.99382 1.17784 0.89979 1.03624 0.81464 1.91576 1.80499 1.92580 1.45643 1.21204 0.90431 0.99255 0.99960 0.79935 0.92718 0.84465 0.86214 0.84457 0.84236 0.86570 0.80768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -11.09 18.54 19.00 0.35 -10.73 16 2 C 0.29 6.25 15.33 88.33 1.35 7.60 16 3 C 0.01 0.21 5.74 -21.30 -0.12 0.09 16 4 C -0.08 -1.73 9.72 22.57 0.22 -1.51 16 5 C 0.08 2.41 7.30 22.40 0.16 2.58 16 6 F -0.13 -4.38 17.10 44.97 0.77 -3.61 16 7 C 0.07 2.60 5.56 22.67 0.13 2.72 16 8 O -0.33 -15.41 7.96 -91.96 -0.73 -16.14 16 9 C 0.25 12.06 2.65 29.10 0.08 12.13 16 10 H 0.02 0.97 7.82 -2.39 -0.02 0.95 16 11 C -0.55 -28.00 8.03 25.60 0.21 -27.80 16 12 H 0.06 2.84 7.81 -2.91 -0.02 2.82 16 13 C 0.06 3.15 5.24 84.66 0.44 3.60 16 14 N -0.85 -44.13 8.50 21.45 0.18 -43.95 16 15 Si 0.93 41.23 29.54 68.60 2.03 43.26 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 C -0.07 -3.19 4.80 -19.87 -0.10 -3.28 16 20 C -0.07 -3.06 7.46 22.27 0.17 -2.89 16 21 C -0.16 -6.31 10.05 22.27 0.22 -6.09 16 22 C -0.14 -4.76 10.05 22.27 0.22 -4.53 16 23 C -0.14 -4.97 10.05 22.27 0.22 -4.75 16 24 C -0.14 -5.59 9.68 22.26 0.22 -5.37 16 25 C 0.09 3.17 7.30 22.40 0.16 3.34 16 26 F -0.12 -5.20 16.24 44.97 0.73 -4.47 16 27 C -0.09 -2.12 9.72 22.57 0.22 -1.90 16 28 H 0.18 2.71 8.06 -2.91 -0.02 2.68 16 29 H 0.26 13.17 8.31 -92.71 -0.77 12.40 16 30 H 0.14 7.05 5.50 -2.91 -0.02 7.04 16 31 H 0.12 4.18 8.06 -2.91 -0.02 4.15 16 32 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 33 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 34 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 35 H 0.17 3.28 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -59.13 325.65 8.29 -50.84 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 1.15 Total: 10.89 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: 3.81 Total: -26.07 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.53 Total: -54.68 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.73 Total: -16.14 kcal Atomic # 9 Polarization: -9.59 SS G_CDS: 1.50 Total: -8.09 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -59.13 8.29 -50.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228077010.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.725 kcal (2) G-P(sol) polarization free energy of solvation -59.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds