Wall clock time and date at job start Tue Mar 31 2020 11:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.40042 * 120.13445 * 302.32107 * 3 2 1 5 5 F 1.35098 * 120.06993 * 0.02562 * 4 3 2 6 6 C 1.37992 * 119.86276 * 179.97438 * 4 3 2 7 7 C 1.38917 * 120.13528 * 359.97438 * 6 4 3 8 8 O 1.35748 * 119.86224 * 180.02562 * 7 6 4 9 9 C 1.42904 * 116.99679 * 185.76827 * 8 7 6 10 10 H 1.08998 * 109.47122 * 33.28690 * 9 8 7 11 11 C 1.50701 * 109.46875 * 273.28466 * 9 8 7 12 12 H 1.07994 * 120.00159 * 330.17284 * 11 9 8 13 13 C 1.37875 * 119.99713 * 150.16806 * 11 9 8 14 14 N 1.31515 * 119.99861 * 179.60827 * 13 11 9 15 15 Si 1.86800 * 120.00256 * 359.61208 * 13 11 9 16 16 H 1.48500 * 109.46991 * 86.78523 * 15 13 11 17 17 H 1.48496 * 109.47269 * 206.78460 * 15 13 11 18 18 H 1.48498 * 109.47048 * 326.78747 * 15 13 11 19 19 C 1.50704 * 109.47097 * 153.28671 * 9 8 7 20 20 C 1.38235 * 119.99820 * 38.29060 * 19 9 8 21 21 C 1.38237 * 119.99771 * 179.80560 * 20 19 9 22 22 C 1.38235 * 119.99954 * 0.40656 * 21 20 19 23 23 C 1.38233 * 119.99988 * 359.84671 * 22 21 20 24 24 C 1.38235 * 119.99768 * 218.56192 * 19 9 8 25 25 C 1.38920 * 120.26870 * 0.28063 * 7 6 4 26 26 C 1.37983 * 120.13262 * 359.48205 * 25 7 6 27 27 F 1.35105 * 120.06406 * 180.25755 * 26 25 7 28 28 H 1.08002 * 119.92797 * 179.97438 * 6 4 3 29 29 H 0.97002 * 120.00441 * 179.97438 * 14 13 11 30 30 H 1.08003 * 120.00004 * 359.97438 * 20 19 9 31 31 H 1.07995 * 119.99995 * 180.22704 * 21 20 19 32 32 H 1.07997 * 120.00003 * 179.83456 * 22 21 20 33 33 H 1.07999 * 120.00062 * 179.97438 * 23 22 21 34 34 H 1.07999 * 120.00280 * 359.97438 * 24 19 9 35 35 H 1.07999 * 119.92497 * 179.72421 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2714 -0.6466 1.0235 5 9 2.6003 -1.2742 2.0140 6 6 4.6513 -0.6429 1.0177 7 6 5.3427 0.0006 -0.0009 8 8 6.7002 0.0003 -0.0015 9 6 7.3487 0.7852 -1.0042 10 1 6.7483 1.6694 -1.2182 11 6 7.5035 -0.0330 -2.2603 12 1 7.6117 -1.1056 -2.1962 13 6 7.5068 0.5879 -3.4914 14 7 7.6496 -0.1252 -4.5871 15 14 7.3085 2.4420 -3.6029 16 1 8.6381 3.0907 -3.4732 17 1 6.7100 2.7978 -4.9145 18 1 6.4200 2.9115 -2.5096 19 6 8.7079 1.2085 -0.5098 20 6 9.4755 0.3334 0.2358 21 6 10.7239 0.7203 0.6860 22 6 11.2012 1.9852 0.3976 23 6 10.4314 2.8621 -0.3435 24 6 9.1846 2.4738 -0.7971 25 6 4.6506 0.6489 -1.0161 26 6 3.2708 0.6480 -1.0239 27 9 2.5991 1.2745 -2.0147 28 1 5.1948 -1.1414 1.8067 29 1 7.6516 0.3115 -5.4533 30 1 9.1009 -0.6534 0.4644 31 1 11.3252 0.0354 1.2654 32 1 12.1755 2.2884 0.7516 33 1 10.8041 3.8504 -0.5685 34 1 8.5832 3.1589 -1.3763 35 1 5.1938 1.1512 -1.8029 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228224654.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:30 Heat of formation + Delta-G solvation = -51.931944 kcal Electronic energy + Delta-G solvation = -25021.880527 eV Core-core repulsion = 21007.266643 eV Total energy + Delta-G solvation = -4014.613884 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.34726 -50.29076 -41.41739 -39.92574 -38.64060 -37.35205 -35.13856 -33.15331 -31.76874 -31.70379 -31.43424 -29.18527 -25.69176 -24.54127 -24.07607 -23.37161 -21.93702 -20.54282 -19.61619 -19.39965 -18.86885 -17.77668 -17.64138 -17.42158 -16.93053 -16.65435 -16.58087 -16.19620 -15.83406 -15.59945 -15.42053 -14.95602 -14.86774 -14.81785 -14.72691 -14.43747 -14.20503 -14.12603 -13.62616 -13.42695 -13.31217 -13.02507 -12.70756 -12.60268 -12.42505 -11.95086 -11.88815 -11.54467 -11.35498 -10.91042 -10.06909 -9.69572 -9.57862 -9.42512 -8.44786 -6.54392 -0.59838 -0.22744 0.56109 0.63007 1.22033 1.26236 1.33938 1.34619 1.62699 1.94737 2.17121 2.36031 2.52871 2.55099 2.86634 3.09093 3.12639 3.62589 3.69569 3.94926 4.02744 4.16598 4.27535 4.34305 4.42188 4.47030 4.48814 4.71585 4.81306 4.84459 5.03531 5.10952 5.24048 5.26166 5.33404 5.67211 5.72159 5.81606 5.95013 6.19017 6.23162 6.32301 6.59752 7.11727 8.70145 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.014353 B = 0.004814 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.378480 B = 5814.913473 C = 7017.264419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.278 3.722 3 C -0.154 4.154 4 C 0.227 3.773 5 F -0.111 7.111 6 C -0.190 4.190 7 C 0.238 3.762 8 O -0.293 6.293 9 C 0.212 3.788 10 H 0.059 0.941 11 C -0.532 4.532 12 H 0.050 0.950 13 C 0.043 3.957 14 N -0.921 5.921 15 Si 0.893 3.107 16 H -0.245 1.245 17 H -0.285 1.285 18 H -0.231 1.231 19 C -0.074 4.074 20 C -0.114 4.114 21 C -0.121 4.121 22 C -0.131 4.131 23 C -0.122 4.122 24 C -0.150 4.150 25 C -0.257 4.257 26 C 0.216 3.784 27 F -0.124 7.124 28 H 0.187 0.813 29 H 0.272 0.728 30 H 0.120 0.880 31 H 0.146 0.854 32 H 0.152 0.848 33 H 0.144 0.856 34 H 0.108 0.892 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.108 4.585 12.006 13.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.114 5.114 2 C -0.036 4.036 3 C -0.159 4.159 4 C 0.205 3.795 5 F -0.089 7.089 6 C -0.209 4.209 7 C 0.188 3.812 8 O -0.204 6.204 9 C 0.157 3.843 10 H 0.076 0.924 11 C -0.569 4.569 12 H 0.068 0.932 13 C -0.159 4.159 14 N -0.559 5.559 15 Si 0.717 3.283 16 H -0.169 1.169 17 H -0.211 1.211 18 H -0.155 1.155 19 C -0.074 4.074 20 C -0.132 4.132 21 C -0.139 4.139 22 C -0.149 4.149 23 C -0.140 4.140 24 C -0.168 4.168 25 C -0.277 4.277 26 C 0.194 3.806 27 F -0.103 7.103 28 H 0.205 0.795 29 H 0.082 0.918 30 H 0.138 0.862 31 H 0.164 0.836 32 H 0.169 0.831 33 H 0.162 0.838 34 H 0.126 0.874 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.475 4.487 11.922 12.747 hybrid contribution -0.043 0.557 -1.331 1.444 sum 0.432 5.045 10.591 11.739 Atomic orbital electron populations 1.81199 1.12240 1.09788 1.08177 1.25030 0.91959 0.93144 0.93504 1.15568 0.84822 1.14278 1.01280 1.16474 0.88599 0.90746 0.83698 1.91588 1.80187 1.78934 1.58223 1.20317 0.90721 1.07583 1.02258 1.18672 0.83807 0.88380 0.90348 1.86001 1.14633 1.66060 1.53697 1.19571 0.88626 0.91048 0.85037 0.92377 1.21208 1.51581 0.94729 0.89383 0.93210 1.25556 0.93295 1.02078 0.94985 1.69968 1.49028 1.38030 0.98828 0.86664 0.81107 0.81561 0.79009 1.16938 1.21101 1.15455 1.20050 0.96695 0.94008 0.96688 1.21044 0.94984 0.99324 0.97853 1.21461 0.95185 0.97223 0.99984 1.21435 1.00714 0.93754 0.98983 1.21330 0.93567 1.00950 0.98151 1.21067 0.98371 0.95476 1.01872 1.21378 0.92560 1.09811 1.03912 1.16794 0.88600 0.91184 0.84015 1.91550 1.80338 1.79326 1.59048 0.79527 0.91816 0.86237 0.83579 0.83063 0.83847 0.87370 0.83586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -14.41 18.54 19.00 0.35 -14.06 16 2 C 0.28 8.36 14.62 88.33 1.29 9.66 16 3 C -0.15 -4.26 5.76 -21.16 -0.12 -4.38 16 4 C 0.23 5.53 7.27 22.65 0.16 5.69 16 5 F -0.11 -2.58 16.81 44.97 0.76 -1.82 16 6 C -0.19 -4.60 9.94 22.37 0.22 -4.38 16 7 C 0.24 7.51 6.62 22.60 0.15 7.66 16 8 O -0.29 -10.59 9.03 -90.73 -0.82 -11.41 16 9 C 0.21 8.57 1.54 29.10 0.04 8.62 16 10 H 0.06 2.31 3.32 -2.39 -0.01 2.30 16 11 C -0.53 -26.50 8.44 25.60 0.22 -26.29 16 12 H 0.05 2.84 8.06 -2.91 -0.02 2.82 16 13 C 0.04 2.20 5.47 84.65 0.46 2.67 16 14 N -0.92 -52.15 13.96 21.45 0.30 -51.85 16 15 Si 0.89 37.48 23.67 68.60 1.62 39.10 16 16 H -0.25 -9.71 6.69 99.48 0.67 -9.04 16 17 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 18 H -0.23 -8.54 5.81 99.48 0.58 -7.97 16 19 C -0.07 -2.77 4.90 -19.86 -0.10 -2.87 16 20 C -0.11 -3.83 9.36 22.27 0.21 -3.63 16 21 C -0.12 -3.24 10.05 22.27 0.22 -3.02 16 22 C -0.13 -3.22 10.05 22.27 0.22 -3.00 16 23 C -0.12 -3.38 10.05 22.27 0.22 -3.16 16 24 C -0.15 -5.14 8.68 22.27 0.19 -4.95 16 25 C -0.26 -8.62 8.70 22.37 0.19 -8.43 16 26 C 0.22 6.64 7.27 22.65 0.16 6.81 16 27 F -0.12 -4.02 16.81 44.97 0.76 -3.26 16 28 H 0.19 3.47 8.06 -2.91 -0.02 3.45 16 29 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 30 H 0.12 4.00 7.73 -2.91 -0.02 3.97 16 31 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 32 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 33 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 34 H 0.11 3.66 5.26 -2.91 -0.02 3.65 16 35 H 0.15 5.54 4.54 -2.91 -0.01 5.53 16 Total: -1.00 -58.51 316.57 7.74 -50.77 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 1.00 Total: 15.51 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: 3.76 Total: -22.99 kcal Atomic # 7 Polarization: -66.56 SS G_CDS: 0.65 Total: -65.91 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -0.82 Total: -11.41 kcal Atomic # 9 Polarization: -6.60 SS G_CDS: 1.51 Total: -5.09 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 1.62 Total: 39.10 kcal Total: -58.51 7.74 -50.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228224654.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.158 kcal (2) G-P(sol) polarization free energy of solvation -58.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds