Wall clock time and date at job start Tue Mar 31 2020 11:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35985 * 117.00278 * 2 1 4 4 C 1.38764 * 120.03946 * 89.99821 * 3 2 1 5 5 F 1.35098 * 120.06054 * 359.95616 * 4 3 2 6 6 C 1.38765 * 119.87367 * 179.97438 * 4 3 2 7 7 O 1.35983 * 120.01927 * 180.02562 * 6 4 3 8 8 C 1.42897 * 116.99422 * 174.91398 * 7 6 4 9 9 H 1.08998 * 110.78709 * 321.84213 * 8 7 6 10 10 C 1.55164 * 110.71658 * 198.60721 * 8 7 6 11 11 C 1.55132 * 101.48486 * 205.97027 * 10 8 7 12 12 N 1.47428 * 104.72553 * 37.29301 * 11 10 8 13 13 C 1.36935 * 125.65045 * 155.81690 * 12 11 10 14 14 H 1.07997 * 119.99727 * 179.69785 * 13 12 11 15 15 C 1.38813 * 119.99588 * 359.69372 * 13 12 11 16 16 N 1.31617 * 120.00337 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99659 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47408 * 180.02562 * 17 15 13 19 19 H 1.48498 * 109.47262 * 300.00274 * 17 15 13 20 20 H 1.48509 * 109.47062 * 59.99898 * 17 15 13 21 21 C 1.47024 * 108.69811 * 335.55420 * 12 11 10 22 22 C 1.38722 * 119.95747 * 0.27373 * 6 4 3 23 23 C 1.38204 * 120.06766 * 359.44819 * 22 6 4 24 24 C 1.38295 * 120.12912 * 0.55485 * 23 22 6 25 25 Cl 1.73596 * 119.98014 * 179.74509 * 24 23 22 26 26 H 1.09001 * 109.46859 * 60.00192 * 1 2 3 27 27 H 1.08995 * 109.47107 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47050 * 300.00546 * 1 2 3 29 29 H 1.09000 * 111.00301 * 324.20701 * 10 8 7 30 30 H 1.08996 * 111.00159 * 88.02455 * 10 8 7 31 31 H 1.09004 * 110.49856 * 278.45463 * 11 10 8 32 32 H 1.08998 * 110.34389 * 156.06186 * 11 10 8 33 33 H 0.96998 * 119.99509 * 179.97438 * 16 15 13 34 34 H 1.09005 * 109.88014 * 120.70512 * 21 12 11 35 35 H 1.09001 * 109.88270 * 241.70670 * 21 12 11 36 36 H 1.07993 * 119.96290 * 179.70325 * 22 6 4 37 37 H 1.08000 * 119.93527 * 180.27353 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 2.3618 1.8305 1.2013 5 9 2.0552 1.2309 2.3724 6 6 2.9923 3.0667 1.1972 7 8 3.3032 3.6756 2.3727 8 6 4.0500 4.8914 2.2956 9 1 4.7967 4.8372 1.5034 10 6 4.7184 5.2124 3.6587 11 6 4.8526 6.7559 3.5811 12 7 3.6267 7.2047 2.8960 13 6 3.0649 8.4493 2.9990 14 1 2.1643 8.6822 2.4504 15 6 3.6532 9.4114 3.8084 16 7 4.7505 9.1273 4.4773 17 14 2.8865 11.1090 3.9494 18 1 3.7004 11.9450 4.8679 19 1 2.8435 11.7457 2.6085 20 1 1.5062 10.9859 4.4834 21 6 3.1107 6.0966 2.0790 22 6 3.3006 3.6831 -0.0066 23 6 2.9908 3.0622 -1.2018 24 6 2.3624 1.8303 -1.2016 25 17 1.9690 1.0569 -2.7052 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 4.0772 4.9138 4.4881 30 1 5.6975 4.7396 3.7346 31 1 5.7337 7.0339 3.0027 32 1 4.9052 7.1826 4.5827 33 1 5.1617 9.7998 5.0426 34 1 2.1000 5.8407 2.3973 35 1 3.1067 6.3821 1.0271 36 1 3.7870 4.6473 -0.0098 37 1 3.2358 3.5421 -2.1378 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234964719.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:16 Heat of formation + Delta-G solvation = -79.669824 kcal Electronic energy + Delta-G solvation = -23945.154891 eV Core-core repulsion = 20050.365658 eV Total energy + Delta-G solvation = -3894.789234 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.01420 -41.58031 -40.36855 -38.61935 -37.82334 -37.05369 -34.32151 -31.64572 -31.35183 -30.54665 -29.13725 -27.92575 -26.57013 -24.09029 -24.02275 -22.17994 -21.75525 -19.89385 -19.11383 -18.64014 -18.31113 -17.95961 -17.47934 -16.84054 -16.49841 -16.27585 -16.16147 -15.88635 -15.54725 -15.28389 -14.90140 -14.52673 -14.20611 -13.98005 -13.73497 -13.55164 -13.45930 -13.07776 -12.96148 -12.73985 -12.61894 -12.36183 -12.21257 -12.09062 -12.07402 -11.80657 -11.54297 -11.42820 -11.22839 -10.76688 -9.99835 -9.34146 -8.94940 -7.80384 -5.25929 -0.34961 -0.18177 0.92261 1.48226 1.50832 1.57169 1.72095 2.05216 2.47849 2.59865 2.98561 3.30827 3.48229 3.55518 3.63699 3.79205 3.84559 3.93787 3.99672 4.27466 4.34410 4.40746 4.48185 4.58012 4.63423 4.71685 4.80979 4.83721 4.86842 4.93763 4.96958 5.16287 5.43427 5.55520 5.74329 6.07593 6.16568 6.27459 7.06786 7.72245 8.34145 9.21412 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.023532 B = 0.003044 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.584005 B = 9197.309816 C = 9607.319157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.333 6.333 3 C 0.106 3.894 4 C 0.033 3.967 5 F -0.134 7.134 6 C 0.111 3.889 7 O -0.306 6.306 8 C 0.083 3.917 9 H 0.110 0.890 10 C -0.124 4.124 11 C 0.154 3.846 12 N -0.623 5.623 13 C -0.244 4.244 14 H 0.081 0.919 15 C -0.062 4.062 16 N -0.947 5.947 17 Si 0.981 3.019 18 H -0.292 1.292 19 H -0.276 1.276 20 H -0.279 1.279 21 C 0.115 3.885 22 C -0.172 4.172 23 C -0.048 4.048 24 C -0.075 4.075 25 Cl -0.037 7.037 26 H 0.061 0.939 27 H 0.125 0.875 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.100 0.900 31 H 0.007 0.993 32 H 0.081 0.919 33 H 0.250 0.750 34 H 0.023 0.977 35 H 0.046 0.954 36 H 0.165 0.835 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.607 -16.741 -13.326 21.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.250 6.250 3 C 0.060 3.940 4 C 0.013 3.987 5 F -0.112 7.112 6 C 0.064 3.936 7 O -0.219 6.219 8 C 0.027 3.973 9 H 0.128 0.872 10 C -0.162 4.162 11 C 0.030 3.970 12 N -0.351 5.351 13 C -0.373 4.373 14 H 0.099 0.901 15 C -0.255 4.255 16 N -0.596 5.596 17 Si 0.809 3.191 18 H -0.218 1.218 19 H -0.202 1.202 20 H -0.205 1.205 21 C -0.010 4.010 22 C -0.190 4.190 23 C -0.066 4.066 24 C -0.103 4.103 25 Cl -0.008 7.008 26 H 0.080 0.920 27 H 0.143 0.857 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.025 0.975 32 H 0.099 0.901 33 H 0.059 0.941 34 H 0.041 0.959 35 H 0.064 0.936 36 H 0.183 0.817 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -4.606 -16.889 -13.110 21.870 hybrid contribution -0.501 1.048 0.481 1.257 sum -5.107 -15.841 -12.629 20.893 Atomic orbital electron populations 1.23336 0.76205 1.05624 1.01443 1.86065 1.22282 1.22557 1.94077 1.18049 0.99163 0.87560 0.89243 1.17268 1.07861 0.91911 0.81693 1.91468 1.91499 1.82937 1.45328 1.19185 0.96001 0.91039 0.87385 1.86230 1.70013 1.38334 1.27302 1.23609 0.92432 0.80362 1.00933 0.87200 1.23068 1.00901 0.97337 0.94902 1.21842 0.87121 0.88719 0.99354 1.44644 1.28106 1.09516 1.52822 1.19395 1.07058 0.87788 1.23048 0.90080 1.25619 0.98187 1.02178 0.99469 1.69975 1.21775 1.34090 1.33767 0.85117 0.77382 0.79054 0.77549 1.21841 1.20174 1.20534 1.21878 0.95918 0.88020 0.95217 1.21486 1.04928 1.02708 0.89898 1.21166 0.94139 0.91506 0.99811 1.20981 1.06689 0.95840 0.86789 1.98371 1.92713 1.80830 1.28867 0.92040 0.85726 0.93483 0.91585 0.88184 0.97519 0.90094 0.94060 0.95921 0.93625 0.81743 0.80254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.13 113.37 1.26 1.71 16 2 O -0.33 -7.85 9.74 -93.38 -0.91 -8.75 16 3 C 0.11 2.62 5.72 22.53 0.13 2.75 16 4 C 0.03 0.96 7.32 22.52 0.16 1.12 16 5 F -0.13 -4.30 16.95 44.97 0.76 -3.54 16 6 C 0.11 3.15 6.63 22.51 0.15 3.30 16 7 O -0.31 -10.13 9.74 -93.36 -0.91 -11.04 16 8 C 0.08 2.72 2.76 31.78 0.09 2.81 16 9 H 0.11 3.01 6.59 -2.39 -0.02 3.00 16 10 C -0.12 -4.51 6.82 32.07 0.22 -4.29 16 11 C 0.15 7.27 5.91 86.93 0.51 7.78 16 12 N -0.62 -31.21 3.39 -691.53 -2.35 -33.55 16 13 C -0.24 -13.38 10.27 84.03 0.86 -12.52 16 14 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 15 C -0.06 -3.40 5.49 84.86 0.47 -2.94 16 16 N -0.95 -54.70 10.08 21.65 0.22 -54.48 16 17 Si 0.98 44.48 29.55 68.60 2.03 46.51 16 18 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 19 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 21 C 0.12 4.57 6.51 86.73 0.56 5.14 16 22 C -0.17 -3.81 8.78 22.38 0.20 -3.61 16 23 C -0.05 -0.87 9.82 22.28 0.22 -0.65 16 24 C -0.08 -1.56 6.33 22.42 0.14 -1.42 16 25 Cl -0.04 -0.66 28.50 -2.72 -0.08 -0.73 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 31 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.08 4.40 5.85 -2.39 -0.01 4.38 16 33 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 34 H 0.02 0.96 8.06 -2.38 -0.02 0.94 16 35 H 0.05 1.65 7.44 -2.39 -0.02 1.64 16 36 H 0.17 3.36 5.31 -2.91 -0.02 3.34 16 37 H 0.18 2.11 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -65.03 329.06 4.85 -60.18 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: 1.11 Total: 6.23 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 4.98 Total: -0.82 kcal Atomic # 7 Polarization: -85.90 SS G_CDS: -2.13 Total: -88.03 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -1.82 Total: -19.79 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 0.76 Total: -3.54 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.08 Total: -0.73 kcal Total: -65.03 4.85 -60.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234964719.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.491 kcal (2) G-P(sol) polarization free energy of solvation -65.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds