Wall clock time and date at job start Tue Mar 31 2020 11:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39815 * 120.15708 * 171.11855 * 3 2 1 5 5 C 1.37887 * 119.89791 * 180.02562 * 4 3 2 6 6 F 1.35100 * 119.88494 * 180.02562 * 5 4 3 7 7 C 1.38971 * 120.22746 * 359.97438 * 5 4 3 8 8 F 1.35100 * 119.84384 * 180.02562 * 7 5 4 9 9 C 1.38344 * 120.31885 * 359.75323 * 7 5 4 10 10 C 1.38546 * 120.09731 * 0.50738 * 9 7 5 11 11 O 1.35739 * 120.11512 * 179.76982 * 10 9 7 12 12 C 1.42903 * 117.00178 * 354.47497 * 11 10 9 13 13 H 1.08998 * 109.47163 * 324.57320 * 12 11 10 14 14 C 1.50700 * 109.46793 * 84.57111 * 12 11 10 15 15 H 1.08000 * 120.00173 * 29.54290 * 14 12 11 16 16 C 1.37875 * 119.99653 * 209.54723 * 14 12 11 17 17 N 1.31509 * 120.00383 * 1.79712 * 16 14 12 18 18 Si 1.86805 * 119.99888 * 181.80356 * 16 14 12 19 19 H 1.48496 * 109.47442 * 179.97438 * 18 16 14 20 20 H 1.48503 * 109.46763 * 299.99627 * 18 16 14 21 21 H 1.48497 * 109.47512 * 59.99577 * 18 16 14 22 22 C 1.50696 * 109.47290 * 204.57112 * 12 11 10 23 23 C 1.38232 * 120.00311 * 320.99281 * 22 12 11 24 24 C 1.38236 * 120.00335 * 179.81458 * 23 22 12 25 25 C 1.38237 * 119.99925 * 0.39029 * 24 23 22 26 26 C 1.38233 * 119.99622 * 359.86316 * 25 24 23 27 27 C 1.38236 * 120.00390 * 359.95390 * 26 25 24 28 28 H 1.08001 * 120.04852 * 0.04035 * 4 3 2 29 29 H 1.08007 * 119.95443 * 180.25181 * 9 7 5 30 30 H 0.96999 * 120.00388 * 356.09862 * 17 16 14 31 31 H 1.08002 * 119.99674 * 359.97438 * 23 22 12 32 32 H 1.08002 * 120.00284 * 180.23105 * 24 23 22 33 33 H 1.08000 * 120.00217 * 179.83904 * 25 24 23 34 34 H 1.08003 * 119.99624 * 179.97438 * 26 25 24 35 35 H 1.08005 * 119.99932 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 1.1954 -0.1866 5 6 4.6487 1.1897 -0.1862 6 9 5.3266 2.3444 -0.3661 7 6 5.3434 0.0006 -0.0003 8 9 6.6944 0.0041 -0.0008 9 6 4.6582 -1.1860 0.1908 10 6 3.2728 -1.1966 0.1874 11 8 2.6002 -2.3614 0.3702 12 6 3.3799 -3.5569 0.4391 13 1 4.2291 -3.4765 -0.2396 14 6 3.8793 -3.7504 1.8478 15 1 3.3032 -3.3762 2.6811 16 6 5.0718 -4.4049 2.0726 17 7 5.7908 -4.8293 1.0565 18 14 5.6661 -4.6892 3.8206 19 1 6.9643 -5.4095 3.7911 20 1 5.8404 -3.3817 4.5029 21 1 4.6659 -5.5026 4.5575 22 6 2.5289 -4.7353 0.0416 23 6 1.2079 -4.8009 0.4435 24 6 0.4262 -5.8800 0.0756 25 6 0.9677 -6.8975 -0.6875 26 6 2.2902 -6.8345 -1.0849 27 6 3.0709 -5.7536 -0.7202 28 1 2.7328 2.1212 -0.3307 29 1 5.2041 -2.1061 0.3387 30 1 5.4559 -4.7325 0.1513 31 1 0.7859 -4.0077 1.0428 32 1 -0.6069 -5.9293 0.3865 33 1 0.3578 -7.7419 -0.9727 34 1 2.7134 -7.6297 -1.6808 35 1 4.1040 -5.7042 -1.0312 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229838181.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:19 Heat of formation + Delta-G solvation = -59.917607 kcal Electronic energy + Delta-G solvation = -25215.294455 eV Core-core repulsion = 21200.334287 eV Total energy + Delta-G solvation = -4014.960169 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.58865 -49.62947 -41.54668 -40.03147 -38.45733 -37.35909 -35.52391 -32.63044 -32.37433 -31.73383 -30.69822 -28.45485 -25.64921 -25.22986 -23.98031 -23.29986 -22.18364 -20.59816 -19.82754 -19.05589 -18.72351 -17.91953 -17.51849 -17.45286 -16.86281 -16.36420 -16.06117 -16.05136 -15.69012 -15.57511 -15.42097 -15.18990 -14.96452 -14.84969 -14.60003 -14.26515 -14.05399 -13.89077 -13.71154 -13.54270 -13.24884 -12.86648 -12.65797 -12.46419 -12.22864 -12.02735 -11.99079 -11.67976 -10.98608 -10.69215 -10.25796 -9.77739 -9.54621 -9.31883 -8.71742 -6.53827 -0.68428 -0.09239 0.51661 0.55026 1.51503 1.52924 1.55973 1.57324 1.76375 2.08496 2.44613 2.46180 2.52233 2.76979 2.94545 3.09005 3.16597 3.51400 3.74892 3.99137 4.01780 4.14298 4.23069 4.31516 4.35127 4.44444 4.55377 4.63539 4.75502 4.76824 4.96600 5.13190 5.19128 5.39395 5.56392 5.62438 5.62717 5.79303 5.88255 6.17090 6.30200 6.40177 6.43550 7.21896 8.61525 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.010660 B = 0.005733 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.089332 B = 4882.870635 C = 6486.828215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.290 3.710 3 C -0.065 4.065 4 C -0.009 4.009 5 C 0.025 3.975 6 F -0.124 7.124 7 C 0.138 3.862 8 F -0.127 7.127 9 C -0.218 4.218 10 C 0.215 3.785 11 O -0.312 6.312 12 C 0.230 3.770 13 H 0.040 0.960 14 C -0.617 4.617 15 H 0.051 0.949 16 C 0.001 3.999 17 N -0.907 5.907 18 Si 1.100 2.900 19 H -0.280 1.280 20 H -0.270 1.270 21 H -0.277 1.277 22 C -0.072 4.072 23 C -0.122 4.122 24 C -0.125 4.125 25 C -0.132 4.132 26 C -0.121 4.121 27 C -0.133 4.133 28 H 0.201 0.799 29 H 0.146 0.854 30 H 0.266 0.734 31 H 0.105 0.895 32 H 0.142 0.858 33 H 0.153 0.847 34 H 0.144 0.856 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.474 5.340 -3.947 7.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.025 4.025 3 C -0.069 4.069 4 C -0.030 4.030 5 C 0.004 3.996 6 F -0.102 7.102 7 C 0.117 3.883 8 F -0.105 7.105 9 C -0.238 4.238 10 C 0.163 3.837 11 O -0.224 6.224 12 C 0.176 3.824 13 H 0.058 0.942 14 C -0.654 4.654 15 H 0.070 0.930 16 C -0.202 4.202 17 N -0.543 5.543 18 Si 0.923 3.077 19 H -0.205 1.205 20 H -0.195 1.195 21 H -0.202 1.202 22 C -0.072 4.072 23 C -0.140 4.140 24 C -0.143 4.143 25 C -0.150 4.150 26 C -0.139 4.139 27 C -0.151 4.151 28 H 0.218 0.782 29 H 0.163 0.837 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.160 0.840 33 H 0.171 0.829 34 H 0.162 0.838 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.105 4.704 -3.059 6.953 hybrid contribution 0.147 0.413 -0.702 0.828 sum -3.958 5.118 -3.762 7.484 Atomic orbital electron populations 1.81190 1.12438 1.08065 1.10462 1.25018 0.91894 0.92881 0.92693 1.14982 0.84609 0.91699 1.15634 1.20961 0.90367 0.98086 0.93563 1.16949 0.90061 0.80550 1.12028 1.91540 1.79755 1.45448 1.93497 1.17700 0.77224 0.93248 1.00112 1.91537 1.28428 1.97182 1.93339 1.21136 0.93887 0.99180 1.09578 1.18821 0.89512 0.86347 0.89022 1.85995 1.38310 1.14105 1.83957 1.19246 0.88205 0.77773 0.97225 0.94217 1.22267 1.09344 1.42173 0.91604 0.93034 1.26869 0.92931 0.92178 1.08177 1.70972 1.39165 1.44027 1.00146 0.83116 0.76288 0.77624 0.70715 1.20479 1.19533 1.20238 1.20149 0.94634 0.96909 0.95518 1.20925 0.93770 0.98957 1.00360 1.21397 1.00465 0.93794 0.98656 1.21402 0.95398 0.99421 0.98747 1.21344 0.94611 0.97589 1.00319 1.20991 0.99652 0.95382 0.99101 0.78178 0.83654 0.92244 0.87702 0.84003 0.82924 0.83822 0.87447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -15.22 18.54 19.00 0.35 -14.87 16 2 C 0.29 9.00 14.87 88.33 1.31 10.32 16 3 C -0.06 -1.86 5.75 -21.18 -0.12 -1.98 16 4 C -0.01 -0.20 9.73 22.57 0.22 0.02 16 5 C 0.02 0.62 7.29 22.36 0.16 0.79 16 6 F -0.12 -3.03 17.17 44.97 0.77 -2.26 16 7 C 0.14 4.35 7.30 22.47 0.16 4.52 16 8 F -0.13 -4.22 17.17 44.97 0.77 -3.44 16 9 C -0.22 -7.97 8.66 22.37 0.19 -7.77 16 10 C 0.21 7.74 6.59 22.82 0.15 7.89 16 11 O -0.31 -13.19 8.51 -90.63 -0.77 -13.96 16 12 C 0.23 10.48 1.67 29.10 0.05 10.52 16 13 H 0.04 1.90 4.60 -2.39 -0.01 1.89 16 14 C -0.62 -30.90 7.69 25.60 0.20 -30.70 16 15 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 16 C 0.00 0.08 5.44 84.66 0.46 0.54 16 17 N -0.91 -47.76 13.62 21.45 0.29 -47.47 16 18 Si 1.10 46.25 29.90 68.60 2.05 48.31 16 19 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 20 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 21 H -0.28 -11.24 7.11 99.48 0.71 -10.54 16 22 C -0.07 -3.10 4.96 -19.87 -0.10 -3.20 16 23 C -0.12 -4.87 9.36 22.27 0.21 -4.66 16 24 C -0.13 -4.06 10.05 22.27 0.22 -3.83 16 25 C -0.13 -3.86 10.05 22.27 0.22 -3.64 16 26 C -0.12 -3.92 10.05 22.27 0.22 -3.70 16 27 C -0.13 -5.32 9.45 22.27 0.21 -5.11 16 28 H 0.20 2.62 8.06 -2.91 -0.02 2.60 16 29 H 0.15 6.29 5.65 -2.91 -0.02 6.28 16 30 H 0.27 13.78 5.11 -92.71 -0.47 13.30 16 31 H 0.10 4.32 7.75 -2.91 -0.02 4.30 16 32 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 33 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 34 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 35 H 0.11 4.44 6.82 -2.91 -0.02 4.43 16 Total: -1.00 -57.98 325.10 8.71 -49.27 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 1.46 Total: 14.41 kcal Atomic # 6 Polarization: -33.77 SS G_CDS: 3.78 Total: -29.99 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: 0.64 Total: -62.33 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.77 Total: -13.96 kcal Atomic # 9 Polarization: -7.25 SS G_CDS: 1.54 Total: -5.70 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.05 Total: 48.31 kcal Total: -57.98 8.71 -49.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229838181.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.643 kcal (2) G-P(sol) polarization free energy of solvation -57.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds