Wall clock time and date at job start Tue Mar 31 2020 10:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45202 * 109.46981 * 2 1 4 4 C 1.34221 * 117.00487 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99770 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00503 * 180.02562 * 4 3 2 7 7 C 1.53007 * 109.47263 * 172.79636 * 6 4 3 8 8 H 1.08995 * 109.47201 * 53.36444 * 7 6 4 9 9 C 1.50700 * 109.47057 * 173.36122 * 7 6 4 10 10 H 1.07998 * 120.00155 * 239.99847 * 9 7 6 11 11 C 1.37884 * 119.99861 * 59.72303 * 9 7 6 12 12 N 1.31513 * 119.99966 * 0.27721 * 11 9 7 13 13 Si 1.86798 * 120.00086 * 180.27449 * 11 9 7 14 14 H 1.48497 * 109.47169 * 89.99869 * 13 11 9 15 15 H 1.48493 * 109.47042 * 210.00370 * 13 11 9 16 16 H 1.48502 * 109.46853 * 330.00171 * 13 11 9 17 17 O 1.42894 * 109.46994 * 293.36187 * 7 6 4 18 18 C 1.36054 * 117.00127 * 166.68397 * 17 7 6 19 19 C 1.39964 * 120.88023 * 96.73059 * 18 17 7 20 20 N 1.38807 * 120.54706 * 359.97438 * 19 18 17 21 21 N 1.32891 * 118.91092 * 180.02562 * 19 18 17 22 22 C 1.31829 * 120.76683 * 0.02562 * 21 19 18 23 23 N 1.31707 * 121.95151 * 0.02562 * 22 21 19 24 24 C 1.32697 * 121.02210 * 359.65726 * 23 22 21 25 25 Cl 1.73604 * 120.44600 * 180.31696 * 24 23 22 26 26 H 1.09002 * 109.47199 * 299.99549 * 1 2 3 27 27 H 1.08990 * 109.47425 * 60.00248 * 1 2 3 28 28 H 1.09007 * 109.46803 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47629 * 240.00131 * 2 1 3 30 30 H 1.09003 * 109.47229 * 119.99813 * 2 1 3 31 31 H 1.08997 * 109.47196 * 52.79341 * 6 4 3 32 32 H 1.08997 * 109.47120 * 292.79743 * 6 4 3 33 33 H 0.96996 * 120.00006 * 179.97438 * 12 11 9 34 34 H 0.97004 * 119.99856 * 359.97438 * 20 19 18 35 35 H 0.96998 * 120.00240 * 179.97438 * 20 19 18 36 36 H 1.08001 * 119.02489 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9205 2.9376 0.0012 7 6 5.4379 2.8618 0.1826 8 1 5.8605 2.1928 -0.5670 9 6 6.0324 4.2371 0.0206 10 1 6.7605 4.4228 -0.7551 11 6 5.6425 5.2598 0.8592 12 7 4.7559 5.0338 1.8039 13 14 6.3737 6.9664 0.6536 14 1 5.5372 7.7532 -0.2879 15 1 6.4127 7.6502 1.9712 16 1 7.7525 6.8524 0.1140 17 8 5.7373 2.3642 1.4882 18 6 7.0190 1.9715 1.7207 19 6 7.9347 2.8343 2.3338 20 7 7.5520 4.1122 2.7176 21 7 9.1769 2.4104 2.5417 22 6 9.5456 1.1981 2.1777 23 7 8.7109 0.3605 1.5976 24 6 7.4515 0.7045 1.3603 25 17 6.3619 -0.4144 0.6022 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.4849 3.5106 0.8196 32 1 3.6918 3.4258 -0.9461 33 1 4.4819 5.7531 2.3940 34 1 6.6434 4.4139 2.5610 35 1 8.1930 4.7035 3.1422 36 1 10.5624 0.8828 2.3597 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233627359.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:59 Heat of formation + Delta-G solvation = -76.591327 kcal Electronic energy + Delta-G solvation = -25212.928980 eV Core-core repulsion = 21338.193201 eV Total energy + Delta-G solvation = -3874.735778 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.29767 -39.66853 -37.35186 -35.95160 -35.82148 -34.47325 -33.48036 -31.71021 -31.45032 -30.26432 -28.63212 -26.39080 -23.71324 -23.02977 -22.81547 -21.73761 -19.89956 -17.89825 -17.63886 -17.34095 -16.90880 -16.10307 -15.78837 -15.46094 -14.94766 -14.82962 -14.66870 -14.36532 -13.82058 -13.41721 -13.26479 -13.06324 -12.67466 -12.34151 -11.99108 -11.82321 -11.57601 -11.37956 -11.27608 -11.17126 -10.92656 -10.78714 -10.58246 -10.53556 -10.20421 -10.03868 -9.60530 -9.50485 -9.15992 -8.97214 -8.77640 -8.15661 -7.30110 -6.47220 -4.67259 1.54015 1.95051 2.55372 2.99526 3.09744 3.10241 3.14782 3.36676 4.01365 4.14751 4.29082 4.72567 4.84275 4.93517 5.11190 5.17886 5.37794 5.40597 5.51555 5.75220 5.92308 5.95762 6.05781 6.10076 6.32764 6.53645 6.63043 6.88033 7.05603 7.24167 7.33420 7.46679 7.73629 7.96169 8.31280 8.42238 8.61540 8.74803 8.91809 9.08530 10.49263 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.011090 B = 0.007244 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.138549 B = 3864.345191 C = 5986.148986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.368 6.368 4 C 0.452 3.548 5 O -0.500 6.500 6 C -0.094 4.094 7 C 0.227 3.773 8 H 0.028 0.972 9 C -0.547 4.547 10 H 0.066 0.934 11 C 0.077 3.923 12 N -0.864 5.864 13 Si 0.883 3.117 14 H -0.273 1.273 15 H -0.278 1.278 16 H -0.268 1.268 17 O -0.303 6.303 18 C 0.004 3.996 19 C 0.445 3.555 20 N -0.814 5.814 21 N -0.586 5.586 22 C 0.323 3.677 23 N -0.562 5.562 24 C 0.188 3.812 25 Cl 0.004 6.996 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.136 0.864 32 H 0.101 0.899 33 H 0.271 0.729 34 H 0.435 0.565 35 H 0.391 0.609 36 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.479 -4.056 -0.386 4.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.286 6.286 4 C 0.296 3.704 5 O -0.387 6.387 6 C -0.132 4.132 7 C 0.173 3.827 8 H 0.046 0.954 9 C -0.585 4.585 10 H 0.084 0.916 11 C -0.127 4.127 12 N -0.503 5.503 13 Si 0.708 3.292 14 H -0.198 1.198 15 H -0.204 1.204 16 H -0.193 1.193 17 O -0.217 6.217 18 C -0.053 4.053 19 C 0.196 3.804 20 N -0.365 5.365 21 N -0.315 5.315 22 C 0.033 3.967 23 N -0.286 5.286 24 C 0.022 3.978 25 Cl 0.033 6.967 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.154 0.846 32 H 0.119 0.881 33 H 0.082 0.918 34 H 0.280 0.720 35 H 0.218 0.782 36 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -1.902 -4.649 -0.082 5.023 hybrid contribution -0.421 1.336 -0.352 1.444 sum -2.323 -3.313 -0.434 4.069 Atomic orbital electron populations 1.21773 0.93492 1.02230 1.03239 1.22809 0.94679 0.81889 1.01933 1.86562 1.26375 1.30825 1.84883 1.24818 0.79499 0.94405 0.71698 1.90667 1.59616 1.43407 1.44965 1.21633 0.96873 0.88637 1.06050 1.19768 0.89836 0.92719 0.80335 0.95426 1.21721 1.25248 0.94250 1.17242 0.91573 1.25127 0.94121 0.99010 0.94406 1.69923 1.29335 1.33211 1.17822 0.86726 0.80349 0.83652 0.78439 1.19802 1.20369 1.19278 1.86186 1.19064 1.81106 1.35369 1.19169 0.89452 0.91474 1.05242 1.18958 0.87183 0.86715 0.87584 1.43123 1.18514 1.10956 1.63913 1.67896 1.16642 1.19165 1.27816 1.24213 0.98534 0.84152 0.89821 1.67710 1.02496 1.38153 1.20250 1.22593 0.89944 0.90141 0.95141 1.98448 1.58192 1.61548 1.78525 0.91653 0.91803 0.90951 0.92025 0.91773 0.84591 0.88128 0.91827 0.72012 0.78155 0.79044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.29 37.16 0.38 -1.24 16 2 C 0.06 0.88 6.19 37.16 0.23 1.11 16 3 O -0.37 -6.58 10.22 -39.24 -0.40 -6.98 16 4 C 0.45 9.10 7.80 36.00 0.28 9.38 16 5 O -0.50 -10.68 11.64 -22.44 -0.26 -10.94 16 6 C -0.09 -1.99 5.18 -27.88 -0.14 -2.13 16 7 C 0.23 5.27 1.83 -27.88 -0.05 5.22 16 8 H 0.03 0.67 7.52 -51.93 -0.39 0.28 16 9 C -0.55 -13.06 7.86 -34.44 -0.27 -13.33 16 10 H 0.07 1.63 7.81 -52.49 -0.41 1.22 16 11 C 0.08 1.75 3.04 -17.82 -0.05 1.70 16 12 N -0.86 -19.88 9.59 55.43 0.53 -19.34 16 13 Si 0.88 18.12 29.53 -169.99 -5.02 13.10 16 14 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 15 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 16 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 17 O -0.30 -7.25 7.63 -27.30 -0.21 -7.46 16 18 C 0.00 0.08 5.45 -38.79 -0.21 -0.13 16 19 C 0.45 9.65 7.64 -154.48 -1.18 8.47 16 20 N -0.81 -16.70 8.48 31.34 0.27 -16.44 16 21 N -0.59 -11.55 10.47 -13.68 -0.14 -11.69 16 22 C 0.32 5.80 12.28 -92.20 -1.13 4.67 16 23 N -0.56 -11.30 10.43 -11.67 -0.12 -11.42 16 24 C 0.19 4.11 7.34 -17.03 -0.12 3.99 16 25 Cl 0.00 0.09 24.93 -51.86 -1.29 -1.21 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 30 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 31 H 0.14 3.07 6.27 -51.93 -0.33 2.74 16 32 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 33 H 0.27 5.95 8.31 -40.82 -0.34 5.61 16 34 H 0.44 9.55 3.89 -40.82 -0.16 9.39 16 35 H 0.39 6.93 8.95 -40.82 -0.37 6.57 16 36 H 0.19 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 318.77 15.07 4.80 4.80 Total: -1.00 -26.55 318.77 -7.87 -34.41 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -3.74 Total: 15.45 kcal Atomic # 6 Polarization: 19.98 SS G_CDS: -2.28 Total: 17.71 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: 0.53 Total: -58.89 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.87 Total: -25.38 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.02 Total: 13.10 kcal Atomic # 17 Polarization: 0.09 SS G_CDS: -1.29 Total: -1.21 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -26.55 -7.87 -34.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233627359.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.180 kcal (2) G-P(sol) polarization free energy of solvation -26.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds