Wall clock time and date at job start Tue Mar 31 2020 11:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.40051 * 120.13463 * 327.36557 * 3 2 1 5 5 F 1.35100 * 120.06749 * 359.97438 * 4 3 2 6 6 C 1.37982 * 119.85997 * 180.02562 * 4 3 2 7 7 C 1.38916 * 120.13941 * 359.97438 * 6 4 3 8 8 O 1.35749 * 119.86558 * 179.97438 * 7 6 4 9 9 C 1.42899 * 117.00169 * 1.08778 * 8 7 6 10 10 H 1.08998 * 109.47354 * 323.32305 * 9 8 7 11 11 C 1.50701 * 109.46737 * 83.32118 * 9 8 7 12 12 H 1.08003 * 120.00381 * 54.58648 * 11 9 8 13 13 C 1.37880 * 120.00185 * 234.58414 * 11 9 8 14 14 N 1.31510 * 120.00093 * 168.06584 * 13 11 9 15 15 Si 1.86803 * 119.99721 * 348.06423 * 13 11 9 16 16 H 1.48501 * 109.46868 * 93.15453 * 15 13 11 17 17 H 1.48498 * 109.47242 * 213.15136 * 15 13 11 18 18 H 1.48496 * 109.47347 * 333.15528 * 15 13 11 19 19 C 1.50703 * 109.47232 * 203.32034 * 9 8 7 20 20 C 1.38235 * 120.00008 * 321.99817 * 19 9 8 21 21 C 1.38234 * 119.99729 * 180.02562 * 20 19 9 22 22 C 1.38231 * 120.00108 * 0.07245 * 21 20 19 23 23 C 1.38237 * 120.00229 * 359.97438 * 22 21 20 24 24 C 1.38231 * 119.99504 * 142.13397 * 19 9 8 25 25 C 1.38917 * 120.26856 * 0.27776 * 7 6 4 26 26 C 1.37983 * 120.13408 * 359.44323 * 25 7 6 27 27 F 1.35100 * 120.07062 * 180.25747 * 26 25 7 28 28 H 1.08005 * 119.92784 * 179.97438 * 6 4 3 29 29 H 0.97006 * 119.99917 * 179.97438 * 14 13 11 30 30 H 1.08003 * 119.99995 * 0.10536 * 20 19 9 31 31 H 1.07995 * 119.99887 * 180.34375 * 21 20 19 32 32 H 1.07998 * 119.99976 * 179.97438 * 22 21 20 33 33 H 1.07998 * 120.00327 * 179.97438 * 23 22 21 34 34 H 1.07999 * 120.00645 * 359.97193 * 24 19 9 35 35 H 1.08001 * 119.93162 * 179.70799 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2716 -1.0191 0.6532 5 9 2.6006 -2.0064 1.2859 6 6 4.6514 -1.0126 0.6501 7 6 5.3427 0.0022 0.0004 8 8 6.7001 0.0034 0.0013 9 6 7.3494 -1.0808 0.6683 10 1 6.7798 -1.3545 1.5563 11 6 7.4319 -2.2647 -0.2604 12 1 7.8852 -2.1564 -1.2346 13 6 6.9286 -3.4864 0.1337 14 7 6.7842 -4.4530 -0.7463 15 14 6.4519 -3.7686 1.9177 16 1 5.0082 -3.4706 2.0973 17 1 6.7141 -5.1841 2.2822 18 1 7.2541 -2.8756 2.7917 19 6 8.7394 -0.6617 1.0726 20 6 9.4905 0.1411 0.2346 21 6 10.7657 0.5250 0.6053 22 6 11.2903 0.1049 1.8132 23 6 10.5396 -0.6987 2.6508 24 6 9.2643 -1.0825 2.2802 25 6 4.6504 1.0193 -0.6448 26 6 3.2706 1.0207 -0.6536 27 9 2.5987 2.0076 -1.2859 28 1 5.1950 -1.7982 1.1538 29 1 6.4305 -5.3126 -0.4690 30 1 9.0806 0.4694 -0.7091 31 1 11.3504 1.1567 -0.0468 32 1 12.2867 0.4045 2.1026 33 1 10.9496 -1.0272 3.5944 34 1 8.6781 -1.7111 2.9342 35 1 5.1934 1.8081 -1.1442 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228224653.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:28 Heat of formation + Delta-G solvation = -50.952961 kcal Electronic energy + Delta-G solvation = -25130.503828 eV Core-core repulsion = 21115.932396 eV Total energy + Delta-G solvation = -4014.571432 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.39878 -50.30332 -41.41006 -39.89853 -38.63270 -37.35487 -35.14898 -33.18859 -31.77269 -31.70566 -31.43466 -29.20331 -25.70092 -24.55651 -24.12433 -23.32750 -21.87548 -20.63280 -19.64193 -19.45405 -18.85550 -17.83818 -17.64928 -17.45659 -16.91035 -16.61193 -16.60496 -16.17435 -15.87775 -15.65593 -15.40191 -14.98870 -14.85327 -14.83295 -14.78111 -14.47532 -14.19985 -14.11442 -13.60411 -13.41650 -13.38058 -13.10134 -12.68594 -12.51134 -12.42376 -12.01841 -11.81085 -11.59177 -11.28309 -10.86593 -10.09902 -9.67756 -9.58690 -9.39322 -8.51060 -6.58939 -0.60300 -0.25398 0.58192 0.65401 1.18494 1.23518 1.30156 1.33047 1.60731 1.94478 2.12069 2.35308 2.50250 2.51898 2.91412 3.08259 3.10085 3.58947 3.67767 3.91680 4.01886 4.21991 4.29195 4.35194 4.42978 4.44114 4.46554 4.69847 4.82397 4.86481 5.00766 5.13508 5.23687 5.27634 5.33385 5.70635 5.74452 5.84877 5.97519 6.16967 6.24956 6.32090 6.57633 7.07910 8.63488 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.014285 B = 0.004984 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.572156 B = 5616.655399 C = 6812.075311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C 0.278 3.722 3 C -0.156 4.156 4 C 0.214 3.786 5 F -0.127 7.127 6 C -0.269 4.269 7 C 0.246 3.754 8 O -0.299 6.299 9 C 0.212 3.788 10 H 0.054 0.946 11 C -0.536 4.536 12 H 0.048 0.952 13 C 0.048 3.952 14 N -0.908 5.908 15 Si 0.879 3.121 16 H -0.251 1.251 17 H -0.277 1.277 18 H -0.219 1.219 19 C -0.070 4.070 20 C -0.118 4.118 21 C -0.122 4.122 22 C -0.132 4.132 23 C -0.121 4.121 24 C -0.144 4.144 25 C -0.191 4.191 26 C 0.229 3.771 27 F -0.110 7.110 28 H 0.140 0.860 29 H 0.274 0.726 30 H 0.117 0.883 31 H 0.145 0.855 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.117 0.883 35 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.816 10.913 5.788 12.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.113 5.113 2 C -0.036 4.036 3 C -0.162 4.162 4 C 0.192 3.808 5 F -0.105 7.105 6 C -0.289 4.289 7 C 0.195 3.805 8 O -0.210 6.210 9 C 0.158 3.842 10 H 0.071 0.929 11 C -0.573 4.573 12 H 0.066 0.934 13 C -0.155 4.155 14 N -0.545 5.545 15 Si 0.701 3.299 16 H -0.176 1.176 17 H -0.203 1.203 18 H -0.141 1.141 19 C -0.070 4.070 20 C -0.136 4.136 21 C -0.140 4.140 22 C -0.149 4.149 23 C -0.139 4.139 24 C -0.162 4.162 25 C -0.211 4.211 26 C 0.207 3.793 27 F -0.088 7.088 28 H 0.158 0.842 29 H 0.084 0.916 30 H 0.136 0.864 31 H 0.162 0.838 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.135 0.865 35 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 2.124 10.856 5.669 12.430 hybrid contribution -0.291 -1.406 0.412 1.494 sum 1.833 9.451 6.081 11.387 Atomic orbital electron populations 1.81186 1.12137 1.08194 1.09762 1.25003 0.91924 0.93516 0.93169 1.15540 0.84890 1.01537 1.14242 1.16838 0.88681 0.84132 0.91186 1.91538 1.80401 1.59419 1.79115 1.21445 0.92755 1.04307 1.10397 1.18633 0.84159 0.90182 0.87517 1.86108 1.14293 1.48910 1.71675 1.19408 0.88572 0.83980 0.92192 0.92873 1.21158 1.40304 0.93501 1.02359 0.93360 1.25689 0.93507 0.95721 1.00621 1.69996 1.43366 1.05260 1.35855 0.86921 0.80857 0.79910 0.82165 1.17601 1.20306 1.14149 1.19863 0.95657 0.96906 0.94577 1.21058 0.95104 0.98097 0.99368 1.21434 0.94819 1.00249 0.97509 1.21444 1.00812 0.98361 0.94322 1.21353 0.93434 0.98245 1.00835 1.21198 0.97711 1.01310 0.96029 1.20354 0.90699 1.02682 1.07324 1.16484 0.88630 0.83713 0.90496 1.91588 1.80140 1.58386 1.78698 0.84217 0.91624 0.86448 0.83751 0.83156 0.83652 0.86467 0.79370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -14.92 18.54 19.00 0.35 -14.56 16 2 C 0.28 8.82 14.62 88.33 1.29 10.11 16 3 C -0.16 -4.65 5.76 -21.15 -0.12 -4.78 16 4 C 0.21 7.15 7.27 22.65 0.16 7.32 16 5 F -0.13 -4.46 16.81 44.97 0.76 -3.71 16 6 C -0.27 -9.72 8.73 22.37 0.20 -9.53 16 7 C 0.25 8.22 6.57 22.60 0.15 8.37 16 8 O -0.30 -11.13 9.04 -90.74 -0.82 -11.95 16 9 C 0.21 8.68 1.84 29.10 0.05 8.73 16 10 H 0.05 2.12 3.49 -2.39 -0.01 2.11 16 11 C -0.54 -26.83 8.67 25.60 0.22 -26.61 16 12 H 0.05 2.76 8.06 -2.91 -0.02 2.74 16 13 C 0.05 2.46 5.28 84.66 0.45 2.91 16 14 N -0.91 -50.89 13.96 21.45 0.30 -50.59 16 15 Si 0.88 36.71 24.83 68.60 1.70 38.41 16 16 H -0.25 -10.10 6.57 99.48 0.65 -9.45 16 17 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 18 H -0.22 -7.95 4.68 99.48 0.47 -7.48 16 19 C -0.07 -2.59 4.97 -19.87 -0.10 -2.69 16 20 C -0.12 -3.94 9.36 22.27 0.21 -3.74 16 21 C -0.12 -3.23 10.05 22.27 0.22 -3.01 16 22 C -0.13 -3.14 10.05 22.27 0.22 -2.91 16 23 C -0.12 -3.19 10.05 22.27 0.22 -2.97 16 24 C -0.14 -4.80 9.67 22.27 0.22 -4.59 16 25 C -0.19 -4.98 9.94 22.37 0.22 -4.75 16 26 C 0.23 5.97 7.27 22.65 0.16 6.14 16 27 F -0.11 -2.69 16.81 44.97 0.76 -1.93 16 28 H 0.14 5.57 1.94 -2.91 -0.01 5.57 16 29 H 0.27 14.44 8.31 -92.70 -0.77 13.67 16 30 H 0.12 3.93 7.72 -2.91 -0.02 3.91 16 31 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 32 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 33 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 34 H 0.12 3.83 5.96 -2.91 -0.02 3.81 16 35 H 0.19 3.76 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -58.26 316.14 7.72 -50.54 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.89 Total: 15.78 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: 3.78 Total: -21.99 kcal Atomic # 7 Polarization: -65.80 SS G_CDS: 0.65 Total: -65.15 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: -0.82 Total: -11.95 kcal Atomic # 9 Polarization: -7.15 SS G_CDS: 1.51 Total: -5.64 kcal Atomic # 14 Polarization: 36.71 SS G_CDS: 1.70 Total: 38.41 kcal Total: -58.26 7.72 -50.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228224653.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.414 kcal (2) G-P(sol) polarization free energy of solvation -58.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds