Wall clock time and date at job start Tue Mar 31 2020 11:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35982 * 117.00003 * 2 1 4 4 C 1.38766 * 120.03881 * 270.30263 * 3 2 1 5 5 F 1.35103 * 120.06243 * 359.97417 * 4 3 2 6 6 C 1.38764 * 119.87955 * 180.20722 * 4 3 2 7 7 O 1.35972 * 120.03021 * 179.79351 * 6 4 3 8 8 C 1.42895 * 117.00683 * 182.52337 * 7 6 4 9 9 H 1.09006 * 110.64025 * 33.44664 * 8 7 6 10 10 C 1.55153 * 110.72810 * 156.59536 * 8 7 6 11 11 C 1.54907 * 101.58549 * 153.86195 * 10 8 7 12 12 N 1.47419 * 104.83364 * 322.99209 * 11 10 8 13 13 C 1.36936 * 125.64765 * 204.09117 * 12 11 10 14 14 H 1.08004 * 119.99550 * 163.68854 * 13 12 11 15 15 C 1.38807 * 120.00036 * 343.68795 * 13 12 11 16 16 N 1.31617 * 120.00009 * 331.61382 * 15 13 12 17 17 Si 1.86798 * 119.99936 * 151.88890 * 15 13 12 18 18 H 1.48495 * 109.47408 * 269.72354 * 17 15 13 19 19 H 1.48495 * 109.47046 * 29.72697 * 17 15 13 20 20 H 1.48505 * 109.47086 * 149.72253 * 17 15 13 21 21 C 1.47028 * 108.70360 * 24.35590 * 12 11 10 22 22 C 1.38727 * 119.95092 * 359.51413 * 6 4 3 23 23 C 1.38199 * 120.07059 * 0.23116 * 22 6 4 24 24 C 1.38296 * 120.13116 * 0.02562 * 23 22 6 25 25 Cl 1.73588 * 119.97978 * 179.97438 * 24 23 22 26 26 H 1.08997 * 109.47366 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46792 * 299.99597 * 1 2 3 28 28 H 1.08998 * 109.47578 * 59.99732 * 1 2 3 29 29 H 1.09002 * 111.00161 * 35.78319 * 10 8 7 30 30 H 1.09000 * 111.00118 * 271.94186 * 10 8 7 31 31 H 1.09005 * 110.36704 * 204.14980 * 11 10 8 32 32 H 1.08999 * 110.45561 * 81.87901 * 11 10 8 33 33 H 0.97005 * 120.00300 * 355.01394 * 16 15 13 34 34 H 1.08993 * 109.88118 * 118.13064 * 21 12 11 35 35 H 1.08999 * 109.88251 * 239.29646 * 21 12 11 36 36 H 1.07993 * 119.96377 * 180.25455 * 22 6 4 37 37 H 1.08002 * 119.93244 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 2.3560 1.8334 -1.2013 5 9 2.0452 1.2359 -2.3725 6 6 2.9899 3.0678 -1.1974 7 8 3.2986 3.6779 -2.3727 8 6 3.9999 4.9204 -2.2942 9 1 4.6744 4.9275 -1.4379 10 6 4.7778 5.1959 -3.6081 11 6 4.8569 6.7429 -3.6043 12 7 3.5648 7.1855 -3.0496 13 6 2.9785 8.4039 -3.2665 14 1 1.9311 8.5462 -3.0449 15 6 3.7304 9.4559 -3.7711 16 7 5.0235 9.5143 -3.5328 17 14 2.9057 10.7929 -4.7819 18 1 2.9354 10.4170 -6.2182 19 1 1.4966 10.9491 -4.3402 20 1 3.6294 12.0755 -4.5907 21 6 3.0128 6.1046 -2.2198 22 6 3.3033 3.6817 0.0065 23 6 2.9891 3.0631 1.2017 24 6 2.3622 1.8304 1.2015 25 17 1.9700 1.0565 2.7051 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 4.2224 4.8351 -4.4739 30 1 5.7734 4.7536 -3.5727 31 1 4.9826 7.1188 -4.6197 32 1 5.6773 7.0808 -2.9712 33 1 5.4384 8.8633 -2.9454 34 1 2.9136 6.4428 -1.1884 35 1 2.0408 5.7994 -2.6072 36 1 3.7929 4.6443 0.0097 37 1 3.2338 3.5432 2.1376 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234964723.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:18 Heat of formation + Delta-G solvation = -85.066162 kcal Electronic energy + Delta-G solvation = -23954.797196 eV Core-core repulsion = 20059.773960 eV Total energy + Delta-G solvation = -3895.023236 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.05361 -41.65219 -40.44462 -38.81843 -37.90853 -37.13472 -34.53506 -31.66352 -31.32865 -30.63931 -29.27511 -27.96780 -26.42914 -24.21880 -24.08023 -22.25039 -21.86422 -20.01403 -19.68733 -18.69532 -18.47599 -18.02206 -17.52866 -16.63903 -16.53823 -16.32650 -16.19803 -15.76300 -15.57202 -15.34577 -15.12298 -14.96773 -14.49794 -14.07133 -14.00994 -13.57961 -13.48983 -13.09592 -12.80050 -12.71552 -12.56501 -12.49842 -12.38955 -12.14431 -11.89633 -11.70534 -11.68187 -11.55035 -11.26324 -10.57423 -10.04291 -9.38989 -9.09349 -8.38063 -5.39381 -0.39492 -0.22865 0.88734 1.57709 1.62396 1.65463 1.83219 2.00647 2.52403 2.62367 2.93810 3.13321 3.36020 3.44798 3.52196 3.69904 3.70711 3.81115 3.89114 4.22019 4.29581 4.32132 4.38063 4.38670 4.52263 4.69191 4.71497 4.75551 4.79204 4.80683 4.87454 4.97020 5.08476 5.18204 5.61655 6.01310 6.11509 6.27524 6.83536 7.63260 8.18924 8.95502 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.024370 B = 0.003008 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.659753 B = 9305.846117 C = 9610.200284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.332 6.332 3 C 0.107 3.893 4 C 0.035 3.965 5 F -0.133 7.133 6 C 0.111 3.889 7 O -0.303 6.303 8 C 0.083 3.917 9 H 0.113 0.887 10 C -0.114 4.114 11 C 0.146 3.854 12 N -0.623 5.623 13 C -0.353 4.353 14 H 0.058 0.942 15 C -0.071 4.071 16 N -0.940 5.940 17 Si 1.117 2.883 18 H -0.285 1.285 19 H -0.274 1.274 20 H -0.290 1.290 21 C 0.116 3.884 22 C -0.173 4.173 23 C -0.048 4.048 24 C -0.075 4.075 25 Cl -0.036 7.036 26 H 0.125 0.875 27 H 0.061 0.939 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.110 0.890 31 H 0.030 0.970 32 H 0.024 0.976 33 H 0.259 0.741 34 H 0.037 0.963 35 H 0.025 0.975 36 H 0.164 0.836 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.236 -18.349 11.377 22.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.249 6.249 3 C 0.061 3.939 4 C 0.014 3.986 5 F -0.111 7.111 6 C 0.064 3.936 7 O -0.216 6.216 8 C 0.027 3.973 9 H 0.130 0.870 10 C -0.153 4.153 11 C 0.021 3.979 12 N -0.351 5.351 13 C -0.481 4.481 14 H 0.076 0.924 15 C -0.267 4.267 16 N -0.582 5.582 17 Si 0.942 3.058 18 H -0.212 1.212 19 H -0.199 1.199 20 H -0.217 1.217 21 C -0.009 4.009 22 C -0.192 4.192 23 C -0.066 4.066 24 C -0.102 4.102 25 Cl -0.007 7.007 26 H 0.143 0.857 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.128 0.872 31 H 0.048 0.952 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.043 0.957 36 H 0.182 0.818 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -5.059 -17.239 10.380 20.749 hybrid contribution -0.492 -1.118 0.720 1.418 sum -5.551 -18.358 11.100 22.159 Atomic orbital electron populations 1.23345 0.76154 1.05679 1.01453 1.86066 1.22305 1.22489 1.94066 1.18051 0.99120 0.87525 0.89218 1.17248 1.07592 0.91987 0.81734 1.91474 1.91384 1.83016 1.45260 1.19161 0.96008 0.91216 0.87258 1.86210 1.71971 1.36152 1.27252 1.23560 0.92761 0.79873 1.01121 0.86978 1.22863 1.01074 0.95189 0.96127 1.21509 0.88071 0.91581 0.96714 1.44676 1.22398 1.12967 1.55107 1.19990 0.94090 0.88743 1.45274 0.92425 1.27102 0.96355 1.01086 1.02199 1.70883 1.12772 1.36330 1.38234 0.82816 0.74454 0.73197 0.75378 1.21153 1.19880 1.21667 1.21829 0.95930 0.88563 0.94592 1.21443 1.04959 1.02822 0.89983 1.21160 0.94121 0.91543 0.99790 1.20985 1.06638 0.95749 0.86871 1.98374 1.92724 1.80769 1.28807 0.85666 0.92059 0.93444 0.90629 0.87206 0.95193 0.95811 0.93005 0.94485 0.95725 0.81835 0.80301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.13 113.37 1.26 1.70 16 2 O -0.33 -7.70 9.74 -93.35 -0.91 -8.61 16 3 C 0.11 2.60 5.72 22.53 0.13 2.73 16 4 C 0.04 0.99 7.32 22.52 0.16 1.15 16 5 F -0.13 -4.17 16.95 44.97 0.76 -3.41 16 6 C 0.11 3.07 6.68 22.51 0.15 3.22 16 7 O -0.30 -9.72 9.73 -93.23 -0.91 -10.63 16 8 C 0.08 2.66 2.75 31.79 0.09 2.75 16 9 H 0.11 2.98 6.14 -2.38 -0.01 2.97 16 10 C -0.11 -3.88 6.81 31.98 0.22 -3.66 16 11 C 0.15 6.57 5.29 86.86 0.46 7.03 16 12 N -0.62 -31.24 3.30 -691.97 -2.28 -33.52 16 13 C -0.35 -19.91 10.02 84.03 0.84 -19.06 16 14 H 0.06 3.27 7.97 -2.91 -0.02 3.25 16 15 C -0.07 -3.99 5.08 84.86 0.43 -3.56 16 16 N -0.94 -56.16 12.95 21.65 0.28 -55.87 16 17 Si 1.12 50.67 30.00 68.60 2.06 52.72 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 20 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 21 C 0.12 4.70 6.86 86.73 0.60 5.30 16 22 C -0.17 -3.81 8.94 22.38 0.20 -3.61 16 23 C -0.05 -0.86 9.82 22.27 0.22 -0.64 16 24 C -0.07 -1.54 6.33 22.42 0.14 -1.39 16 25 Cl -0.04 -0.63 28.49 -2.72 -0.08 -0.71 16 26 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 31 H 0.03 1.50 7.93 -2.38 -0.02 1.48 16 32 H 0.02 1.11 6.80 -2.39 -0.02 1.09 16 33 H 0.26 15.47 6.01 -92.70 -0.56 14.91 16 34 H 0.04 1.44 7.94 -2.39 -0.02 1.43 16 35 H 0.02 1.06 8.05 -2.39 -0.02 1.04 16 36 H 0.16 3.30 5.70 -2.91 -0.02 3.29 16 37 H 0.18 2.12 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -68.12 330.55 5.14 -62.98 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 1.32 Total: 5.11 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: 4.90 Total: -8.05 kcal Atomic # 7 Polarization: -87.40 SS G_CDS: -2.00 Total: -89.40 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -1.82 Total: -19.24 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.76 Total: -3.41 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 2.06 Total: 52.72 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -0.08 Total: -0.71 kcal Total: -68.12 5.14 -62.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234964723.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.089 kcal (2) G-P(sol) polarization free energy of solvation -68.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds