Wall clock time and date at job start Tue Mar 31 2020 10:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45202 * 109.46981 * 2 1 4 4 C 1.34221 * 117.00487 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99770 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00503 * 180.02562 * 4 3 2 7 7 C 1.53007 * 109.47263 * 172.79636 * 6 4 3 8 8 H 1.08995 * 109.47201 * 53.36444 * 7 6 4 9 9 C 1.50700 * 109.47057 * 173.36122 * 7 6 4 10 10 H 1.07998 * 120.00155 * 239.99847 * 9 7 6 11 11 C 1.37884 * 119.99861 * 59.72303 * 9 7 6 12 12 N 1.31513 * 119.99966 * 0.27721 * 11 9 7 13 13 Si 1.86798 * 120.00086 * 180.27449 * 11 9 7 14 14 H 1.48497 * 109.47169 * 89.99869 * 13 11 9 15 15 H 1.48493 * 109.47042 * 210.00370 * 13 11 9 16 16 H 1.48502 * 109.46853 * 330.00171 * 13 11 9 17 17 O 1.42894 * 109.46994 * 293.36187 * 7 6 4 18 18 C 1.36054 * 117.00127 * 166.68397 * 17 7 6 19 19 C 1.39964 * 120.88023 * 96.73059 * 18 17 7 20 20 N 1.38807 * 120.54706 * 359.97438 * 19 18 17 21 21 N 1.32891 * 118.91092 * 180.02562 * 19 18 17 22 22 C 1.31829 * 120.76683 * 0.02562 * 21 19 18 23 23 N 1.31707 * 121.95151 * 0.02562 * 22 21 19 24 24 C 1.32697 * 121.02210 * 359.65726 * 23 22 21 25 25 Cl 1.73604 * 120.44600 * 180.31696 * 24 23 22 26 26 H 1.09002 * 109.47199 * 299.99549 * 1 2 3 27 27 H 1.08990 * 109.47425 * 60.00248 * 1 2 3 28 28 H 1.09007 * 109.46803 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47629 * 240.00131 * 2 1 3 30 30 H 1.09003 * 109.47229 * 119.99813 * 2 1 3 31 31 H 1.08997 * 109.47196 * 52.79341 * 6 4 3 32 32 H 1.08997 * 109.47120 * 292.79743 * 6 4 3 33 33 H 0.96996 * 120.00006 * 179.97438 * 12 11 9 34 34 H 0.97004 * 119.99856 * 359.97438 * 20 19 18 35 35 H 0.96998 * 120.00240 * 179.97438 * 20 19 18 36 36 H 1.08001 * 119.02489 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9205 2.9376 0.0012 7 6 5.4379 2.8618 0.1826 8 1 5.8605 2.1928 -0.5670 9 6 6.0324 4.2371 0.0206 10 1 6.7605 4.4228 -0.7551 11 6 5.6425 5.2598 0.8592 12 7 4.7559 5.0338 1.8039 13 14 6.3737 6.9664 0.6536 14 1 5.5372 7.7532 -0.2879 15 1 6.4127 7.6502 1.9712 16 1 7.7525 6.8524 0.1140 17 8 5.7373 2.3642 1.4882 18 6 7.0190 1.9715 1.7207 19 6 7.9347 2.8343 2.3338 20 7 7.5520 4.1122 2.7176 21 7 9.1769 2.4104 2.5417 22 6 9.5456 1.1981 2.1777 23 7 8.7109 0.3605 1.5976 24 6 7.4515 0.7045 1.3603 25 17 6.3619 -0.4144 0.6022 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.4849 3.5106 0.8196 32 1 3.6918 3.4258 -0.9461 33 1 4.4819 5.7531 2.3940 34 1 6.6434 4.4139 2.5610 35 1 8.1930 4.7035 3.1422 36 1 10.5624 0.8828 2.3597 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233627359.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:58 Heat of formation + Delta-G solvation = -91.187011 kcal Electronic energy + Delta-G solvation = -25213.561896 eV Core-core repulsion = 21338.193201 eV Total energy + Delta-G solvation = -3875.368695 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.89842 -41.19672 -39.01899 -37.59350 -37.32570 -36.09970 -35.23311 -33.27416 -32.69395 -31.85353 -30.25706 -28.12212 -25.28204 -24.50941 -24.29686 -23.22499 -21.47724 -19.52048 -19.37314 -18.92230 -18.47236 -17.63500 -17.29911 -17.13993 -16.58950 -16.47204 -16.28014 -15.94557 -15.17461 -14.91869 -14.83435 -14.63930 -13.96156 -13.65072 -13.44929 -13.42378 -13.11683 -12.92102 -12.82166 -12.52707 -12.48995 -12.37235 -12.20512 -12.17786 -11.81554 -11.42373 -11.31579 -11.13584 -10.85889 -10.70982 -10.39997 -9.82916 -8.95597 -8.23010 -6.49501 -0.07949 0.32765 0.91564 1.36284 1.44000 1.49578 1.51038 1.96099 2.31857 2.55870 2.67079 3.00347 3.25635 3.41850 3.76644 4.05737 4.06478 4.18043 4.22721 4.40293 4.42329 4.61687 4.73512 4.91423 4.96554 5.05245 5.18750 5.30775 5.41441 5.56510 5.69613 5.77920 5.95669 6.37225 6.50324 6.82124 6.98889 7.06633 7.29317 7.32353 8.73834 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.011090 B = 0.007244 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.138549 B = 3864.345191 C = 5986.148986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.053 3.947 3 O -0.370 6.370 4 C 0.455 3.545 5 O -0.515 6.515 6 C -0.089 4.089 7 C 0.231 3.769 8 H 0.007 0.993 9 C -0.567 4.567 10 H 0.049 0.951 11 C 0.062 3.938 12 N -0.873 5.873 13 Si 0.927 3.073 14 H -0.272 1.272 15 H -0.266 1.266 16 H -0.279 1.279 17 O -0.313 6.313 18 C -0.031 4.031 19 C 0.436 3.564 20 N -0.813 5.813 21 N -0.585 5.585 22 C 0.331 3.669 23 N -0.568 5.568 24 C 0.183 3.817 25 Cl 0.006 6.994 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.276 0.724 34 H 0.430 0.570 35 H 0.403 0.597 36 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.373 -4.041 0.006 4.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.021 4.021 3 O -0.288 6.288 4 C 0.299 3.701 5 O -0.403 6.403 6 C -0.127 4.127 7 C 0.177 3.823 8 H 0.025 0.975 9 C -0.604 4.604 10 H 0.067 0.933 11 C -0.141 4.141 12 N -0.511 5.511 13 Si 0.752 3.248 14 H -0.197 1.197 15 H -0.190 1.190 16 H -0.204 1.204 17 O -0.228 6.228 18 C -0.088 4.088 19 C 0.186 3.814 20 N -0.364 5.364 21 N -0.314 5.314 22 C 0.043 3.957 23 N -0.293 5.293 24 C 0.016 3.984 25 Cl 0.034 6.966 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.119 0.881 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.141 0.859 32 H 0.129 0.871 33 H 0.086 0.914 34 H 0.273 0.727 35 H 0.232 0.768 36 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -1.800 -4.629 0.328 4.978 hybrid contribution -0.426 1.252 -0.461 1.400 sum -2.226 -3.377 -0.132 4.047 Atomic orbital electron populations 1.21793 0.90386 1.04191 1.03541 1.23169 0.97084 0.79999 1.01831 1.86535 1.24830 1.33121 1.84346 1.24530 0.80288 0.93768 0.71507 1.90653 1.60222 1.43707 1.45743 1.21474 0.95754 0.89409 1.06021 1.19665 0.90782 0.91922 0.79898 0.97461 1.21673 1.25875 0.95155 1.17720 0.93261 1.25422 0.94055 1.00777 0.93829 1.69973 1.29338 1.34025 1.17775 0.86051 0.79061 0.80913 0.78780 1.19699 1.19043 1.20395 1.86168 1.19885 1.81285 1.35424 1.19440 0.89721 0.92417 1.07213 1.19131 0.87718 0.86965 0.87537 1.43086 1.18531 1.10960 1.63774 1.68026 1.15482 1.19880 1.27967 1.25283 0.99936 0.83108 0.87420 1.67829 1.01902 1.38622 1.20931 1.22756 0.90698 0.90020 0.94903 1.98440 1.58359 1.61314 1.78459 0.91647 0.91183 0.88125 0.91691 0.92396 0.85897 0.87081 0.91357 0.72733 0.76779 0.74068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 10.29 71.98 0.74 -2.04 16 2 C 0.05 1.47 6.19 71.98 0.45 1.92 16 3 O -0.37 -13.10 10.22 -51.33 -0.52 -13.63 16 4 C 0.45 18.49 7.80 71.23 0.56 19.04 16 5 O -0.51 -22.28 11.64 25.47 0.30 -21.98 16 6 C -0.09 -3.81 5.18 29.85 0.15 -3.65 16 7 C 0.23 10.96 1.83 29.85 0.05 11.01 16 8 H 0.01 0.37 7.52 -2.39 -0.02 0.35 16 9 C -0.57 -27.45 7.86 25.60 0.20 -27.25 16 10 H 0.05 2.49 7.81 -2.91 -0.02 2.47 16 11 C 0.06 2.83 3.04 84.66 0.26 3.09 16 12 N -0.87 -39.90 9.59 21.45 0.21 -39.69 16 13 Si 0.93 36.58 29.53 68.60 2.03 38.61 16 14 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 15 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 16 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 17 O -0.31 -15.22 7.63 -87.10 -0.66 -15.88 16 18 C -0.03 -1.44 5.45 22.78 0.12 -1.32 16 19 C 0.44 18.68 7.64 133.19 1.02 19.70 16 20 N -0.81 -32.88 8.48 -54.76 -0.46 -33.34 16 21 N -0.58 -22.04 10.47 -197.20 -2.06 -24.10 16 22 C 0.33 11.11 12.28 180.90 2.22 13.33 16 23 N -0.57 -22.09 10.43 -190.83 -1.99 -24.08 16 24 C 0.18 7.97 7.34 84.66 0.62 8.59 16 25 Cl 0.01 0.23 24.93 -2.72 -0.07 0.16 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.06 1.76 8.13 -2.39 -0.02 1.74 16 30 H 0.06 1.68 8.13 -2.39 -0.02 1.66 16 31 H 0.12 5.62 6.27 -2.39 -0.01 5.61 16 32 H 0.11 4.39 8.14 -2.39 -0.02 4.37 16 33 H 0.28 11.89 8.31 -92.71 -0.77 11.12 16 34 H 0.43 18.71 3.89 -92.71 -0.36 18.35 16 35 H 0.40 13.87 8.95 -92.71 -0.83 13.03 16 36 H 0.24 5.38 8.06 -2.91 -0.02 5.36 16 Total: -1.00 -56.50 318.77 3.11 -53.39 By element: Atomic # 1 Polarization: 38.16 SS G_CDS: -0.04 Total: 38.12 kcal Atomic # 6 Polarization: 36.03 SS G_CDS: 6.39 Total: 42.42 kcal Atomic # 7 Polarization: -116.90 SS G_CDS: -4.31 Total: -121.22 kcal Atomic # 8 Polarization: -50.60 SS G_CDS: -0.89 Total: -51.49 kcal Atomic # 14 Polarization: 36.58 SS G_CDS: 2.03 Total: 38.61 kcal Atomic # 17 Polarization: 0.23 SS G_CDS: -0.07 Total: 0.16 kcal Total: -56.50 3.11 -53.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233627359.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.801 kcal (2) G-P(sol) polarization free energy of solvation -56.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds