Wall clock time and date at job start Tue Mar 31 2020 11:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.40042 * 120.13445 * 302.32107 * 3 2 1 5 5 F 1.35098 * 120.06993 * 0.02562 * 4 3 2 6 6 C 1.37992 * 119.86276 * 179.97438 * 4 3 2 7 7 C 1.38917 * 120.13528 * 359.97438 * 6 4 3 8 8 O 1.35748 * 119.86224 * 180.02562 * 7 6 4 9 9 C 1.42904 * 116.99679 * 185.76827 * 8 7 6 10 10 H 1.08998 * 109.47122 * 33.28690 * 9 8 7 11 11 C 1.50701 * 109.46875 * 273.28466 * 9 8 7 12 12 H 1.07994 * 120.00159 * 330.17284 * 11 9 8 13 13 C 1.37875 * 119.99713 * 150.16806 * 11 9 8 14 14 N 1.31515 * 119.99861 * 179.60827 * 13 11 9 15 15 Si 1.86800 * 120.00256 * 359.61208 * 13 11 9 16 16 H 1.48500 * 109.46991 * 86.78523 * 15 13 11 17 17 H 1.48496 * 109.47269 * 206.78460 * 15 13 11 18 18 H 1.48498 * 109.47048 * 326.78747 * 15 13 11 19 19 C 1.50704 * 109.47097 * 153.28671 * 9 8 7 20 20 C 1.38235 * 119.99820 * 38.29060 * 19 9 8 21 21 C 1.38237 * 119.99771 * 179.80560 * 20 19 9 22 22 C 1.38235 * 119.99954 * 0.40656 * 21 20 19 23 23 C 1.38233 * 119.99988 * 359.84671 * 22 21 20 24 24 C 1.38235 * 119.99768 * 218.56192 * 19 9 8 25 25 C 1.38920 * 120.26870 * 0.28063 * 7 6 4 26 26 C 1.37983 * 120.13262 * 359.48205 * 25 7 6 27 27 F 1.35105 * 120.06406 * 180.25755 * 26 25 7 28 28 H 1.08002 * 119.92797 * 179.97438 * 6 4 3 29 29 H 0.97002 * 120.00441 * 179.97438 * 14 13 11 30 30 H 1.08003 * 120.00004 * 359.97438 * 20 19 9 31 31 H 1.07995 * 119.99995 * 180.22704 * 21 20 19 32 32 H 1.07997 * 120.00003 * 179.83456 * 22 21 20 33 33 H 1.07999 * 120.00062 * 179.97438 * 23 22 21 34 34 H 1.07999 * 120.00280 * 359.97438 * 24 19 9 35 35 H 1.07999 * 119.92497 * 179.72421 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2714 -0.6466 1.0235 5 9 2.6003 -1.2742 2.0140 6 6 4.6513 -0.6429 1.0177 7 6 5.3427 0.0006 -0.0009 8 8 6.7002 0.0003 -0.0015 9 6 7.3487 0.7852 -1.0042 10 1 6.7483 1.6694 -1.2182 11 6 7.5035 -0.0330 -2.2603 12 1 7.6117 -1.1056 -2.1962 13 6 7.5068 0.5879 -3.4914 14 7 7.6496 -0.1252 -4.5871 15 14 7.3085 2.4420 -3.6029 16 1 8.6381 3.0907 -3.4732 17 1 6.7100 2.7978 -4.9145 18 1 6.4200 2.9115 -2.5096 19 6 8.7079 1.2085 -0.5098 20 6 9.4755 0.3334 0.2358 21 6 10.7239 0.7203 0.6860 22 6 11.2012 1.9852 0.3976 23 6 10.4314 2.8621 -0.3435 24 6 9.1846 2.4738 -0.7971 25 6 4.6506 0.6489 -1.0161 26 6 3.2708 0.6480 -1.0239 27 9 2.5991 1.2745 -2.0147 28 1 5.1948 -1.1414 1.8067 29 1 7.6516 0.3115 -5.4533 30 1 9.1009 -0.6534 0.4644 31 1 11.3252 0.0354 1.2654 32 1 12.1755 2.2884 0.7516 33 1 10.8041 3.8504 -0.5685 34 1 8.5832 3.1589 -1.3763 35 1 5.1938 1.1512 -1.8029 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228224654.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:30 Heat of formation + Delta-G solvation = -39.708739 kcal Electronic energy + Delta-G solvation = -25021.350489 eV Core-core repulsion = 21007.266643 eV Total energy + Delta-G solvation = -4014.083846 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.17545 -49.04907 -40.06930 -38.67927 -37.33002 -36.03169 -33.40954 -31.66997 -30.52357 -30.47764 -30.16167 -27.62258 -24.22215 -23.19484 -22.77546 -22.13290 -20.60079 -19.28941 -18.27670 -17.64510 -17.59750 -16.51187 -16.31228 -16.19077 -15.71709 -15.37838 -15.12771 -14.91440 -14.54312 -14.27058 -14.03796 -13.61935 -13.52947 -13.46980 -13.15578 -13.12006 -12.85256 -12.81744 -12.32867 -12.11478 -12.00542 -11.57316 -11.31660 -11.13525 -11.06277 -10.62717 -10.24871 -10.05495 -9.77945 -9.07790 -8.85439 -8.45998 -8.30252 -8.07197 -6.54818 -4.61506 0.65984 0.98442 1.81488 1.87092 2.62275 2.89696 2.90396 2.97130 3.06953 3.25667 3.61341 3.80024 3.81793 3.94506 4.27932 4.36857 4.76056 4.86304 4.98466 5.15252 5.30511 5.33748 5.48658 5.58971 5.64609 5.73505 5.83569 5.93725 6.05739 6.08023 6.25190 6.41457 6.48742 6.58072 6.89004 6.92718 6.94214 7.11372 7.45905 7.46788 7.58202 8.00998 8.54726 8.99727 10.56148 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.014353 B = 0.004814 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.378480 B = 5814.913473 C = 7017.264419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C 0.267 3.733 3 C -0.162 4.162 4 C 0.211 3.789 5 F -0.120 7.120 6 C -0.214 4.214 7 C 0.255 3.745 8 O -0.290 6.290 9 C 0.202 3.798 10 H 0.057 0.943 11 C -0.539 4.539 12 H 0.093 0.907 13 C 0.090 3.910 14 N -0.866 5.866 15 Si 0.848 3.152 16 H -0.258 1.258 17 H -0.277 1.277 18 H -0.257 1.257 19 C -0.044 4.044 20 C -0.097 4.097 21 C -0.123 4.123 22 C -0.140 4.140 23 C -0.119 4.119 24 C -0.129 4.129 25 C -0.245 4.245 26 C 0.216 3.784 27 F -0.119 7.119 28 H 0.158 0.842 29 H 0.274 0.726 30 H 0.124 0.876 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.088 3.380 9.534 10.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.093 5.093 2 C -0.048 4.048 3 C -0.168 4.168 4 C 0.189 3.811 5 F -0.098 7.098 6 C -0.233 4.233 7 C 0.204 3.796 8 O -0.200 6.200 9 C 0.148 3.852 10 H 0.074 0.926 11 C -0.575 4.575 12 H 0.111 0.889 13 C -0.117 4.117 14 N -0.500 5.500 15 Si 0.674 3.326 16 H -0.183 1.183 17 H -0.203 1.203 18 H -0.183 1.183 19 C -0.045 4.045 20 C -0.115 4.115 21 C -0.141 4.141 22 C -0.158 4.158 23 C -0.137 4.137 24 C -0.147 4.147 25 C -0.265 4.265 26 C 0.194 3.806 27 F -0.097 7.097 28 H 0.176 0.824 29 H 0.084 0.916 30 H 0.142 0.858 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.129 0.871 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.532 3.278 9.410 9.979 hybrid contribution 0.268 1.026 -0.706 1.274 sum -0.264 4.304 8.704 9.714 Atomic orbital electron populations 1.81183 1.11599 1.09079 1.07481 1.24974 0.91925 0.93752 0.94134 1.15598 0.85369 1.14516 1.01300 1.16629 0.88769 0.91517 0.84158 1.91553 1.80348 1.79246 1.58680 1.20167 0.90928 1.09331 1.02915 1.18441 0.84427 0.87333 0.89408 1.86036 1.13616 1.65832 1.54497 1.19844 0.87434 0.91787 0.86161 0.92606 1.21147 1.52806 0.96266 0.87312 0.88881 1.24878 0.93483 0.97881 0.95444 1.69824 1.45865 1.36092 0.98225 0.87407 0.80060 0.86399 0.78703 1.18293 1.20280 1.18271 1.20059 0.97229 0.92645 0.94559 1.20916 0.93739 0.99582 0.97275 1.21085 0.96099 0.96242 1.00649 1.20955 0.99591 0.94570 1.00663 1.20933 0.94560 0.99385 0.98868 1.20896 0.96981 0.95779 1.01090 1.21516 0.92100 1.09000 1.03875 1.16887 0.89028 0.90895 0.83821 1.91563 1.80341 1.79136 1.58705 0.82423 0.91570 0.85766 0.86643 0.86862 0.86725 0.87116 0.81594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.11 18.54 41.84 0.78 -6.33 16 2 C 0.27 4.20 14.62 -22.47 -0.33 3.87 16 3 C -0.16 -2.37 5.76 -106.62 -0.61 -2.98 16 4 C 0.21 2.82 7.27 -39.00 -0.28 2.54 16 5 F -0.12 -1.57 16.81 2.25 0.04 -1.53 16 6 C -0.21 -2.83 9.94 -39.42 -0.39 -3.23 16 7 C 0.26 4.10 6.62 -39.08 -0.26 3.85 16 8 O -0.29 -5.22 9.03 -18.95 -0.17 -5.39 16 9 C 0.20 4.03 1.54 -29.03 -0.04 3.99 16 10 H 0.06 1.10 3.32 -51.93 -0.17 0.93 16 11 C -0.54 -12.85 8.44 -34.44 -0.29 -13.14 16 12 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 13 C 0.09 2.24 5.47 -17.82 -0.10 2.14 16 14 N -0.87 -23.29 13.96 55.43 0.77 -22.52 16 15 Si 0.85 17.98 23.67 -169.99 -4.02 13.95 16 16 H -0.26 -5.32 6.69 56.52 0.38 -4.95 16 17 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.26 -4.95 5.81 56.52 0.33 -4.62 16 19 C -0.04 -0.84 4.90 -104.62 -0.51 -1.35 16 20 C -0.10 -1.68 9.36 -39.58 -0.37 -2.05 16 21 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 16 22 C -0.14 -2.00 10.05 -39.58 -0.40 -2.40 16 23 C -0.12 -1.85 10.05 -39.58 -0.40 -2.24 16 24 C -0.13 -2.32 8.68 -39.58 -0.34 -2.66 16 25 C -0.25 -4.11 8.70 -39.42 -0.34 -4.45 16 26 C 0.22 3.37 7.27 -39.00 -0.28 3.09 16 27 F -0.12 -1.94 16.81 2.25 0.04 -1.90 16 28 H 0.16 1.74 8.06 -52.49 -0.42 1.31 16 29 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.12 2.07 7.73 -52.48 -0.41 1.67 16 31 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 32 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 33 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 34 H 0.11 1.96 5.26 -52.49 -0.28 1.68 16 35 H 0.17 3.08 4.54 -52.49 -0.24 2.84 16 LS Contribution 316.57 15.07 4.77 4.77 Total: -1.00 -25.80 316.57 -5.59 -31.39 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -2.44 Total: 4.81 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -5.36 Total: -17.26 kcal Atomic # 7 Polarization: -30.40 SS G_CDS: 1.55 Total: -28.85 kcal Atomic # 8 Polarization: -5.22 SS G_CDS: -0.17 Total: -5.39 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.08 Total: -3.43 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -4.02 Total: 13.95 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -25.80 -5.59 -31.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228224654.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.318 kcal (2) G-P(sol) polarization free energy of solvation -25.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds