Wall clock time and date at job start Tue Mar 31 2020 11:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39059 * 120.56595 * 7.80320 * 3 2 1 5 5 C 1.39424 * 119.80102 * 180.02562 * 4 3 2 6 6 C 1.47921 * 119.50156 * 180.02562 * 5 4 3 7 7 C 1.39643 * 120.13873 * 309.97272 * 6 5 4 8 8 C 1.37824 * 119.91136 * 180.02562 * 7 6 5 9 9 C 1.38714 * 120.17442 * 0.02562 * 8 7 6 10 10 F 1.35094 * 119.86468 * 179.97438 * 9 8 7 11 11 C 1.38543 * 120.26945 * 359.97438 * 9 8 7 12 12 C 1.50702 * 119.95396 * 180.02562 * 11 9 8 13 13 O 1.42899 * 109.46862 * 89.99644 * 12 11 9 14 14 C 1.38156 * 120.09392 * 359.75910 * 11 9 8 15 15 F 1.35096 * 120.09259 * 180.27743 * 14 11 9 16 16 C 1.40021 * 120.99643 * 359.97438 * 5 4 3 17 17 C 1.35974 * 121.18816 * 0.02562 * 16 5 4 18 18 C 1.41061 * 120.11231 * 359.97438 * 17 16 5 19 19 C 1.40417 * 120.48524 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99928 * 204.74056 * 19 18 17 21 21 C 1.40280 * 120.00264 * 24.73905 * 19 18 17 22 22 N 1.30649 * 120.00142 * 17.52797 * 21 19 18 23 23 Si 1.86796 * 120.00120 * 197.53313 * 21 19 18 24 24 H 1.48501 * 109.47156 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47302 * 119.99827 * 23 21 19 26 26 H 1.48500 * 109.47250 * 239.99683 * 23 21 19 27 27 H 1.07996 * 120.09964 * 359.97438 * 4 3 2 28 28 H 1.08005 * 120.04432 * 359.97438 * 7 6 5 29 29 H 1.07998 * 119.91121 * 180.02562 * 8 7 6 30 30 H 1.08996 * 109.46969 * 209.99575 * 12 11 9 31 31 H 1.08996 * 109.47104 * 329.99770 * 12 11 9 32 32 H 0.96702 * 113.99425 * 179.97438 * 13 12 11 33 33 H 1.07998 * 119.41114 * 180.28495 * 16 5 4 34 34 H 1.08001 * 119.94783 * 180.02562 * 17 16 5 35 35 H 0.96992 * 120.00595 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2757 -1.1853 -0.1626 5 6 4.6698 -1.1663 -0.1595 6 6 5.4160 -2.4317 -0.3335 7 6 5.0994 -3.5453 0.4472 8 6 5.7980 -4.7218 0.2815 9 6 6.8150 -4.8024 -0.6584 10 9 7.4960 -5.9585 -0.8152 11 6 7.1352 -3.7020 -1.4369 12 6 8.2410 -3.7976 -2.4563 13 8 7.6997 -4.2260 -3.7074 14 6 6.4385 -2.5188 -1.2839 15 9 6.7470 -1.4475 -2.0470 16 6 5.3743 0.0326 0.0048 17 6 4.7233 1.2153 0.1669 18 6 3.3132 1.2521 0.1715 19 6 2.6329 2.4691 0.3377 20 1 1.6280 2.4764 0.7335 21 6 3.2584 3.6756 -0.0101 22 7 4.3064 3.6669 -0.7902 23 14 2.5930 5.2946 0.6420 24 1 1.4082 5.0338 1.4985 25 1 3.6424 5.9743 1.4434 26 1 2.1999 6.1629 -0.4967 27 1 2.7471 -2.1184 -0.2900 28 1 4.3088 -3.4846 1.1805 29 1 5.5529 -5.5832 0.8850 30 1 8.7083 -2.8204 -2.5780 31 1 8.9863 -4.5171 -2.1174 32 1 8.3566 -4.3093 -4.4122 33 1 6.4542 0.0183 -0.0016 34 1 5.2867 2.1282 0.2915 35 1 4.7387 4.5011 -1.0310 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235885478.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:29 Heat of formation + Delta-G solvation = -92.123630 kcal Electronic energy + Delta-G solvation = -24525.975908 eV Core-core repulsion = 20509.619182 eV Total energy + Delta-G solvation = -4016.356727 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.97699 -49.90099 -40.26752 -39.17572 -37.69031 -36.96833 -35.94610 -33.26610 -32.34693 -31.64911 -30.36042 -27.39160 -27.02752 -24.12384 -23.93505 -23.06170 -21.85770 -19.57678 -19.10684 -18.84040 -18.56666 -18.29156 -17.27716 -16.82854 -16.65071 -16.37398 -16.20470 -15.85108 -15.67027 -15.38632 -15.13585 -15.03533 -14.63353 -14.54952 -14.10530 -13.80581 -13.58376 -13.51534 -13.46094 -13.33161 -13.06537 -12.82352 -12.76252 -12.47053 -12.17137 -12.03524 -11.64299 -11.58132 -11.24592 -11.09369 -10.03554 -9.84012 -9.52431 -9.09435 -8.88964 -6.56404 -0.13676 0.01399 0.42733 0.94373 1.36262 1.46579 1.51146 2.02233 2.11348 2.25954 2.46529 2.62792 2.93789 3.29877 3.42740 3.53479 3.62842 3.72745 3.83719 3.98734 4.19988 4.29645 4.37316 4.44015 4.53859 4.84440 4.86681 4.91115 5.03168 5.06076 5.09236 5.19195 5.31136 5.44918 5.68168 5.82850 5.89069 6.03383 6.06795 6.40540 6.57905 6.73658 6.82739 6.95311 8.00460 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.019417 B = 0.003524 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.670661 B = 7942.793884 C = 8796.014909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C 0.306 3.694 3 C -0.209 4.209 4 C 0.006 3.994 5 C -0.200 4.200 6 C -0.053 4.053 7 C -0.058 4.058 8 C -0.146 4.146 9 C 0.118 3.882 10 F -0.133 7.133 11 C -0.174 4.174 12 C 0.120 3.880 13 O -0.585 6.585 14 C 0.120 3.880 15 F -0.136 7.136 16 C -0.045 4.045 17 C -0.180 4.180 18 C 0.135 3.865 19 C -0.450 4.450 20 H 0.075 0.925 21 C 0.044 3.956 22 N -0.776 5.776 23 Si 0.981 3.019 24 H -0.264 1.264 25 H -0.250 1.250 26 H -0.262 1.262 27 H 0.127 0.873 28 H 0.163 0.837 29 H 0.174 0.826 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.402 0.598 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.306 -10.074 0.668 15.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.206 5.206 2 C -0.003 4.003 3 C -0.215 4.215 4 C -0.015 4.015 5 C -0.201 4.201 6 C -0.054 4.054 7 C -0.076 4.076 8 C -0.165 4.165 9 C 0.098 3.902 10 F -0.111 7.111 11 C -0.175 4.175 12 C 0.043 3.957 13 O -0.394 6.394 14 C 0.100 3.900 15 F -0.115 7.115 16 C -0.065 4.065 17 C -0.199 4.199 18 C 0.130 3.870 19 C -0.476 4.476 20 H 0.093 0.907 21 C -0.178 4.178 22 N -0.398 5.398 23 Si 0.800 3.200 24 H -0.188 1.188 25 H -0.174 1.174 26 H -0.187 1.187 27 H 0.144 0.856 28 H 0.181 0.819 29 H 0.191 0.809 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.253 0.747 33 H 0.125 0.875 34 H 0.136 0.864 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.237 -9.924 0.817 13.582 hybrid contribution 0.852 0.998 -0.542 1.420 sum 10.088 -8.926 0.275 13.473 Atomic orbital electron populations 1.81013 1.13092 1.10581 1.15932 1.25886 0.92797 0.90857 0.90718 1.16893 0.83020 0.95850 1.25717 1.20713 0.92548 0.95275 0.92919 1.17723 0.91821 0.91479 1.19096 1.19023 0.95312 0.95261 0.95770 1.21336 0.98999 0.89879 0.97377 1.21377 0.95477 1.00470 0.99150 1.17308 0.93926 0.80959 0.97972 1.91480 1.78469 1.46262 1.94902 1.19670 1.02890 0.92761 1.02220 1.20768 0.91856 1.00430 0.82638 1.86520 1.40889 1.90726 1.21278 1.17535 0.96821 0.83573 0.92031 1.91476 1.91935 1.54169 1.73897 1.20597 0.98417 0.91819 0.95629 1.20847 0.93356 0.97358 1.08324 1.18759 0.92308 0.90485 0.85466 1.19967 1.01445 0.91657 1.34538 0.90686 1.26855 0.94034 1.04731 0.92229 1.69719 1.16242 1.32597 1.21242 0.85155 0.79744 0.75691 0.79393 1.18770 1.17362 1.18662 0.85554 0.81906 0.80886 0.91532 0.90183 0.74729 0.87535 0.86412 0.88452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -25.13 18.54 19.00 0.35 -24.77 16 2 C 0.31 14.23 14.29 88.33 1.26 15.49 16 3 C -0.21 -9.41 5.93 -19.64 -0.12 -9.53 16 4 C 0.01 0.23 9.18 22.75 0.21 0.44 16 5 C -0.20 -7.53 5.33 -19.99 -0.11 -7.63 16 6 C -0.05 -1.67 5.45 -19.98 -0.11 -1.78 16 7 C -0.06 -1.42 9.47 22.51 0.21 -1.21 16 8 C -0.15 -3.10 10.01 22.29 0.22 -2.88 16 9 C 0.12 2.91 7.25 22.46 0.16 3.07 16 10 F -0.13 -3.13 16.46 44.97 0.74 -2.39 16 11 C -0.17 -4.80 5.52 -19.81 -0.11 -4.91 16 12 C 0.12 2.75 6.81 71.24 0.48 3.23 16 13 O -0.58 -13.79 13.64 -148.98 -2.03 -15.83 16 14 C 0.12 3.86 7.07 22.65 0.16 4.02 16 15 F -0.14 -4.90 15.06 44.97 0.68 -4.22 16 16 C -0.05 -1.85 8.71 22.18 0.19 -1.65 16 17 C -0.18 -8.17 8.63 22.44 0.19 -7.97 16 18 C 0.14 6.52 5.73 -19.86 -0.11 6.40 16 19 C -0.45 -21.94 8.56 23.30 0.20 -21.74 16 20 H 0.07 3.75 7.37 -2.91 -0.02 3.73 16 21 C 0.04 1.95 5.15 85.37 0.44 2.39 16 22 N -0.78 -35.01 10.95 21.88 0.24 -34.77 16 23 Si 0.98 34.06 29.60 68.60 2.03 36.09 16 24 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 25 H -0.25 -8.02 7.11 99.48 0.71 -7.32 16 26 H -0.26 -8.80 7.11 99.48 0.71 -8.10 16 27 H 0.13 4.23 8.01 -2.91 -0.02 4.20 16 28 H 0.16 3.33 8.03 -2.91 -0.02 3.31 16 29 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 30 H 0.07 1.44 7.64 -2.39 -0.02 1.42 16 31 H 0.08 1.46 7.63 -2.39 -0.02 1.45 16 32 H 0.40 4.96 9.12 -74.06 -0.68 4.29 16 33 H 0.11 3.98 7.70 -2.91 -0.02 3.96 16 34 H 0.12 5.48 6.17 -2.91 -0.02 5.46 16 35 H 0.30 12.03 8.29 -92.71 -0.77 11.27 16 Total: -1.00 -58.50 326.68 5.70 -52.80 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.51 Total: 17.35 kcal Atomic # 6 Polarization: -27.44 SS G_CDS: 3.19 Total: -24.26 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: 0.59 Total: -59.54 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -2.03 Total: -15.83 kcal Atomic # 9 Polarization: -8.02 SS G_CDS: 1.42 Total: -6.61 kcal Atomic # 14 Polarization: 34.06 SS G_CDS: 2.03 Total: 36.09 kcal Total: -58.50 5.70 -52.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235885478.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.328 kcal (2) G-P(sol) polarization free energy of solvation -58.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds