Wall clock time and date at job start Tue Mar 31 2020 11:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00341 * 2 1 4 4 H 1.48502 * 109.46976 * 270.00116 * 3 2 1 5 5 H 1.48508 * 109.47018 * 29.99641 * 3 2 1 6 6 H 1.48494 * 109.47317 * 150.00080 * 3 2 1 7 7 C 1.37882 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99911 * 173.73872 * 7 2 1 9 9 C 1.50692 * 120.00283 * 353.73828 * 7 2 1 10 10 H 1.09001 * 109.46991 * 33.71349 * 9 7 2 11 11 O 1.42901 * 109.47270 * 153.71218 * 9 7 2 12 12 C 1.35988 * 117.00137 * 275.87507 * 11 9 7 13 13 C 1.38571 * 120.07313 * 5.13580 * 12 11 9 14 14 C 1.38240 * 119.99735 * 180.02562 * 13 12 11 15 15 N 1.48002 * 119.92529 * 180.02562 * 14 13 12 16 16 O 1.21795 * 120.00308 * 359.97438 * 15 14 13 17 17 O 1.21800 * 120.00100 * 180.02562 * 15 14 13 18 18 C 1.38253 * 120.14926 * 359.97438 * 14 13 12 19 19 C 1.38250 * 120.14629 * 0.02562 * 18 14 13 20 20 C 1.38559 * 119.99631 * 359.72056 * 19 18 14 21 21 O 1.36001 * 120.07621 * 180.27562 * 20 19 18 22 22 C 1.50698 * 109.47104 * 273.71627 * 9 7 2 23 23 C 1.38233 * 119.99977 * 277.82196 * 22 9 7 24 24 C 1.38239 * 120.00011 * 179.78722 * 23 22 9 25 25 C 1.38237 * 119.99994 * 0.44561 * 24 23 22 26 26 C 1.38237 * 119.99794 * 359.81274 * 25 24 23 27 27 C 1.38234 * 120.00189 * 359.97404 * 26 25 24 28 28 H 0.96998 * 119.99569 * 185.07543 * 1 2 3 29 29 H 1.07990 * 120.00175 * 359.97438 * 13 12 11 30 30 H 1.08001 * 119.93141 * 180.02562 * 18 14 13 31 31 H 1.07993 * 119.99802 * 179.97438 * 19 18 14 32 32 H 0.96705 * 113.99870 * 270.26171 * 21 20 19 33 33 H 1.07994 * 119.99947 * 359.97438 * 23 22 9 34 34 H 1.08000 * 120.00290 * 180.27243 * 24 23 22 35 35 H 1.07996 * 120.00057 * 179.83489 * 25 24 23 36 36 H 1.08006 * 119.99966 * 180.02562 * 26 25 24 37 37 H 1.08002 * 120.00181 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0797 -1.1970 -0.1015 9 6 1.2578 -2.4952 0.1435 10 1 0.2858 -2.4115 -0.3426 11 8 2.0084 -3.5451 -0.4701 12 6 1.8580 -3.7090 -1.8116 13 6 1.0908 -2.8131 -2.5389 14 6 0.9384 -2.9816 -3.9026 15 7 0.1191 -2.0234 -4.6779 16 8 -0.4203 -1.0881 -4.1145 17 8 -0.0164 -2.1708 -5.8793 18 6 1.5505 -4.0425 -4.5438 19 6 2.3173 -4.9399 -3.8241 20 6 2.4783 -4.7739 -2.4580 21 8 3.2368 -5.6526 -1.7493 22 6 1.0633 -2.8048 1.6054 23 6 2.0815 -3.3987 2.3275 24 6 1.9047 -3.6787 3.6697 25 6 0.7064 -3.3731 4.2875 26 6 -0.3137 -2.7841 3.5640 27 6 -0.1353 -2.5001 2.2230 28 1 -0.4849 -0.8368 0.0743 29 1 0.6113 -1.9838 -2.0404 30 1 1.4295 -4.1705 -5.6094 31 1 2.7940 -5.7680 -4.3274 32 1 2.7429 -6.4083 -1.4028 33 1 3.0161 -3.6412 1.8439 34 1 2.7017 -4.1387 4.2350 35 1 0.5673 -3.5943 5.3354 36 1 -1.2498 -2.5450 4.0468 37 1 -0.9321 -2.0395 1.6578 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229396470.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:57 Heat of formation + Delta-G solvation = -48.899650 kcal Electronic energy + Delta-G solvation = -26044.231046 eV Core-core repulsion = 22140.836168 eV Total energy + Delta-G solvation = -3903.394879 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.34582 -41.67865 -40.23232 -38.79600 -37.83588 -37.71936 -35.54658 -32.69045 -32.17411 -31.75112 -31.05383 -28.62502 -27.25043 -25.61780 -24.01331 -23.65107 -23.18076 -22.11602 -20.72125 -19.87698 -19.74149 -19.34327 -18.70566 -18.14252 -17.73487 -17.18070 -16.87806 -16.18161 -15.95358 -15.75733 -15.59950 -15.30444 -14.90534 -14.45741 -14.23367 -14.06676 -13.89162 -13.58657 -13.45765 -13.07878 -12.83108 -12.79958 -12.55251 -12.36005 -12.34961 -12.08316 -12.02890 -11.92068 -11.65442 -11.13437 -10.70209 -10.45254 -9.79109 -9.60793 -9.45648 -8.77392 -6.58771 -1.34408 -0.06455 0.19013 0.31592 0.50335 0.53694 1.42385 1.48723 1.66364 2.07894 2.16451 2.41449 2.84375 2.91637 3.06015 3.39629 3.51291 3.70538 3.97751 4.02341 4.16066 4.22901 4.29838 4.35334 4.37738 4.60296 4.66398 4.74854 4.76041 4.85262 5.07306 5.11499 5.18480 5.29597 5.53305 5.60285 5.61278 5.78155 5.81865 6.15921 6.28948 6.35683 6.46025 6.64515 7.17803 8.55179 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.010985 B = 0.005798 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.273845 B = 4827.716540 C = 6290.750632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.003 4.003 3 Si 1.102 2.898 4 H -0.280 1.280 5 H -0.275 1.275 6 H -0.270 1.270 7 C -0.623 4.623 8 H 0.047 0.953 9 C 0.234 3.766 10 H 0.019 0.981 11 O -0.306 6.306 12 C 0.105 3.895 13 C -0.147 4.147 14 C -0.038 4.038 15 N 0.031 4.969 16 O -0.243 6.243 17 O -0.113 6.113 18 C -0.068 4.068 19 C -0.088 4.088 20 C 0.131 3.869 21 O -0.482 6.482 22 C -0.071 4.071 23 C -0.118 4.118 24 C -0.120 4.120 25 C -0.130 4.130 26 C -0.122 4.122 27 C -0.138 4.138 28 H 0.263 0.737 29 H 0.131 0.869 30 H 0.191 0.809 31 H 0.210 0.790 32 H 0.417 0.583 33 H 0.112 0.888 34 H 0.150 0.850 35 H 0.156 0.844 36 H 0.141 0.859 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.761 -14.060 -0.995 14.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.206 4.206 3 Si 0.924 3.076 4 H -0.206 1.206 5 H -0.200 1.200 6 H -0.195 1.195 7 C -0.660 4.660 8 H 0.065 0.935 9 C 0.179 3.821 10 H 0.037 0.963 11 O -0.219 6.219 12 C 0.057 3.943 13 C -0.167 4.167 14 C -0.122 4.122 15 N 0.547 4.453 16 O -0.438 6.438 17 O -0.346 6.346 18 C -0.087 4.087 19 C -0.106 4.106 20 C 0.084 3.916 21 O -0.296 6.296 22 C -0.072 4.072 23 C -0.136 4.136 24 C -0.138 4.138 25 C -0.148 4.148 26 C -0.139 4.139 27 C -0.156 4.156 28 H 0.074 0.926 29 H 0.149 0.851 30 H 0.208 0.792 31 H 0.227 0.773 32 H 0.278 0.722 33 H 0.130 0.870 34 H 0.168 0.832 35 H 0.174 0.826 36 H 0.159 0.841 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.464 -12.516 -0.490 13.297 hybrid contribution -0.920 -0.718 -0.059 1.169 sum 3.543 -13.233 -0.549 13.711 Atomic orbital electron populations 1.70933 1.07364 1.30686 1.44861 1.26940 0.96394 1.05467 0.91780 0.83128 0.74683 0.72160 0.77640 1.20550 1.19969 1.19507 1.22265 0.95042 0.92022 1.56665 0.93487 1.19082 0.90848 0.84485 0.87682 0.96307 1.86021 1.65494 1.53796 1.16603 1.19613 0.94877 0.94994 0.84860 1.21074 1.01648 1.01000 0.92962 1.21073 1.03816 0.95813 0.91451 1.43870 0.99342 1.01022 1.01086 1.94688 1.51281 1.24892 1.72926 1.94371 1.63954 1.78758 0.97496 1.21213 0.94239 0.89999 1.03214 1.21619 0.97461 1.00864 0.90700 1.18290 0.92365 0.89898 0.91002 1.84805 1.35667 1.37519 1.71626 1.20103 0.94368 0.96883 0.95797 1.20948 0.98090 0.99456 0.95095 1.21437 0.98582 1.00059 0.93684 1.21426 0.92961 0.99440 1.00977 1.21318 1.00574 0.99144 0.92901 1.20964 0.96491 1.01475 0.96710 0.92559 0.85093 0.79211 0.77328 0.72238 0.87019 0.83239 0.82644 0.84095 0.88481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.93 13.63 21.45 0.29 -52.64 16 2 C 0.00 -0.15 5.45 84.66 0.46 0.31 16 3 Si 1.10 51.11 29.91 68.60 2.05 53.16 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.62 -34.29 7.66 25.60 0.20 -34.09 16 8 H 0.05 2.69 7.82 -2.91 -0.02 2.66 16 9 C 0.23 11.59 1.67 29.10 0.05 11.64 16 10 H 0.02 1.04 4.63 -2.39 -0.01 1.03 16 11 O -0.31 -13.66 8.82 -79.55 -0.70 -14.37 16 12 C 0.11 4.12 6.60 22.57 0.15 4.26 16 13 C -0.15 -6.31 8.20 22.35 0.18 -6.12 16 14 C -0.04 -1.39 6.85 36.38 0.25 -1.14 16 15 N 0.03 1.27 4.45 -46.46 -0.21 1.06 16 16 O -0.24 -11.75 18.44 18.89 0.35 -11.41 16 17 O -0.11 -4.01 18.44 18.89 0.35 -3.66 16 18 C -0.07 -1.64 9.55 22.28 0.21 -1.43 16 19 C -0.09 -1.76 9.98 22.35 0.22 -1.54 16 20 C 0.13 3.67 6.72 22.57 0.15 3.82 16 21 O -0.48 -11.39 13.29 -79.69 -1.06 -12.45 16 22 C -0.07 -3.21 4.97 -19.87 -0.10 -3.31 16 23 C -0.12 -4.64 9.36 22.27 0.21 -4.43 16 24 C -0.12 -3.72 10.05 22.27 0.22 -3.50 16 25 C -0.13 -3.76 10.05 22.27 0.22 -3.54 16 26 C -0.12 -4.09 10.05 22.27 0.22 -3.86 16 27 C -0.14 -5.87 9.47 22.27 0.21 -5.66 16 28 H 0.26 15.34 5.11 -92.71 -0.47 14.87 16 29 H 0.13 6.91 5.22 -2.92 -0.02 6.90 16 30 H 0.19 3.22 7.60 -2.91 -0.02 3.20 16 31 H 0.21 1.97 8.06 -2.91 -0.02 1.95 16 32 H 0.42 5.50 9.07 -74.05 -0.67 4.83 16 33 H 0.11 4.44 7.71 -2.91 -0.02 4.42 16 34 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 35 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 36 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 37 H 0.10 4.44 6.80 -2.91 -0.02 4.42 16 Total: -1.00 -73.62 331.12 4.71 -68.92 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.77 Total: 19.96 kcal Atomic # 6 Polarization: -51.45 SS G_CDS: 2.87 Total: -48.58 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.09 Total: -51.58 kcal Atomic # 8 Polarization: -40.82 SS G_CDS: -1.06 Total: -41.88 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 2.05 Total: 53.16 kcal Total: -73.62 4.71 -68.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229396470.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.016 kcal (2) G-P(sol) polarization free energy of solvation -73.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds