Wall clock time and date at job start Tue Mar 31 2020 11:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39815 * 120.15708 * 171.11855 * 3 2 1 5 5 C 1.37887 * 119.89791 * 180.02562 * 4 3 2 6 6 F 1.35100 * 119.88494 * 180.02562 * 5 4 3 7 7 C 1.38971 * 120.22746 * 359.97438 * 5 4 3 8 8 F 1.35100 * 119.84384 * 180.02562 * 7 5 4 9 9 C 1.38344 * 120.31885 * 359.75323 * 7 5 4 10 10 C 1.38546 * 120.09731 * 0.50738 * 9 7 5 11 11 O 1.35739 * 120.11512 * 179.76982 * 10 9 7 12 12 C 1.42903 * 117.00178 * 354.47497 * 11 10 9 13 13 H 1.08998 * 109.47163 * 324.57320 * 12 11 10 14 14 C 1.50700 * 109.46793 * 84.57111 * 12 11 10 15 15 H 1.08000 * 120.00173 * 29.54290 * 14 12 11 16 16 C 1.37875 * 119.99653 * 209.54723 * 14 12 11 17 17 N 1.31509 * 120.00383 * 1.79712 * 16 14 12 18 18 Si 1.86805 * 119.99888 * 181.80356 * 16 14 12 19 19 H 1.48496 * 109.47442 * 179.97438 * 18 16 14 20 20 H 1.48503 * 109.46763 * 299.99627 * 18 16 14 21 21 H 1.48497 * 109.47512 * 59.99577 * 18 16 14 22 22 C 1.50696 * 109.47290 * 204.57112 * 12 11 10 23 23 C 1.38232 * 120.00311 * 320.99281 * 22 12 11 24 24 C 1.38236 * 120.00335 * 179.81458 * 23 22 12 25 25 C 1.38237 * 119.99925 * 0.39029 * 24 23 22 26 26 C 1.38233 * 119.99622 * 359.86316 * 25 24 23 27 27 C 1.38236 * 120.00390 * 359.95390 * 26 25 24 28 28 H 1.08001 * 120.04852 * 0.04035 * 4 3 2 29 29 H 1.08007 * 119.95443 * 180.25181 * 9 7 5 30 30 H 0.96999 * 120.00388 * 356.09862 * 17 16 14 31 31 H 1.08002 * 119.99674 * 359.97438 * 23 22 12 32 32 H 1.08002 * 120.00284 * 180.23105 * 24 23 22 33 33 H 1.08000 * 120.00217 * 179.83904 * 25 24 23 34 34 H 1.08003 * 119.99624 * 179.97438 * 26 25 24 35 35 H 1.08005 * 119.99932 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 1.1954 -0.1866 5 6 4.6487 1.1897 -0.1862 6 9 5.3266 2.3444 -0.3661 7 6 5.3434 0.0006 -0.0003 8 9 6.6944 0.0041 -0.0008 9 6 4.6582 -1.1860 0.1908 10 6 3.2728 -1.1966 0.1874 11 8 2.6002 -2.3614 0.3702 12 6 3.3799 -3.5569 0.4391 13 1 4.2291 -3.4765 -0.2396 14 6 3.8793 -3.7504 1.8478 15 1 3.3032 -3.3762 2.6811 16 6 5.0718 -4.4049 2.0726 17 7 5.7908 -4.8293 1.0565 18 14 5.6661 -4.6892 3.8206 19 1 6.9643 -5.4095 3.7911 20 1 5.8404 -3.3817 4.5029 21 1 4.6659 -5.5026 4.5575 22 6 2.5289 -4.7353 0.0416 23 6 1.2079 -4.8009 0.4435 24 6 0.4262 -5.8800 0.0756 25 6 0.9677 -6.8975 -0.6875 26 6 2.2902 -6.8345 -1.0849 27 6 3.0709 -5.7536 -0.7202 28 1 2.7328 2.1212 -0.3307 29 1 5.2041 -2.1061 0.3387 30 1 5.4559 -4.7325 0.1513 31 1 0.7859 -4.0077 1.0428 32 1 -0.6069 -5.9293 0.3865 33 1 0.3578 -7.7419 -0.9727 34 1 2.7134 -7.6297 -1.6808 35 1 4.1040 -5.7042 -1.0312 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229838181.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:20 Heat of formation + Delta-G solvation = -49.795005 kcal Electronic energy + Delta-G solvation = -25214.855506 eV Core-core repulsion = 21200.334287 eV Total energy + Delta-G solvation = -4014.521220 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.32868 -48.39767 -40.12536 -38.63300 -37.05403 -36.01104 -33.79349 -31.11557 -31.07605 -30.31875 -29.38262 -26.80692 -24.11470 -23.80088 -22.61599 -21.89412 -20.71461 -19.29653 -18.29909 -17.60288 -17.27324 -16.58155 -16.21956 -16.13389 -15.49456 -14.88382 -14.81358 -14.60374 -14.20498 -14.05010 -13.98459 -13.91041 -13.60477 -13.50837 -13.21441 -12.84790 -12.55588 -12.41865 -12.21406 -12.18362 -11.76903 -11.50491 -11.08998 -11.02485 -10.76403 -10.57271 -10.36439 -10.12558 -9.33584 -8.97453 -8.85575 -8.35503 -8.12080 -7.88337 -6.83229 -4.64620 0.59467 1.15435 1.93956 1.97923 2.83701 2.88431 3.24403 3.26454 3.43979 3.50561 3.74157 3.80608 4.03933 4.18463 4.40828 4.45039 4.71420 4.89976 5.07924 5.26493 5.41921 5.43580 5.57579 5.61191 5.71443 5.77746 5.93439 5.98964 6.16032 6.17432 6.33759 6.54742 6.59659 6.68960 7.01158 7.03401 7.20396 7.35815 7.57261 7.58693 7.70398 8.08459 8.31094 9.05341 10.49980 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.010660 B = 0.005733 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.089332 B = 4882.870635 C = 6486.828215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C 0.276 3.724 3 C -0.074 4.074 4 C -0.043 4.043 5 C 0.008 3.992 6 F -0.132 7.132 7 C 0.140 3.860 8 F -0.120 7.120 9 C -0.206 4.206 10 C 0.236 3.764 11 O -0.298 6.298 12 C 0.220 3.780 13 H 0.054 0.946 14 C -0.614 4.614 15 H 0.069 0.931 16 C 0.037 3.963 17 N -0.885 5.885 18 Si 1.068 2.932 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.283 1.283 22 C -0.043 4.043 23 C -0.102 4.102 24 C -0.127 4.127 25 C -0.142 4.142 26 C -0.122 4.122 27 C -0.113 4.113 28 H 0.155 0.845 29 H 0.176 0.824 30 H 0.270 0.730 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.157 4.784 -3.561 6.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.039 4.039 3 C -0.078 4.078 4 C -0.064 4.064 5 C -0.012 4.012 6 F -0.110 7.110 7 C 0.119 3.881 8 F -0.099 7.099 9 C -0.225 4.225 10 C 0.184 3.816 11 O -0.209 6.209 12 C 0.167 3.833 13 H 0.071 0.929 14 C -0.650 4.650 15 H 0.087 0.913 16 C -0.171 4.171 17 N -0.519 5.519 18 Si 0.894 3.106 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.209 1.209 22 C -0.044 4.044 23 C -0.120 4.120 24 C -0.145 4.145 25 C -0.160 4.160 26 C -0.140 4.140 27 C -0.132 4.132 28 H 0.173 0.827 29 H 0.193 0.807 30 H 0.082 0.918 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.780 4.126 -2.665 5.644 hybrid contribution -0.219 0.509 -0.744 0.927 sum -2.999 4.635 -3.408 6.488 Atomic orbital electron populations 1.81175 1.11750 1.07316 1.09634 1.25001 0.91918 0.93598 0.93399 1.14977 0.85116 0.91871 1.15881 1.20611 0.91162 0.97646 0.96989 1.17044 0.89768 0.81258 1.13123 1.91507 1.79763 1.46089 1.93674 1.17637 0.77488 0.92943 1.00011 1.91554 1.27893 1.97139 1.93273 1.21468 0.93867 0.99503 1.07694 1.18582 0.89296 0.86288 0.87477 1.86051 1.38273 1.13659 1.82892 1.19505 0.88175 0.76814 0.98829 0.92876 1.22204 1.09475 1.42527 0.90809 0.91272 1.25958 0.92557 0.92376 1.06201 1.70932 1.38602 1.42392 0.99978 0.83530 0.76713 0.77173 0.73212 1.20234 1.20757 1.20907 1.20077 0.93791 0.96756 0.93756 1.20883 0.93784 0.97856 0.99510 1.21031 0.99355 0.94735 0.99412 1.20933 0.95603 0.98913 1.00524 1.20963 0.94222 0.98003 1.00823 1.20908 0.99667 0.94356 0.98242 0.82690 0.80655 0.91772 0.86477 0.86971 0.87053 0.86771 0.86243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.46 18.54 41.84 0.78 -6.68 16 2 C 0.28 4.46 14.87 -22.48 -0.33 4.13 16 3 C -0.07 -1.11 5.75 -106.65 -0.61 -1.72 16 4 C -0.04 -0.53 9.73 -39.12 -0.38 -0.91 16 5 C 0.01 0.12 7.29 -39.44 -0.29 -0.17 16 6 F -0.13 -1.82 17.17 2.25 0.04 -1.78 16 7 C 0.14 2.22 7.30 -39.27 -0.29 1.94 16 8 F -0.12 -1.99 17.17 2.25 0.04 -1.96 16 9 C -0.21 -3.61 8.66 -39.43 -0.34 -3.95 16 10 C 0.24 4.16 6.59 -38.74 -0.26 3.91 16 11 O -0.30 -6.02 8.51 -18.92 -0.16 -6.18 16 12 C 0.22 4.75 1.67 -29.04 -0.05 4.70 16 13 H 0.05 1.17 4.60 -51.93 -0.24 0.93 16 14 C -0.61 -14.63 7.69 -34.44 -0.26 -14.90 16 15 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 16 C 0.04 0.89 5.44 -17.82 -0.10 0.79 16 17 N -0.88 -22.27 13.62 55.43 0.75 -21.52 16 18 Si 1.07 22.44 29.90 -169.99 -5.08 17.36 16 19 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 20 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 22 C -0.04 -0.90 4.96 -104.63 -0.52 -1.42 16 23 C -0.10 -2.01 9.36 -39.58 -0.37 -2.38 16 24 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 25 C -0.14 -2.28 10.05 -39.58 -0.40 -2.68 16 26 C -0.12 -2.08 10.05 -39.58 -0.40 -2.48 16 27 C -0.11 -2.22 9.45 -39.58 -0.37 -2.59 16 28 H 0.16 1.44 8.06 -52.49 -0.42 1.01 16 29 H 0.18 3.51 5.65 -52.48 -0.30 3.21 16 30 H 0.27 6.58 5.11 -40.82 -0.21 6.37 16 31 H 0.12 2.33 7.75 -52.49 -0.41 1.92 16 32 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 35 H 0.12 2.33 6.82 -52.48 -0.36 1.97 16 LS Contribution 325.10 15.07 4.90 4.90 Total: -1.00 -25.72 325.10 -6.51 -32.23 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -2.41 Total: 3.94 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -5.37 Total: -20.32 kcal Atomic # 7 Polarization: -29.73 SS G_CDS: 1.53 Total: -28.20 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.16 Total: -6.18 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.08 Total: -3.73 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.08 Total: 17.36 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -25.72 -6.51 -32.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229838181.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.564 kcal (2) G-P(sol) polarization free energy of solvation -25.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds