Wall clock time and date at job start Tue Mar 31 2020 11:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35982 * 117.00003 * 2 1 4 4 C 1.38766 * 120.03881 * 270.30263 * 3 2 1 5 5 F 1.35103 * 120.06243 * 359.97417 * 4 3 2 6 6 C 1.38764 * 119.87955 * 180.20722 * 4 3 2 7 7 O 1.35972 * 120.03021 * 179.79351 * 6 4 3 8 8 C 1.42895 * 117.00683 * 182.52337 * 7 6 4 9 9 H 1.09006 * 110.64025 * 33.44664 * 8 7 6 10 10 C 1.55153 * 110.72810 * 156.59536 * 8 7 6 11 11 C 1.54907 * 101.58549 * 153.86195 * 10 8 7 12 12 N 1.47419 * 104.83364 * 322.99209 * 11 10 8 13 13 C 1.36936 * 125.64765 * 204.09117 * 12 11 10 14 14 H 1.08004 * 119.99550 * 163.68854 * 13 12 11 15 15 C 1.38807 * 120.00036 * 343.68795 * 13 12 11 16 16 N 1.31617 * 120.00009 * 331.61382 * 15 13 12 17 17 Si 1.86798 * 119.99936 * 151.88890 * 15 13 12 18 18 H 1.48495 * 109.47408 * 269.72354 * 17 15 13 19 19 H 1.48495 * 109.47046 * 29.72697 * 17 15 13 20 20 H 1.48505 * 109.47086 * 149.72253 * 17 15 13 21 21 C 1.47028 * 108.70360 * 24.35590 * 12 11 10 22 22 C 1.38727 * 119.95092 * 359.51413 * 6 4 3 23 23 C 1.38199 * 120.07059 * 0.23116 * 22 6 4 24 24 C 1.38296 * 120.13116 * 0.02562 * 23 22 6 25 25 Cl 1.73588 * 119.97978 * 179.97438 * 24 23 22 26 26 H 1.08997 * 109.47366 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46792 * 299.99597 * 1 2 3 28 28 H 1.08998 * 109.47578 * 59.99732 * 1 2 3 29 29 H 1.09002 * 111.00161 * 35.78319 * 10 8 7 30 30 H 1.09000 * 111.00118 * 271.94186 * 10 8 7 31 31 H 1.09005 * 110.36704 * 204.14980 * 11 10 8 32 32 H 1.08999 * 110.45561 * 81.87901 * 11 10 8 33 33 H 0.97005 * 120.00300 * 355.01394 * 16 15 13 34 34 H 1.08993 * 109.88118 * 118.13064 * 21 12 11 35 35 H 1.08999 * 109.88251 * 239.29646 * 21 12 11 36 36 H 1.07993 * 119.96377 * 180.25455 * 22 6 4 37 37 H 1.08002 * 119.93244 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 2.3560 1.8334 -1.2013 5 9 2.0452 1.2359 -2.3725 6 6 2.9899 3.0678 -1.1974 7 8 3.2986 3.6779 -2.3727 8 6 3.9999 4.9204 -2.2942 9 1 4.6744 4.9275 -1.4379 10 6 4.7778 5.1959 -3.6081 11 6 4.8569 6.7429 -3.6043 12 7 3.5648 7.1855 -3.0496 13 6 2.9785 8.4039 -3.2665 14 1 1.9311 8.5462 -3.0449 15 6 3.7304 9.4559 -3.7711 16 7 5.0235 9.5143 -3.5328 17 14 2.9057 10.7929 -4.7819 18 1 2.9354 10.4170 -6.2182 19 1 1.4966 10.9491 -4.3402 20 1 3.6294 12.0755 -4.5907 21 6 3.0128 6.1046 -2.2198 22 6 3.3033 3.6817 0.0065 23 6 2.9891 3.0631 1.2017 24 6 2.3622 1.8304 1.2015 25 17 1.9700 1.0565 2.7051 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 4.2224 4.8351 -4.4739 30 1 5.7734 4.7536 -3.5727 31 1 4.9826 7.1188 -4.6197 32 1 5.6773 7.0808 -2.9712 33 1 5.4384 8.8633 -2.9454 34 1 2.9136 6.4428 -1.1884 35 1 2.0408 5.7994 -2.6072 36 1 3.7929 4.6443 0.0097 37 1 3.2338 3.5432 2.1376 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234964723.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:19 Heat of formation + Delta-G solvation = -66.988597 kcal Electronic energy + Delta-G solvation = -23954.013294 eV Core-core repulsion = 20059.773960 eV Total energy + Delta-G solvation = -3894.239334 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.93718 -40.55341 -39.35803 -37.50697 -36.84637 -36.02223 -32.63589 -30.63395 -29.99739 -29.20131 -27.75922 -27.13316 -24.53578 -23.17382 -22.96923 -20.53677 -20.45527 -18.92416 -17.80265 -17.65352 -17.31282 -16.97028 -16.49641 -15.44487 -15.32733 -15.10988 -14.97427 -14.65733 -14.02890 -13.87616 -13.57104 -13.43467 -13.23685 -13.08486 -12.61874 -12.53145 -12.31636 -11.93716 -11.60075 -11.34675 -11.28921 -10.99541 -10.75686 -10.61401 -10.43526 -10.38112 -10.22909 -10.07621 -9.62501 -9.08365 -8.52109 -8.32833 -7.07768 -6.20731 -3.25354 0.55232 0.75338 1.78073 2.71541 2.99837 3.47383 3.48884 3.50865 3.66093 3.92791 4.45446 4.48019 4.56770 4.74080 4.88653 4.94940 4.98065 5.02148 5.19811 5.22849 5.28413 5.31650 5.43769 5.54065 5.70072 5.74474 5.82013 5.95784 6.03374 6.16435 6.32369 6.42170 6.79431 6.85777 6.96225 7.24828 7.67687 8.38114 8.89781 9.70201 10.21853 11.12783 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.024370 B = 0.003008 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.659753 B = 9305.846117 C = 9610.200284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.318 6.318 3 C 0.107 3.893 4 C 0.056 3.944 5 F -0.118 7.118 6 C 0.130 3.870 7 O -0.289 6.289 8 C 0.065 3.935 9 H 0.084 0.916 10 C -0.127 4.127 11 C 0.144 3.856 12 N -0.599 5.599 13 C -0.341 4.341 14 H 0.067 0.933 15 C -0.023 4.023 16 N -0.915 5.915 17 Si 1.069 2.931 18 H -0.292 1.292 19 H -0.292 1.292 20 H -0.289 1.289 21 C 0.118 3.882 22 C -0.177 4.177 23 C -0.062 4.062 24 C -0.075 4.075 25 Cl -0.051 7.051 26 H 0.100 0.900 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.032 0.968 33 H 0.269 0.731 34 H 0.030 0.970 35 H 0.038 0.962 36 H 0.156 0.844 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.912 -17.381 9.886 20.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.235 6.235 3 C 0.061 3.939 4 C 0.035 3.965 5 F -0.097 7.097 6 C 0.082 3.918 7 O -0.201 6.201 8 C 0.010 3.990 9 H 0.102 0.898 10 C -0.165 4.165 11 C 0.018 3.982 12 N -0.327 5.327 13 C -0.468 4.468 14 H 0.085 0.915 15 C -0.225 4.225 16 N -0.555 5.555 17 Si 0.899 3.101 18 H -0.219 1.219 19 H -0.218 1.218 20 H -0.215 1.215 21 C -0.008 4.008 22 C -0.196 4.196 23 C -0.081 4.081 24 C -0.103 4.103 25 Cl -0.022 7.022 26 H 0.119 0.881 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.173 0.827 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.715 -16.229 8.869 19.086 hybrid contribution -0.503 -1.290 1.058 1.743 sum -5.218 -17.519 9.927 20.801 Atomic orbital electron populations 1.23112 0.77856 1.03903 1.01245 1.86095 1.20657 1.22671 1.94037 1.17949 0.99276 0.87431 0.89252 1.16999 1.06386 0.91489 0.81617 1.91521 1.91071 1.82708 1.44368 1.18977 0.94730 0.90910 0.87184 1.86251 1.71396 1.36607 1.25822 1.23820 0.93727 0.80855 1.00647 0.89774 1.22988 0.98946 0.98888 0.95698 1.21590 0.89267 0.88375 0.98921 1.44443 1.21550 1.12984 1.53751 1.19779 0.94245 0.87303 1.45483 0.91496 1.25800 0.96328 0.98832 1.01499 1.70784 1.11898 1.35792 1.37064 0.83449 0.74453 0.75695 0.76508 1.21922 1.21799 1.21536 1.21747 0.95646 0.88183 0.95186 1.21330 1.05236 1.02663 0.90334 1.20841 0.95893 0.92221 0.99145 1.20861 1.07199 0.95538 0.86686 1.98363 1.92871 1.80947 1.30029 0.88116 0.92932 0.93007 0.90119 0.90719 0.92084 0.95046 0.91984 0.95211 0.94380 0.82687 0.83390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.13 101.05 1.12 1.42 16 2 O -0.32 -3.90 9.74 -19.69 -0.19 -4.10 16 3 C 0.11 1.38 5.72 -39.18 -0.22 1.15 16 4 C 0.06 0.81 7.32 -39.19 -0.29 0.52 16 5 F -0.12 -1.85 16.95 2.25 0.04 -1.81 16 6 C 0.13 1.88 6.68 -39.21 -0.26 1.62 16 7 O -0.29 -4.77 9.73 -19.65 -0.19 -4.97 16 8 C 0.07 1.10 2.75 -24.89 -0.07 1.03 16 9 H 0.08 1.23 6.14 -51.93 -0.32 0.91 16 10 C -0.13 -2.22 6.81 -24.59 -0.17 -2.38 16 11 C 0.14 3.19 5.29 -2.53 -0.01 3.18 16 12 N -0.60 -14.83 3.30 -170.07 -0.56 -15.39 16 13 C -0.34 -9.47 10.02 -15.06 -0.15 -9.62 16 14 H 0.07 1.87 7.97 -52.48 -0.42 1.45 16 15 C -0.02 -0.63 5.08 -17.43 -0.09 -0.72 16 16 N -0.91 -26.86 12.95 55.49 0.72 -26.15 16 17 Si 1.07 24.97 30.00 -169.99 -5.10 19.87 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 C 0.12 2.41 6.86 -3.05 -0.02 2.39 16 22 C -0.18 -2.15 8.94 -39.42 -0.35 -2.50 16 23 C -0.06 -0.66 9.82 -39.57 -0.39 -1.05 16 24 C -0.08 -0.86 6.33 -39.35 -0.25 -1.11 16 25 Cl -0.05 -0.52 28.49 -51.86 -1.48 -2.00 16 26 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.43 8.14 -51.92 -0.42 0.00 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 1.48 7.93 -51.93 -0.41 1.07 16 32 H 0.03 0.72 6.80 -51.93 -0.35 0.37 16 33 H 0.27 7.82 6.01 -40.82 -0.25 7.57 16 34 H 0.03 0.59 7.94 -51.93 -0.41 0.18 16 35 H 0.04 0.81 8.05 -51.93 -0.42 0.39 16 36 H 0.16 1.79 5.70 -52.49 -0.30 1.49 16 37 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 330.55 15.07 4.98 4.98 Total: -1.00 -31.05 330.55 -7.14 -38.19 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -4.21 Total: -2.56 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -1.15 Total: -6.08 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.16 Total: -41.54 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.38 Total: -9.06 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.10 Total: 19.87 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.48 Total: -2.00 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.05 -7.14 -38.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234964723.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.799 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds