Wall clock time and date at job start Tue Mar 31 2020 11:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39735 * 120.08007 * 270.77468 * 3 2 1 5 5 C 1.37961 * 119.91814 * 179.97438 * 4 3 2 6 6 F 1.35099 * 119.96120 * 179.72773 * 5 4 3 7 7 C 1.39067 * 120.08149 * 359.97438 * 5 4 3 8 8 O 1.35867 * 119.92085 * 179.97438 * 7 5 4 9 9 C 1.42893 * 117.00108 * 89.99802 * 8 7 5 10 10 H 1.09008 * 109.47051 * 30.00369 * 9 8 7 11 11 C 1.50697 * 109.47748 * 270.00625 * 9 8 7 12 12 H 1.08007 * 119.99337 * 324.85991 * 11 9 8 13 13 C 1.37873 * 120.00700 * 144.86138 * 11 9 8 14 14 N 1.31517 * 119.99692 * 5.14370 * 13 11 9 15 15 Si 1.86801 * 120.00207 * 185.13951 * 13 11 9 16 16 H 1.48506 * 109.46606 * 90.00379 * 15 13 11 17 17 H 1.48496 * 109.47036 * 209.99856 * 15 13 11 18 18 H 1.48496 * 109.47123 * 330.00424 * 15 13 11 19 19 C 1.50699 * 109.47303 * 149.99919 * 9 8 7 20 20 C 1.38233 * 119.99421 * 37.76071 * 19 9 8 21 21 C 1.38241 * 119.99876 * 179.80925 * 20 19 9 22 22 C 1.38234 * 119.99866 * 0.39734 * 21 20 19 23 23 C 1.38234 * 119.99909 * 359.85598 * 22 21 20 24 24 C 1.38227 * 120.00416 * 218.03303 * 19 9 8 25 25 C 1.39060 * 120.16219 * 0.02562 * 7 5 4 26 26 F 1.35096 * 119.95936 * 180.02562 * 25 7 5 27 27 C 1.37962 * 120.08369 * 359.97438 * 25 7 5 28 28 H 1.07999 * 120.04702 * 0.02562 * 4 3 2 29 29 H 0.97002 * 119.99509 * 179.97438 * 14 13 11 30 30 H 1.08005 * 120.00478 * 359.97438 * 20 19 9 31 31 H 1.08000 * 119.99839 * 180.22849 * 21 20 19 32 32 H 1.08002 * 120.00000 * 179.83190 * 22 21 20 33 33 H 1.08004 * 119.99995 * 179.97438 * 23 22 21 34 34 H 1.08004 * 120.00059 * 359.97438 * 24 19 9 35 35 H 1.07991 * 120.04548 * 180.02562 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2684 -0.0154 1.2091 5 6 4.6480 -0.0153 1.2051 6 9 5.3260 -0.0252 2.3736 7 6 5.3416 0.0003 -0.0001 8 8 6.7003 0.0009 -0.0001 9 6 7.3496 -1.2719 -0.0162 10 1 6.7219 -1.9935 -0.5392 11 6 7.5778 -1.7374 1.3988 12 1 7.8115 -1.0204 2.1720 13 6 7.4884 -3.0784 1.7064 14 7 7.3044 -3.9617 0.7494 15 14 7.6287 -3.6408 3.4822 16 1 6.2794 -3.6632 4.1023 17 1 8.2156 -5.0042 3.5247 18 1 8.5022 -2.7022 4.2311 19 6 8.6739 -1.1514 -0.7251 20 6 9.4457 -0.0166 -0.5595 21 6 10.6623 0.0924 -1.2067 22 6 11.1034 -0.9299 -2.0260 23 6 10.3291 -2.0624 -2.1958 24 6 9.1143 -2.1730 -1.5455 25 6 4.6480 0.0163 -1.2053 26 9 5.3260 0.0308 -2.3737 27 6 3.2684 0.0162 -1.2092 28 1 2.7304 -0.0287 2.1455 29 1 7.2419 -4.9052 0.9658 30 1 9.0994 0.7838 0.0777 31 1 11.2670 0.9775 -1.0744 32 1 12.0526 -0.8436 -2.5338 33 1 10.6735 -2.8610 -2.8362 34 1 8.5094 -3.0579 -1.6780 35 1 2.7304 0.0282 -2.1455 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228077023.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:26 Heat of formation + Delta-G solvation = -45.094431 kcal Electronic energy + Delta-G solvation = -25398.259267 eV Core-core repulsion = 21383.941879 eV Total energy + Delta-G solvation = -4014.317387 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.70225 -48.43400 -39.38463 -38.49420 -37.27263 -36.03369 -33.27853 -31.16602 -30.42058 -30.09379 -29.77848 -26.90646 -24.20333 -23.06231 -22.81478 -21.69755 -20.41070 -19.37044 -17.55351 -17.37882 -16.62414 -16.38626 -16.28031 -15.65530 -15.48778 -15.01319 -14.86138 -14.56013 -14.45253 -13.88282 -13.85067 -13.47228 -13.41714 -13.38109 -13.22475 -12.59794 -12.29997 -12.26412 -12.13923 -11.93178 -11.58463 -11.45600 -11.15621 -11.07245 -10.50621 -10.42631 -10.29791 -9.84630 -9.03249 -8.82246 -8.73607 -8.43230 -8.11644 -7.79219 -6.38170 -4.44436 0.51902 1.03947 2.19874 2.22013 2.52016 2.69708 3.16164 3.23135 3.27398 3.49663 3.62036 4.07443 4.17778 4.37666 4.57090 4.68860 4.84343 4.86556 4.99344 5.39119 5.57435 5.60869 5.69275 5.79510 5.92039 5.94533 6.10655 6.19451 6.34273 6.41823 6.62914 6.70600 6.84365 6.93231 7.24481 7.30554 7.34129 7.56622 7.58671 7.76555 7.87970 8.08726 8.74081 9.22069 10.66320 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.011886 B = 0.005583 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.138173 B = 5013.975621 C = 6479.723331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C 0.268 3.732 3 C -0.003 4.003 4 C -0.109 4.109 5 C 0.120 3.880 6 F -0.105 7.105 7 C 0.107 3.893 8 O -0.335 6.335 9 C 0.239 3.761 10 H 0.062 0.938 11 C -0.523 4.523 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.876 5.876 15 Si 0.900 3.100 16 H -0.275 1.275 17 H -0.284 1.284 18 H -0.269 1.269 19 C -0.030 4.030 20 C -0.108 4.108 21 C -0.132 4.132 22 C -0.147 4.147 23 C -0.129 4.129 24 C -0.102 4.102 25 C 0.095 3.905 26 F -0.119 7.119 27 C -0.108 4.108 28 H 0.150 0.850 29 H 0.270 0.730 30 H 0.117 0.883 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.126 0.874 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.237 5.836 -3.378 7.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.093 5.093 2 C -0.048 4.048 3 C -0.007 4.007 4 C -0.131 4.131 5 C 0.100 3.900 6 F -0.083 7.083 7 C 0.058 3.942 8 O -0.253 6.253 9 C 0.187 3.813 10 H 0.080 0.920 11 C -0.560 4.560 12 H 0.091 0.909 13 C -0.132 4.132 14 N -0.512 5.512 15 Si 0.727 3.273 16 H -0.201 1.201 17 H -0.209 1.209 18 H -0.193 1.193 19 C -0.031 4.031 20 C -0.127 4.127 21 C -0.151 4.151 22 C -0.165 4.165 23 C -0.147 4.147 24 C -0.120 4.120 25 C 0.075 3.925 26 F -0.097 7.097 27 C -0.130 4.130 28 H 0.167 0.833 29 H 0.079 0.921 30 H 0.135 0.865 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.144 0.856 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.812 5.762 -3.409 7.704 hybrid contribution 0.868 -0.743 0.992 1.513 sum -2.944 5.019 -2.417 6.301 Atomic orbital electron populations 1.81247 1.11803 1.09083 1.07202 1.25321 0.92160 0.93537 0.93743 1.15155 0.84422 1.08016 0.93110 1.21016 0.92056 1.01556 0.98479 1.17453 0.88841 1.01667 0.82058 1.91607 1.79756 1.93040 1.43883 1.18898 0.86869 0.98629 0.89803 1.86013 1.11086 1.34656 1.93506 1.19341 0.87475 0.78217 0.96307 0.91976 1.21418 1.48762 0.92879 0.92923 0.90922 1.24999 0.93599 0.96464 0.98168 1.69888 1.46694 1.02328 1.32295 0.86429 0.78787 0.78105 0.83974 1.20059 1.20942 1.19327 1.20090 0.97316 0.93065 0.92594 1.20924 0.94083 0.98120 0.99529 1.20973 0.96685 0.98607 0.98789 1.20871 0.99626 0.95060 1.00960 1.20974 0.95354 0.97646 1.00767 1.20994 0.96371 0.98864 0.95763 1.17514 0.89209 1.04361 0.81428 1.91549 1.79969 1.93646 1.44573 1.20912 0.91790 1.01838 0.98435 0.83252 0.92051 0.86514 0.87338 0.87494 0.87210 0.85643 0.83298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.94 18.54 41.84 0.78 -5.17 16 2 C 0.27 3.35 15.33 -22.47 -0.34 3.01 16 3 C 0.00 -0.04 5.74 -106.85 -0.61 -0.65 16 4 C -0.11 -1.43 9.72 -39.12 -0.38 -1.81 16 5 C 0.12 2.01 7.30 -39.38 -0.29 1.73 16 6 F -0.10 -1.98 16.22 2.25 0.04 -1.94 16 7 C 0.11 1.95 5.56 -38.97 -0.22 1.73 16 8 O -0.33 -7.14 8.64 -19.32 -0.17 -7.30 16 9 C 0.24 5.54 2.46 -29.04 -0.07 5.47 16 10 H 0.06 1.56 7.02 -51.92 -0.36 1.19 16 11 C -0.52 -13.10 7.75 -34.44 -0.27 -13.36 16 12 H 0.07 1.87 7.82 -52.48 -0.41 1.46 16 13 C 0.07 1.84 5.45 -17.82 -0.10 1.74 16 14 N -0.88 -22.53 12.84 55.43 0.71 -21.82 16 15 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 16 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 C -0.03 -0.66 4.97 -104.63 -0.52 -1.18 16 20 C -0.11 -2.19 9.36 -39.58 -0.37 -2.56 16 21 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 22 C -0.15 -2.49 10.05 -39.58 -0.40 -2.88 16 23 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 24 C -0.10 -2.14 9.67 -39.59 -0.38 -2.52 16 25 C 0.10 1.50 7.30 -39.38 -0.29 1.21 16 26 F -0.12 -2.01 17.10 2.25 0.04 -1.97 16 27 C -0.11 -1.34 9.72 -39.12 -0.38 -1.72 16 28 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 30 H 0.12 2.31 7.71 -52.48 -0.40 1.91 16 31 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 34 H 0.13 2.74 8.05 -52.48 -0.42 2.32 16 35 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 333.86 15.07 5.03 5.03 Total: -1.00 -26.83 333.86 -6.86 -33.69 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -2.85 Total: 1.77 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -5.41 Total: -17.28 kcal Atomic # 7 Polarization: -28.47 SS G_CDS: 1.49 Total: -26.98 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.17 Total: -7.30 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.08 Total: -3.91 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -26.83 -6.86 -33.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228077023.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.409 kcal (2) G-P(sol) polarization free energy of solvation -26.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds