Wall clock time and date at job start Tue Mar 31 2020 11:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39735 * 120.08007 * 270.77468 * 3 2 1 5 5 C 1.37961 * 119.91814 * 179.97438 * 4 3 2 6 6 F 1.35099 * 119.96120 * 179.72773 * 5 4 3 7 7 C 1.39067 * 120.08149 * 359.97438 * 5 4 3 8 8 O 1.35867 * 119.92085 * 179.97438 * 7 5 4 9 9 C 1.42893 * 117.00108 * 89.99802 * 8 7 5 10 10 H 1.09008 * 109.47051 * 30.00369 * 9 8 7 11 11 C 1.50697 * 109.47748 * 270.00625 * 9 8 7 12 12 H 1.08007 * 119.99337 * 324.85991 * 11 9 8 13 13 C 1.37873 * 120.00700 * 144.86138 * 11 9 8 14 14 N 1.31517 * 119.99692 * 5.14370 * 13 11 9 15 15 Si 1.86801 * 120.00207 * 185.13951 * 13 11 9 16 16 H 1.48506 * 109.46606 * 90.00379 * 15 13 11 17 17 H 1.48496 * 109.47036 * 209.99856 * 15 13 11 18 18 H 1.48496 * 109.47123 * 330.00424 * 15 13 11 19 19 C 1.50699 * 109.47303 * 149.99919 * 9 8 7 20 20 C 1.38233 * 119.99421 * 37.76071 * 19 9 8 21 21 C 1.38241 * 119.99876 * 179.80925 * 20 19 9 22 22 C 1.38234 * 119.99866 * 0.39734 * 21 20 19 23 23 C 1.38234 * 119.99909 * 359.85598 * 22 21 20 24 24 C 1.38227 * 120.00416 * 218.03303 * 19 9 8 25 25 C 1.39060 * 120.16219 * 0.02562 * 7 5 4 26 26 F 1.35096 * 119.95936 * 180.02562 * 25 7 5 27 27 C 1.37962 * 120.08369 * 359.97438 * 25 7 5 28 28 H 1.07999 * 120.04702 * 0.02562 * 4 3 2 29 29 H 0.97002 * 119.99509 * 179.97438 * 14 13 11 30 30 H 1.08005 * 120.00478 * 359.97438 * 20 19 9 31 31 H 1.08000 * 119.99839 * 180.22849 * 21 20 19 32 32 H 1.08002 * 120.00000 * 179.83190 * 22 21 20 33 33 H 1.08004 * 119.99995 * 179.97438 * 23 22 21 34 34 H 1.08004 * 120.00059 * 359.97438 * 24 19 9 35 35 H 1.07991 * 120.04548 * 180.02562 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2684 -0.0154 1.2091 5 6 4.6480 -0.0153 1.2051 6 9 5.3260 -0.0252 2.3736 7 6 5.3416 0.0003 -0.0001 8 8 6.7003 0.0009 -0.0001 9 6 7.3496 -1.2719 -0.0162 10 1 6.7219 -1.9935 -0.5392 11 6 7.5778 -1.7374 1.3988 12 1 7.8115 -1.0204 2.1720 13 6 7.4884 -3.0784 1.7064 14 7 7.3044 -3.9617 0.7494 15 14 7.6287 -3.6408 3.4822 16 1 6.2794 -3.6632 4.1023 17 1 8.2156 -5.0042 3.5247 18 1 8.5022 -2.7022 4.2311 19 6 8.6739 -1.1514 -0.7251 20 6 9.4457 -0.0166 -0.5595 21 6 10.6623 0.0924 -1.2067 22 6 11.1034 -0.9299 -2.0260 23 6 10.3291 -2.0624 -2.1958 24 6 9.1143 -2.1730 -1.5455 25 6 4.6480 0.0163 -1.2053 26 9 5.3260 0.0308 -2.3737 27 6 3.2684 0.0162 -1.2092 28 1 2.7304 -0.0287 2.1455 29 1 7.2419 -4.9052 0.9658 30 1 9.0994 0.7838 0.0777 31 1 11.2670 0.9775 -1.0744 32 1 12.0526 -0.8436 -2.5338 33 1 10.6735 -2.8610 -2.8362 34 1 8.5094 -3.0579 -1.6780 35 1 2.7304 0.0282 -2.1455 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228077023.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:26 Heat of formation + Delta-G solvation = -56.610914 kcal Electronic energy + Delta-G solvation = -25398.758659 eV Core-core repulsion = 21383.941879 eV Total energy + Delta-G solvation = -4014.816780 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.00719 -49.82252 -40.74989 -39.91152 -38.66603 -37.23294 -35.07783 -32.72590 -31.61165 -31.57046 -31.11528 -28.65485 -25.69862 -24.51766 -24.08608 -23.17826 -21.95814 -20.59640 -19.10467 -18.82666 -18.26161 -17.83793 -17.48718 -17.06569 -16.79593 -16.57640 -16.23982 -16.03544 -15.91958 -15.35805 -15.12507 -14.96764 -14.72811 -14.60412 -14.52050 -14.05216 -13.86845 -13.62531 -13.38889 -13.32870 -13.10227 -12.99270 -12.80083 -12.58657 -12.15574 -12.05393 -11.83623 -11.52946 -10.72195 -10.66994 -9.92643 -9.78425 -9.60737 -9.34618 -8.26254 -6.39201 -0.69329 -0.14769 0.71394 0.71912 1.37537 1.39925 1.45456 1.48101 1.52356 2.30771 2.35808 2.48675 2.83629 2.94319 3.08417 3.20944 3.37599 3.72534 3.77372 4.16842 4.23432 4.30028 4.35082 4.45661 4.61812 4.72186 4.79447 4.84407 4.88076 4.94963 5.00498 5.32696 5.34701 5.42522 5.62660 5.77404 5.81043 5.94130 6.06482 6.28655 6.34612 6.42354 6.88526 7.30652 8.77184 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.011886 B = 0.005583 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.138173 B = 5013.975621 C = 6479.723331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C 0.291 3.709 3 C 0.017 3.983 4 C -0.088 4.088 5 C 0.099 3.901 6 F -0.124 7.124 7 C 0.067 3.933 8 O -0.348 6.348 9 C 0.252 3.748 10 H 0.031 0.969 11 C -0.532 4.532 12 H 0.056 0.944 13 C 0.035 3.965 14 N -0.901 5.901 15 Si 0.948 3.052 16 H -0.269 1.269 17 H -0.280 1.280 18 H -0.271 1.271 19 C -0.060 4.060 20 C -0.125 4.125 21 C -0.127 4.127 22 C -0.137 4.137 23 C -0.128 4.128 24 C -0.124 4.124 25 C 0.086 3.914 26 F -0.129 7.129 27 C -0.082 4.082 28 H 0.180 0.820 29 H 0.269 0.731 30 H 0.110 0.890 31 H 0.144 0.856 32 H 0.150 0.850 33 H 0.138 0.862 34 H 0.104 0.896 35 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.391 6.498 -3.992 7.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C -0.024 4.024 3 C 0.013 3.987 4 C -0.109 4.109 5 C 0.079 3.921 6 F -0.102 7.102 7 C 0.019 3.981 8 O -0.266 6.266 9 C 0.199 3.801 10 H 0.049 0.951 11 C -0.569 4.569 12 H 0.074 0.926 13 C -0.168 4.168 14 N -0.538 5.538 15 Si 0.773 3.227 16 H -0.194 1.194 17 H -0.205 1.205 18 H -0.196 1.196 19 C -0.061 4.061 20 C -0.144 4.144 21 C -0.145 4.145 22 C -0.155 4.155 23 C -0.146 4.146 24 C -0.143 4.143 25 C 0.065 3.935 26 F -0.107 7.107 27 C -0.103 4.103 28 H 0.197 0.803 29 H 0.079 0.921 30 H 0.128 0.872 31 H 0.161 0.839 32 H 0.168 0.832 33 H 0.156 0.844 34 H 0.122 0.878 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -3.983 6.440 -4.025 8.575 hybrid contribution 0.824 -0.844 1.091 1.607 sum -3.159 5.596 -2.934 7.064 Atomic orbital electron populations 1.81304 1.12358 1.09561 1.07835 1.24950 0.91541 0.92865 0.93079 1.15069 0.84307 1.06586 0.92730 1.21236 0.90405 0.99103 1.00174 1.17687 0.90109 1.03292 0.81024 1.91551 1.80443 1.93451 1.44739 1.19348 0.85919 1.01240 0.91550 1.85941 1.13164 1.33695 1.93831 1.18986 0.87816 0.78236 0.95074 0.95121 1.21457 1.49035 0.92787 0.93630 0.92609 1.25580 0.93614 0.96528 1.01040 1.69984 1.48090 1.02318 1.33438 0.85692 0.78862 0.77607 0.80510 1.19400 1.20515 1.19565 1.20160 0.97315 0.94508 0.94103 1.20992 0.95414 0.97471 1.00476 1.21370 0.95587 1.00024 0.97483 1.21348 1.00649 0.93672 0.99818 1.21317 0.94085 0.99057 1.00139 1.20981 0.97899 0.98163 0.97249 1.17626 0.90296 1.05200 0.80329 1.91519 1.80480 1.93848 1.44895 1.21190 0.90184 0.98853 1.00063 0.80286 0.92125 0.87228 0.83864 0.83216 0.84397 0.87817 0.79722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -11.14 18.54 19.00 0.35 -10.78 16 2 C 0.29 6.36 15.33 88.33 1.35 7.71 16 3 C 0.02 0.37 5.74 -21.31 -0.12 0.25 16 4 C -0.09 -2.15 9.72 22.57 0.22 -1.93 16 5 C 0.10 3.37 7.30 22.40 0.16 3.54 16 6 F -0.12 -4.84 16.22 44.97 0.73 -4.11 16 7 C 0.07 2.55 5.56 22.67 0.13 2.67 16 8 O -0.35 -15.79 8.64 -92.06 -0.80 -16.59 16 9 C 0.25 12.43 2.46 29.10 0.07 12.51 16 10 H 0.03 1.67 7.02 -2.38 -0.02 1.65 16 11 C -0.53 -28.05 7.75 25.60 0.20 -27.85 16 12 H 0.06 3.05 7.82 -2.91 -0.02 3.02 16 13 C 0.03 1.81 5.45 84.65 0.46 2.28 16 14 N -0.90 -48.33 12.84 21.45 0.28 -48.05 16 15 Si 0.95 41.94 29.54 68.60 2.03 43.97 16 16 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 17 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 C -0.06 -2.79 4.97 -19.87 -0.10 -2.89 16 20 C -0.13 -5.16 9.36 22.27 0.21 -4.95 16 21 C -0.13 -4.21 10.05 22.27 0.22 -3.99 16 22 C -0.14 -4.23 10.05 22.27 0.22 -4.00 16 23 C -0.13 -4.48 10.05 22.27 0.22 -4.25 16 24 C -0.12 -5.42 9.67 22.27 0.22 -5.20 16 25 C 0.09 2.71 7.30 22.40 0.16 2.87 16 26 F -0.13 -4.44 17.10 44.97 0.77 -3.68 16 27 C -0.08 -1.85 9.72 22.57 0.22 -1.63 16 28 H 0.18 3.30 8.06 -2.91 -0.02 3.28 16 29 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 30 H 0.11 4.53 7.71 -2.91 -0.02 4.51 16 31 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 32 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 33 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 34 H 0.10 4.85 8.05 -2.91 -0.02 4.83 16 35 H 0.19 2.89 8.06 -2.92 -0.02 2.87 16 Total: -1.00 -61.80 333.86 8.36 -53.45 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 1.15 Total: 10.68 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: 3.85 Total: -24.88 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 0.63 Total: -58.84 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.80 Total: -16.59 kcal Atomic # 9 Polarization: -9.28 SS G_CDS: 1.50 Total: -7.78 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -61.80 8.36 -53.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228077023.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.163 kcal (2) G-P(sol) polarization free energy of solvation -61.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds