Wall clock time and date at job start Tue Mar 31 2020 11:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00341 * 2 1 4 4 H 1.48502 * 109.46976 * 270.00116 * 3 2 1 5 5 H 1.48508 * 109.47018 * 29.99641 * 3 2 1 6 6 H 1.48494 * 109.47317 * 150.00080 * 3 2 1 7 7 C 1.37882 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99911 * 173.73872 * 7 2 1 9 9 C 1.50692 * 120.00283 * 353.73828 * 7 2 1 10 10 H 1.09001 * 109.46991 * 33.71349 * 9 7 2 11 11 O 1.42901 * 109.47270 * 153.71218 * 9 7 2 12 12 C 1.35988 * 117.00137 * 275.87507 * 11 9 7 13 13 C 1.38571 * 120.07313 * 5.13580 * 12 11 9 14 14 C 1.38240 * 119.99735 * 180.02562 * 13 12 11 15 15 N 1.48002 * 119.92529 * 180.02562 * 14 13 12 16 16 O 1.21795 * 120.00308 * 359.97438 * 15 14 13 17 17 O 1.21800 * 120.00100 * 180.02562 * 15 14 13 18 18 C 1.38253 * 120.14926 * 359.97438 * 14 13 12 19 19 C 1.38250 * 120.14629 * 0.02562 * 18 14 13 20 20 C 1.38559 * 119.99631 * 359.72056 * 19 18 14 21 21 O 1.36001 * 120.07621 * 180.27562 * 20 19 18 22 22 C 1.50698 * 109.47104 * 273.71627 * 9 7 2 23 23 C 1.38233 * 119.99977 * 277.82196 * 22 9 7 24 24 C 1.38239 * 120.00011 * 179.78722 * 23 22 9 25 25 C 1.38237 * 119.99994 * 0.44561 * 24 23 22 26 26 C 1.38237 * 119.99794 * 359.81274 * 25 24 23 27 27 C 1.38234 * 120.00189 * 359.97404 * 26 25 24 28 28 H 0.96998 * 119.99569 * 185.07543 * 1 2 3 29 29 H 1.07990 * 120.00175 * 359.97438 * 13 12 11 30 30 H 1.08001 * 119.93141 * 180.02562 * 18 14 13 31 31 H 1.07993 * 119.99802 * 179.97438 * 19 18 14 32 32 H 0.96705 * 113.99870 * 270.26171 * 21 20 19 33 33 H 1.07994 * 119.99947 * 359.97438 * 23 22 9 34 34 H 1.08000 * 120.00290 * 180.27243 * 24 23 22 35 35 H 1.07996 * 120.00057 * 179.83489 * 25 24 23 36 36 H 1.08006 * 119.99966 * 180.02562 * 26 25 24 37 37 H 1.08002 * 120.00181 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0797 -1.1970 -0.1015 9 6 1.2578 -2.4952 0.1435 10 1 0.2858 -2.4115 -0.3426 11 8 2.0084 -3.5451 -0.4701 12 6 1.8580 -3.7090 -1.8116 13 6 1.0908 -2.8131 -2.5389 14 6 0.9384 -2.9816 -3.9026 15 7 0.1191 -2.0234 -4.6779 16 8 -0.4203 -1.0881 -4.1145 17 8 -0.0164 -2.1708 -5.8793 18 6 1.5505 -4.0425 -4.5438 19 6 2.3173 -4.9399 -3.8241 20 6 2.4783 -4.7739 -2.4580 21 8 3.2368 -5.6526 -1.7493 22 6 1.0633 -2.8048 1.6054 23 6 2.0815 -3.3987 2.3275 24 6 1.9047 -3.6787 3.6697 25 6 0.7064 -3.3731 4.2875 26 6 -0.3137 -2.7841 3.5640 27 6 -0.1353 -2.5001 2.2230 28 1 -0.4849 -0.8368 0.0743 29 1 0.6113 -1.9838 -2.0404 30 1 1.4295 -4.1705 -5.6094 31 1 2.7940 -5.7680 -4.3274 32 1 2.7429 -6.4083 -1.4028 33 1 3.0161 -3.6412 1.8439 34 1 2.7017 -4.1387 4.2350 35 1 0.5673 -3.5943 5.3354 36 1 -1.2498 -2.5450 4.0468 37 1 -0.9321 -2.0395 1.6578 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229396470.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:57 Heat of formation + Delta-G solvation = -31.727321 kcal Electronic energy + Delta-G solvation = -26043.486398 eV Core-core repulsion = 22140.836168 eV Total energy + Delta-G solvation = -3902.650231 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.83117 -40.27436 -38.80317 -37.40697 -36.59097 -36.17172 -33.71174 -31.13448 -30.88439 -30.31386 -29.65582 -26.91044 -25.77780 -23.86428 -22.64790 -22.23989 -21.75529 -20.60167 -19.23459 -18.54839 -18.35738 -17.53728 -17.16516 -16.66569 -16.27721 -15.84953 -15.56569 -14.71730 -14.37496 -14.26627 -13.96741 -13.90293 -13.58200 -13.02607 -12.82332 -12.60679 -12.30977 -12.20586 -11.99217 -11.56818 -11.25485 -11.03298 -10.92227 -10.86672 -10.76522 -10.63118 -10.55051 -10.30816 -10.08139 -9.36519 -9.22548 -8.72242 -8.35371 -8.17994 -7.89375 -6.74265 -4.55494 0.08527 1.19257 1.61810 1.74286 1.94889 1.98130 3.31137 3.32413 3.38880 3.48592 3.60290 4.02595 4.25362 4.43389 4.61816 4.84467 4.97415 4.98969 5.30632 5.41838 5.43457 5.55756 5.59022 5.73182 5.82845 5.94474 6.00778 6.07816 6.16962 6.22968 6.47237 6.56224 6.62006 6.71708 7.01745 7.03865 7.21323 7.42020 7.44824 7.59447 7.74623 8.01052 8.16510 8.39411 9.14016 10.58633 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.010985 B = 0.005798 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.273845 B = 4827.716540 C = 6290.750632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.038 3.962 3 Si 1.070 2.930 4 H -0.282 1.282 5 H -0.278 1.278 6 H -0.285 1.285 7 C -0.620 4.620 8 H 0.067 0.933 9 C 0.221 3.779 10 H 0.046 0.954 11 O -0.295 6.295 12 C 0.144 3.856 13 C -0.121 4.121 14 C -0.017 4.017 15 N 0.029 4.971 16 O -0.143 6.143 17 O -0.177 6.177 18 C -0.097 4.097 19 C -0.114 4.114 20 C 0.106 3.894 21 O -0.479 6.479 22 C -0.041 4.041 23 C -0.103 4.103 24 C -0.128 4.128 25 C -0.143 4.143 26 C -0.122 4.122 27 C -0.114 4.114 28 H 0.270 0.730 29 H 0.178 0.822 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.391 0.609 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 -10.784 -0.889 10.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.171 4.171 3 Si 0.896 3.104 4 H -0.208 1.208 5 H -0.204 1.204 6 H -0.211 1.211 7 C -0.656 4.656 8 H 0.085 0.915 9 C 0.167 3.833 10 H 0.063 0.937 11 O -0.207 6.207 12 C 0.094 3.906 13 C -0.141 4.141 14 C -0.100 4.100 15 N 0.548 4.452 16 O -0.363 6.363 17 O -0.389 6.389 18 C -0.116 4.116 19 C -0.134 4.134 20 C 0.060 3.940 21 O -0.289 6.289 22 C -0.042 4.042 23 C -0.121 4.121 24 C -0.146 4.146 25 C -0.161 4.161 26 C -0.140 4.140 27 C -0.133 4.133 28 H 0.082 0.918 29 H 0.195 0.805 30 H 0.169 0.831 31 H 0.169 0.831 32 H 0.247 0.753 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.591 -9.332 -0.572 9.702 hybrid contribution -0.426 -1.381 0.103 1.449 sum 2.165 -10.713 -0.469 10.939 Atomic orbital electron populations 1.70893 1.06706 1.30976 1.42516 1.25929 0.96223 1.02804 0.92105 0.83513 0.74882 0.74577 0.77421 1.20795 1.20367 1.21071 1.22194 0.96120 0.90319 1.57015 0.91497 1.19428 0.92403 0.84894 0.86526 0.93674 1.86100 1.65165 1.54352 1.15126 1.19127 0.92796 0.93036 0.85633 1.21418 0.99972 1.01056 0.91620 1.20880 1.02421 0.94625 0.92088 1.43615 0.99531 1.01032 1.01019 1.94643 1.47092 1.22134 1.72407 1.94460 1.66691 1.80232 0.97505 1.20633 0.96876 0.92608 1.01506 1.21053 0.99326 1.00559 0.92416 1.18080 0.94645 0.91330 0.89919 1.84871 1.35552 1.36933 1.71543 1.20113 0.92867 0.94583 0.96633 1.20889 0.98908 0.98765 0.93575 1.21025 0.97225 1.01395 0.94957 1.20927 0.94242 1.01797 0.99156 1.20967 0.98802 0.99953 0.94268 1.20941 0.97072 1.00196 0.95069 0.91802 0.80481 0.83124 0.83061 0.75278 0.86322 0.86974 0.87083 0.86803 0.86276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.55 13.63 55.43 0.76 -22.80 16 2 C 0.04 0.98 5.45 -17.82 -0.10 0.88 16 3 Si 1.07 24.06 29.91 -169.99 -5.08 18.98 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.62 -15.77 7.66 -34.44 -0.26 -16.03 16 8 H 0.07 1.78 7.82 -52.49 -0.41 1.37 16 9 C 0.22 5.03 1.67 -29.04 -0.05 4.98 16 10 H 0.05 1.08 4.63 -51.93 -0.24 0.84 16 11 O -0.30 -6.19 8.82 -34.21 -0.30 -6.50 16 12 C 0.14 2.71 6.60 -39.12 -0.26 2.46 16 13 C -0.12 -2.41 8.20 -39.46 -0.32 -2.73 16 14 C -0.02 -0.31 6.85 -79.95 -0.55 -0.85 16 15 N 0.03 0.57 4.45 33.96 0.15 0.72 16 16 O -0.14 -3.12 18.44 -29.46 -0.54 -3.67 16 17 O -0.18 -3.27 18.44 -29.46 -0.54 -3.82 16 18 C -0.10 -1.36 9.55 -39.57 -0.38 -1.74 16 19 C -0.11 -1.43 9.98 -39.46 -0.39 -1.83 16 20 C 0.11 1.61 6.72 -39.12 -0.26 1.35 16 21 O -0.48 -6.44 13.29 -34.25 -0.46 -6.89 16 22 C -0.04 -0.88 4.97 -104.62 -0.52 -1.40 16 23 C -0.10 -2.01 9.36 -39.58 -0.37 -2.38 16 24 C -0.13 -2.14 10.05 -39.58 -0.40 -2.54 16 25 C -0.14 -2.29 10.05 -39.58 -0.40 -2.69 16 26 C -0.12 -2.10 10.05 -39.58 -0.40 -2.50 16 27 C -0.11 -2.30 9.47 -39.58 -0.37 -2.68 16 28 H 0.27 7.04 5.11 -40.82 -0.21 6.83 16 29 H 0.18 4.09 5.22 -52.49 -0.27 3.82 16 30 H 0.15 1.76 7.60 -52.49 -0.40 1.36 16 31 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.39 3.29 9.07 45.56 0.41 3.70 16 33 H 0.12 2.31 7.71 -52.49 -0.40 1.90 16 34 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 36 H 0.11 1.67 8.06 -52.48 -0.42 1.24 16 37 H 0.12 2.45 6.80 -52.49 -0.36 2.09 16 LS Contribution 331.12 15.07 4.99 4.99 Total: -1.00 -29.51 331.12 -8.43 -37.94 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -2.37 Total: 8.74 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: -5.03 Total: -27.71 kcal Atomic # 7 Polarization: -22.98 SS G_CDS: 0.91 Total: -22.07 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -1.84 Total: -20.87 kcal Atomic # 14 Polarization: 24.06 SS G_CDS: -5.08 Total: 18.98 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.51 -8.43 -37.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229396470.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.214 kcal (2) G-P(sol) polarization free energy of solvation -29.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds