Wall clock time and date at job start Tue Mar 31 2020 11:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99788 * 2 1 4 4 H 1.48495 * 109.47004 * 270.00042 * 3 2 1 5 5 H 1.48506 * 109.46971 * 30.00115 * 3 2 1 6 6 H 1.48496 * 109.47121 * 149.99774 * 3 2 1 7 7 C 1.37878 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99249 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00287 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47224 * 180.02562 * 9 7 2 11 11 O 1.42905 * 109.46895 * 60.00373 * 9 7 2 12 12 C 1.35985 * 117.00005 * 84.15800 * 11 9 7 13 13 C 1.38564 * 120.07527 * 354.59832 * 12 11 9 14 14 C 1.38246 * 120.00123 * 180.02562 * 13 12 11 15 15 N 1.48004 * 119.92450 * 180.02562 * 14 13 12 16 16 O 1.21800 * 120.00283 * 0.02562 * 15 14 13 17 17 O 1.21806 * 119.99782 * 179.97438 * 15 14 13 18 18 C 1.38251 * 120.14468 * 359.72350 * 14 13 12 19 19 C 1.38242 * 120.14886 * 0.55287 * 18 14 13 20 20 C 1.38568 * 119.99678 * 359.44622 * 19 18 14 21 21 O 1.35992 * 120.07664 * 180.25337 * 20 19 18 22 22 C 1.50699 * 109.47195 * 300.00398 * 9 7 2 23 23 C 1.38242 * 119.99821 * 84.72326 * 22 9 7 24 24 C 1.38240 * 119.99569 * 179.81019 * 23 22 9 25 25 C 1.38233 * 120.00222 * 0.39775 * 24 23 22 26 26 C 1.38239 * 119.99842 * 359.85513 * 25 24 23 27 27 C 1.38232 * 120.00029 * 359.96260 * 26 25 24 28 28 H 0.97005 * 120.00308 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.00281 * 359.97438 * 13 12 11 30 30 H 1.07999 * 119.92840 * 180.29727 * 18 14 13 31 31 H 1.08000 * 120.00270 * 179.72251 * 19 18 14 32 32 H 0.96700 * 113.99734 * 89.99854 * 21 20 19 33 33 H 1.07996 * 120.00260 * 0.02562 * 23 22 9 34 34 H 1.08000 * 119.99596 * 180.23394 * 24 23 22 35 35 H 1.07998 * 120.00217 * 179.83793 * 25 24 23 36 36 H 1.07996 * 120.00078 * 179.97438 * 26 25 24 37 37 H 1.08003 * 120.00412 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 1.9594 -3.3276 -0.0005 11 8 0.4292 -2.5746 -1.1671 12 6 1.0182 -3.0180 -2.3097 13 6 2.3812 -3.2660 -2.3372 14 6 2.9786 -3.7162 -3.4998 15 7 4.4345 -3.9811 -3.5272 16 8 5.1048 -3.8028 -2.5260 17 8 4.9621 -4.3782 -4.5507 18 6 2.2180 -3.9255 -4.6352 19 6 0.8586 -3.6747 -4.6162 20 6 0.2536 -3.2233 -3.4542 21 8 -1.0844 -2.9809 -3.4322 22 6 0.3851 -2.5793 1.2302 23 6 -0.8704 -2.0007 1.2307 24 6 -1.6663 -2.0776 2.3584 25 6 -1.2035 -2.7259 3.4882 26 6 0.0540 -3.3000 3.4893 27 6 0.8484 -3.2263 2.3604 28 1 -0.4851 0.8401 -0.0004 29 1 2.9771 -3.1068 -1.4507 30 1 2.6874 -4.2819 -5.5401 31 1 0.2675 -3.8347 -5.5058 32 1 -1.6185 -3.7459 -3.1782 33 1 -1.2308 -1.4916 0.3491 34 1 -2.6486 -1.6288 2.3576 35 1 -1.8243 -2.7837 4.3700 36 1 0.4158 -3.8061 4.3720 37 1 1.8308 -3.6752 2.3611 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229396469.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:53 Heat of formation + Delta-G solvation = -20.685972 kcal Electronic energy + Delta-G solvation = -26112.576915 eV Core-core repulsion = 22210.405473 eV Total energy + Delta-G solvation = -3902.171442 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.86458 -40.06271 -38.48839 -37.09423 -36.42182 -36.22973 -33.30988 -30.96738 -30.80002 -29.94665 -29.43252 -27.33867 -25.78851 -23.80391 -22.42563 -22.04351 -21.49776 -20.33343 -19.17464 -18.41078 -18.37954 -17.23017 -17.12358 -16.33677 -15.95014 -15.65282 -15.35295 -15.00725 -14.24092 -14.08033 -13.89087 -13.65233 -13.29615 -12.90513 -12.50729 -12.38836 -12.17551 -11.75418 -11.70086 -11.61952 -11.30859 -11.12644 -10.90526 -10.85360 -10.75832 -10.65703 -10.47966 -10.25276 -9.64504 -9.53668 -9.11185 -8.99615 -8.01555 -7.80181 -7.67678 -6.25994 -4.63167 0.12392 1.32892 1.68331 1.73927 2.24905 2.42487 3.11515 3.19418 3.22902 3.52492 3.88244 4.12643 4.21796 4.71775 4.79028 4.92737 4.94077 5.14360 5.46511 5.62801 5.66505 5.75181 5.84545 5.89859 6.00146 6.05932 6.17389 6.23909 6.39663 6.59063 6.65376 6.73086 6.86505 7.08662 7.30092 7.39365 7.51259 7.63909 7.69719 7.81036 7.96515 8.06632 8.15603 8.53761 9.14961 10.56987 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.011871 B = 0.005143 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.072798 B = 5443.212820 C = 5863.702325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.086 3.914 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.232 3.768 10 H 0.037 0.963 11 O -0.271 6.271 12 C 0.156 3.844 13 C -0.136 4.136 14 C -0.016 4.016 15 N 0.034 4.966 16 O -0.161 6.161 17 O -0.176 6.176 18 C -0.106 4.106 19 C -0.113 4.113 20 C 0.105 3.895 21 O -0.475 6.475 22 C -0.047 4.047 23 C -0.046 4.046 24 C -0.151 4.151 25 C -0.140 4.140 26 C -0.147 4.147 27 C -0.123 4.123 28 H 0.268 0.732 29 H 0.167 0.833 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.389 0.611 33 H 0.165 0.835 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.128 -7.235 -3.512 8.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.123 4.123 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.587 4.587 8 H 0.091 0.909 9 C 0.180 3.820 10 H 0.055 0.945 11 O -0.181 6.181 12 C 0.105 3.895 13 C -0.156 4.156 14 C -0.100 4.100 15 N 0.551 4.449 16 O -0.378 6.378 17 O -0.389 6.389 18 C -0.125 4.125 19 C -0.132 4.132 20 C 0.058 3.942 21 O -0.285 6.285 22 C -0.048 4.048 23 C -0.065 4.065 24 C -0.169 4.169 25 C -0.159 4.159 26 C -0.165 4.165 27 C -0.142 4.142 28 H 0.079 0.921 29 H 0.185 0.815 30 H 0.166 0.834 31 H 0.167 0.833 32 H 0.245 0.755 33 H 0.182 0.818 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.030 -6.340 -3.604 8.332 hybrid contribution 0.967 0.640 0.449 1.243 sum -3.063 -5.700 -3.155 7.199 Atomic orbital electron populations 1.69788 1.05942 1.26940 1.44695 1.25041 0.94905 0.99746 0.92563 0.86482 0.80156 0.82371 0.78592 1.20192 1.20663 1.19330 1.21408 0.93499 0.89886 1.53903 0.90944 1.19192 0.87373 0.96435 0.79041 0.94477 1.86466 1.40529 1.75625 1.15528 1.19274 0.89869 0.91250 0.89124 1.21201 0.95000 1.00671 0.98718 1.20851 0.79587 1.11502 0.98017 1.43654 1.03775 0.97492 0.99968 1.94549 1.62886 1.55524 1.24816 1.94472 1.74444 1.47908 1.22053 1.20542 0.93306 1.01449 0.97224 1.21057 0.93810 1.00148 0.98183 1.18136 0.84792 1.00373 0.90874 1.84897 1.13093 1.39719 1.90794 1.19667 0.94418 0.95887 0.94793 1.21882 0.92675 0.92347 0.99622 1.21162 0.99759 1.01444 0.94585 1.20886 0.96357 1.00727 0.97895 1.20725 0.95237 1.02856 0.97698 1.20763 0.99093 1.00724 0.93577 0.92109 0.81526 0.83441 0.83340 0.75464 0.81787 0.87752 0.87981 0.87646 0.87463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.95 8.51 55.43 0.47 -20.48 16 2 C 0.09 2.13 5.24 -17.82 -0.09 2.04 16 3 Si 0.90 20.05 29.54 -169.99 -5.02 15.02 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.55 -13.53 7.92 -34.44 -0.27 -13.80 16 8 H 0.07 1.79 7.81 -52.48 -0.41 1.38 16 9 C 0.23 5.18 2.11 -29.04 -0.06 5.12 16 10 H 0.04 0.78 6.28 -51.93 -0.33 0.46 16 11 O -0.27 -5.89 8.14 -34.20 -0.28 -6.17 16 12 C 0.16 2.98 6.60 -39.12 -0.26 2.72 16 13 C -0.14 -2.54 8.20 -39.46 -0.32 -2.86 16 14 C -0.02 -0.28 6.85 -79.95 -0.55 -0.83 16 15 N 0.03 0.61 4.45 33.96 0.15 0.76 16 16 O -0.16 -3.11 18.44 -29.46 -0.54 -3.65 16 17 O -0.18 -3.08 18.44 -29.46 -0.54 -3.62 16 18 C -0.11 -1.48 9.55 -39.58 -0.38 -1.86 16 19 C -0.11 -1.48 9.98 -39.46 -0.39 -1.87 16 20 C 0.10 1.67 6.72 -39.12 -0.26 1.41 16 21 O -0.48 -7.13 13.29 -34.22 -0.45 -7.58 16 22 C -0.05 -1.03 4.80 -104.62 -0.50 -1.53 16 23 C -0.05 -1.01 7.46 -39.58 -0.30 -1.30 16 24 C -0.15 -2.91 10.05 -39.58 -0.40 -3.30 16 25 C -0.14 -2.49 10.05 -39.58 -0.40 -2.89 16 26 C -0.15 -2.62 10.05 -39.58 -0.40 -3.02 16 27 C -0.12 -2.43 9.68 -39.59 -0.38 -2.82 16 28 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 29 H 0.17 3.31 5.22 -52.49 -0.27 3.04 16 30 H 0.15 1.74 7.60 -52.49 -0.40 1.34 16 31 H 0.15 1.44 8.06 -52.49 -0.42 1.01 16 32 H 0.39 3.82 9.06 45.56 0.41 4.23 16 33 H 0.17 3.88 5.50 -52.49 -0.29 3.59 16 34 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.10 1.52 8.06 -52.49 -0.42 1.09 16 36 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.11 1.93 8.06 -52.48 -0.42 1.51 16 LS Contribution 327.45 15.07 4.93 4.93 Total: -1.00 -27.79 327.45 -8.78 -36.58 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -2.53 Total: 9.01 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -4.97 Total: -24.80 kcal Atomic # 7 Polarization: -20.34 SS G_CDS: 0.62 Total: -19.72 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -1.82 Total: -21.03 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.79 -8.78 -36.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229396469.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.891 kcal (2) G-P(sol) polarization free energy of solvation -27.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds