Wall clock time and date at job start Tue Mar 31 2020 11:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35979 * 116.99891 * 2 1 4 4 C 1.38771 * 120.02994 * 270.29479 * 3 2 1 5 5 F 1.35097 * 120.06834 * 0.02562 * 4 3 2 6 6 C 1.38774 * 119.87166 * 180.20836 * 4 3 2 7 7 O 1.35974 * 120.02425 * 179.76945 * 6 4 3 8 8 C 1.42896 * 116.99785 * 185.54412 * 7 6 4 9 9 C 1.53510 * 114.17149 * 156.73983 * 8 7 6 10 10 N 1.47481 * 87.93151 * 87.61921 * 9 8 7 11 11 C 1.46904 * 110.99942 * 138.70719 * 10 9 8 12 12 C 1.50701 * 109.47064 * 169.99845 * 11 10 9 13 13 H 1.08000 * 120.00125 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99975 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99493 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 119.99972 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47141 * 179.97438 * 16 14 12 18 18 H 1.48495 * 109.47314 * 299.99806 * 16 14 12 19 19 H 1.48506 * 109.47189 * 60.00016 * 16 14 12 20 20 C 1.47481 * 87.83838 * 27.01093 * 10 9 8 21 21 C 1.38722 * 119.94859 * 359.49521 * 6 4 3 22 22 C 1.38203 * 120.07837 * 0.25216 * 21 6 4 23 23 C 1.38285 * 120.12349 * 359.97438 * 22 21 6 24 24 Cl 1.73599 * 119.97630 * 180.02562 * 23 22 21 25 25 H 1.09000 * 109.46621 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47196 * 300.00408 * 1 2 3 27 27 H 1.08993 * 109.46816 * 60.00366 * 1 2 3 28 28 H 1.09000 * 113.25956 * 23.78042 * 8 7 6 29 29 H 1.08999 * 113.47560 * 332.85125 * 9 8 7 30 30 H 1.09001 * 113.53315 * 202.39377 * 9 8 7 31 31 H 1.08999 * 109.47189 * 49.99918 * 11 10 9 32 32 H 1.08999 * 109.46963 * 289.99630 * 11 10 9 33 33 H 0.97002 * 119.99389 * 180.02562 * 15 14 12 34 34 H 1.09001 * 113.47090 * 87.75535 * 20 10 9 35 35 H 1.08993 * 113.47637 * 218.22503 * 20 10 9 36 36 H 1.08002 * 119.96118 * 180.27753 * 21 6 4 37 37 H 1.07999 * 119.93330 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 2.3562 1.8332 -1.2014 5 9 2.0446 1.2361 -2.3725 6 6 2.9901 3.0677 -1.1976 7 8 3.2993 3.6774 -2.3730 8 6 4.0583 4.8857 -2.2970 9 6 4.8408 5.2179 -3.5752 10 7 3.6370 5.9132 -4.0676 11 6 3.9926 7.1717 -4.7367 12 6 2.7797 7.7289 -5.4363 13 1 1.8388 7.2007 -5.3889 14 6 2.8711 8.9130 -6.1368 15 7 4.0169 9.5558 -6.1948 16 14 1.3674 9.6040 -7.0033 17 1 1.7266 10.8767 -7.6787 18 1 0.8847 8.6269 -8.0119 19 1 0.2954 9.8580 -6.0075 20 6 3.2659 6.1495 -2.6600 21 6 3.3029 3.6818 0.0063 22 6 2.9888 3.0633 1.2016 23 6 2.3613 1.8310 1.2014 24 17 1.9678 1.0578 2.7051 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 4.6431 4.9698 -1.3810 29 1 5.1056 4.3390 -4.1630 30 1 5.6879 5.8829 -3.4065 31 1 4.7796 6.9850 -5.4674 32 1 4.3468 7.8893 -3.9966 33 1 4.0811 10.3891 -6.6873 34 1 3.6923 7.0632 -2.2461 35 1 2.1960 6.0601 -2.4721 36 1 3.7923 4.6446 0.0095 37 1 3.2330 3.5437 2.1375 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234963382.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:14 Heat of formation + Delta-G solvation = -68.184630 kcal Electronic energy + Delta-G solvation = -23486.130521 eV Core-core repulsion = 19591.839323 eV Total energy + Delta-G solvation = -3894.291198 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.00052 -41.85874 -40.77420 -39.32960 -37.87328 -37.02804 -35.02109 -31.74704 -31.23725 -30.46164 -28.04192 -27.36324 -26.86997 -24.50802 -24.01252 -23.23119 -21.07395 -19.78468 -18.72472 -18.51900 -18.28228 -17.86250 -17.50731 -16.97213 -16.44095 -16.34593 -16.23027 -16.07959 -15.59638 -15.41214 -15.00518 -14.91726 -14.39351 -13.99967 -13.93072 -13.57226 -13.49061 -13.38259 -12.91622 -12.89742 -12.60972 -12.38281 -12.29353 -12.10904 -12.03040 -11.54900 -11.44031 -11.25672 -11.21120 -10.62716 -9.98048 -9.60025 -9.30891 -8.24689 -6.34336 -0.33220 -0.16469 0.94237 1.38476 1.41321 1.49626 1.68200 2.05293 2.37953 2.58857 3.00921 3.07462 3.22949 3.29762 3.54968 3.71883 3.83006 3.92378 4.17228 4.33128 4.34586 4.44173 4.47667 4.49944 4.60657 4.64036 4.71427 4.78317 4.87042 4.90550 4.94932 5.02527 5.16038 5.56434 5.77781 6.04863 6.10557 6.20038 6.44414 6.79273 7.35139 8.85854 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.023832 B = 0.002709 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.587660 B =10333.562389 C =10668.443545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.335 6.335 3 C 0.103 3.897 4 C 0.028 3.972 5 F -0.138 7.138 6 C 0.110 3.890 7 O -0.292 6.292 8 C 0.067 3.933 9 C -0.002 4.002 10 N -0.493 5.493 11 C 0.172 3.828 12 C -0.530 4.530 13 H 0.052 0.948 14 C 0.005 3.995 15 N -0.931 5.931 16 Si 0.966 3.034 17 H -0.278 1.278 18 H -0.273 1.273 19 H -0.267 1.267 20 C -0.008 4.008 21 C -0.168 4.168 22 C -0.047 4.047 23 C -0.077 4.077 24 Cl -0.039 7.039 25 H 0.123 0.877 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.141 0.859 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.002 0.998 32 H -0.007 1.007 33 H 0.266 0.734 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.181 0.819 37 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.321 -15.287 21.028 26.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.252 6.252 3 C 0.057 3.943 4 C 0.008 3.992 5 F -0.116 7.116 6 C 0.062 3.938 7 O -0.205 6.205 8 C 0.011 3.989 9 C -0.131 4.131 10 N -0.216 5.216 11 C 0.046 3.954 12 C -0.568 4.568 13 H 0.070 0.930 14 C -0.193 4.193 15 N -0.571 5.571 16 Si 0.791 3.209 17 H -0.203 1.203 18 H -0.198 1.198 19 H -0.192 1.192 20 C -0.137 4.137 21 C -0.186 4.186 22 C -0.065 4.065 23 C -0.105 4.105 24 Cl -0.010 7.010 25 H 0.141 0.859 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.158 0.842 29 H 0.102 0.898 30 H 0.116 0.884 31 H 0.020 0.980 32 H 0.011 0.989 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.198 0.802 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -2.728 -15.766 20.334 25.874 hybrid contribution -0.257 1.007 -0.693 1.249 sum -2.986 -14.759 19.641 24.749 Atomic orbital electron populations 1.23322 0.76278 1.05557 1.01391 1.86063 1.22229 1.22809 1.94088 1.18101 0.99286 0.87539 0.89368 1.17409 1.07992 0.92222 0.81626 1.91472 1.91426 1.83162 1.45571 1.19242 0.96074 0.90946 0.87494 1.86254 1.68852 1.38280 1.27073 1.23700 0.92914 0.81831 1.00505 1.24099 0.94611 0.99763 0.94660 1.69020 1.20860 1.19294 1.12430 1.19963 0.95510 0.86390 0.93582 1.21384 0.96858 1.06446 1.32131 0.92981 1.25857 0.99326 0.97047 0.97083 1.70043 1.26402 1.17410 1.43218 0.85484 0.79195 0.77516 0.78733 1.20332 1.19837 1.19210 1.24315 1.01827 0.97072 0.90489 1.21523 1.04717 1.03166 0.89226 1.21221 0.93923 0.91278 1.00101 1.21033 1.06833 0.96026 0.86570 1.98375 1.92748 1.80971 1.28895 0.85866 0.91919 0.93654 0.84153 0.89814 0.88390 0.97974 0.98893 0.92500 0.89131 0.90676 0.80152 0.79824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.13 113.37 1.26 1.72 16 2 O -0.34 -7.79 9.74 -93.31 -0.91 -8.70 16 3 C 0.10 2.43 5.72 22.53 0.13 2.56 16 4 C 0.03 0.78 7.32 22.53 0.16 0.95 16 5 F -0.14 -4.54 16.95 44.97 0.76 -3.78 16 6 C 0.11 2.79 6.68 22.51 0.15 2.94 16 7 O -0.29 -9.08 10.05 -93.26 -0.94 -10.01 16 8 C 0.07 1.78 4.06 30.94 0.13 1.91 16 9 C 0.00 -0.08 7.52 83.58 0.63 0.55 16 10 N -0.49 -21.46 6.32 -932.87 -5.89 -27.36 16 11 C 0.17 9.04 4.57 85.56 0.39 9.43 16 12 C -0.53 -30.77 9.39 25.60 0.24 -30.53 16 13 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 14 C 0.01 0.30 5.46 84.66 0.46 0.77 16 15 N -0.93 -55.37 13.29 21.45 0.28 -55.09 16 16 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 17 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 20 C -0.01 -0.26 7.55 83.58 0.63 0.37 16 21 C -0.17 -2.84 9.02 22.38 0.20 -2.64 16 22 C -0.05 -0.66 9.82 22.27 0.22 -0.44 16 23 C -0.08 -1.43 6.33 22.41 0.14 -1.28 16 24 Cl -0.04 -0.63 28.50 -2.72 -0.08 -0.71 16 25 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.14 2.37 5.90 -2.39 -0.01 2.36 16 29 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.10 2.90 7.91 -2.39 -0.02 2.88 16 31 H 0.00 0.12 8.08 -2.39 -0.02 0.10 16 32 H -0.01 -0.36 7.30 -2.39 -0.02 -0.37 16 33 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 34 H 0.09 2.88 7.42 -2.39 -0.02 2.86 16 35 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.18 2.04 5.88 -2.91 -0.02 2.02 16 37 H 0.18 1.29 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -71.60 337.66 1.11 -70.49 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: 1.10 Total: 2.07 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 4.75 Total: -13.69 kcal Atomic # 7 Polarization: -76.84 SS G_CDS: -5.61 Total: -82.45 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -1.85 Total: -18.71 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.76 Total: -3.78 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -0.08 Total: -0.71 kcal Total: -71.60 1.11 -70.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234963382.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.303 kcal (2) G-P(sol) polarization free energy of solvation -71.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds