Wall clock time and date at job start Tue Mar 31 2020 11:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86801 * 120.00401 * 2 1 4 4 H 1.48505 * 109.46868 * 269.99912 * 3 2 1 5 5 H 1.48500 * 109.47110 * 29.99636 * 3 2 1 6 6 H 1.48493 * 109.47424 * 149.99819 * 3 2 1 7 7 C 1.38634 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00023 * 359.97438 * 7 2 1 9 9 O 1.34810 * 120.00099 * 180.27966 * 7 2 1 10 10 C 1.35641 * 117.00323 * 174.73330 * 9 7 2 11 11 C 1.38695 * 120.12817 * 5.59850 * 10 9 7 12 12 C 1.38341 * 120.03930 * 179.70018 * 11 10 9 13 13 F 1.35098 * 119.85819 * 180.29831 * 12 11 10 14 14 C 1.38706 * 120.29252 * 0.60650 * 12 11 10 15 15 C 1.37939 * 120.25727 * 359.67417 * 14 12 11 16 16 C 1.39413 * 119.96055 * 0.02562 * 15 14 12 17 17 C 1.48041 * 120.14900 * 179.97438 * 16 15 14 18 18 C 1.38959 * 120.29221 * 65.01888 * 17 16 15 19 19 C 1.38678 * 120.20800 * 179.97438 * 18 17 16 20 20 F 1.35097 * 119.62358 * 180.02562 * 19 18 17 21 21 C 1.38111 * 120.76501 * 0.02562 * 19 18 17 22 22 C 1.39133 * 120.17862 * 359.97438 * 21 19 18 23 23 N 1.37738 * 133.32517 * 180.02562 * 22 21 19 24 24 H 0.97000 * 125.07979 * 0.02562 * 23 22 21 25 25 C 1.36867 * 109.84517 * 179.97438 * 23 22 21 26 26 C 1.34339 * 109.86785 * 359.97438 * 25 23 22 27 27 C 1.40548 * 119.53018 * 359.75789 * 22 21 19 28 28 H 0.97003 * 119.99378 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.98322 * 359.97438 * 11 10 9 30 30 H 1.07998 * 119.87658 * 179.70203 * 14 12 11 31 31 H 1.08005 * 120.01965 * 180.02562 * 15 14 12 32 32 H 1.08005 * 119.89860 * 359.97438 * 18 17 16 33 33 H 1.07999 * 119.91132 * 180.02562 * 21 19 18 34 34 H 1.07996 * 125.06575 * 180.02562 * 25 23 22 35 35 H 1.07994 * 126.49959 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4974 2.0463 -1.4001 5 1 1.4473 2.6527 0.7000 6 1 3.5473 1.4401 0.7000 7 6 2.0088 -1.2006 0.0005 8 1 1.4688 -2.1359 0.0014 9 8 3.3569 -1.2007 0.0062 10 6 3.9722 -2.4044 0.1174 11 6 3.2246 -3.5725 0.1020 12 6 3.8546 -4.7994 0.2093 13 9 3.1234 -5.9352 0.1879 14 6 5.2333 -4.8685 0.3451 15 6 5.9882 -3.7142 0.3676 16 6 5.3649 -2.4724 0.2541 17 6 6.1710 -1.2309 0.2783 18 6 7.0791 -0.9648 -0.7393 19 6 7.8329 0.1989 -0.7151 20 9 8.7119 0.4460 -1.7108 21 6 7.6954 1.1084 0.3152 22 6 6.7933 0.8661 1.3463 23 7 6.4426 1.5665 2.4793 24 1 6.8174 2.4209 2.7448 25 6 5.4856 0.8774 3.1739 26 6 5.1891 -0.2648 2.5319 27 6 6.0202 -0.3075 1.3289 28 1 -0.4849 0.8401 -0.0004 29 1 2.1503 -3.5245 0.0019 30 1 5.7177 -5.8297 0.4331 31 1 7.0615 -3.7725 0.4732 32 1 7.1983 -1.6666 -1.5516 33 1 8.2892 2.0105 0.3200 34 1 5.0353 1.2037 4.0997 35 1 4.4709 -1.0088 2.8432 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240032790.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:39 Heat of formation + Delta-G solvation = -46.057478 kcal Electronic energy + Delta-G solvation = -25599.230102 eV Core-core repulsion = 21584.870953 eV Total energy + Delta-G solvation = -4014.359148 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.88156 -49.83290 -42.16203 -40.87086 -38.41544 -37.30611 -34.49580 -33.57990 -31.46013 -30.94155 -30.11370 -28.81446 -27.28782 -24.72431 -23.46116 -22.80155 -22.61279 -21.41184 -20.05152 -19.62818 -18.93553 -18.07189 -17.34648 -17.05825 -16.94806 -16.66378 -16.53938 -16.43894 -16.00446 -15.87770 -15.52148 -15.23676 -14.97456 -14.88403 -14.68239 -14.33451 -14.20557 -13.86565 -13.64472 -13.24602 -13.03171 -12.83811 -12.51189 -12.36007 -12.20233 -12.05741 -11.91702 -11.51360 -10.95332 -10.60883 -9.74863 -9.22386 -9.14927 -8.53895 -8.52213 -6.24754 -0.18479 0.29443 0.47718 0.53276 1.28365 1.32259 1.53102 1.79955 2.16266 2.26270 2.55565 2.73868 2.90051 3.03806 3.32810 3.41620 3.61756 3.98762 3.99618 4.06725 4.18192 4.22689 4.28889 4.40361 4.54450 4.68024 4.79776 4.91041 5.08211 5.12122 5.18427 5.24427 5.26375 5.37463 5.48085 5.65696 5.72614 5.78488 5.83154 6.08437 6.11829 6.74039 6.81430 7.52136 8.57679 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.009313 B = 0.007327 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3005.803696 B = 3820.334492 C = 5567.225921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.024 3.976 3 Si 0.955 3.045 4 H -0.280 1.280 5 H -0.271 1.271 6 H -0.243 1.243 7 C -0.396 4.396 8 H 0.081 0.919 9 O -0.209 6.209 10 C 0.176 3.824 11 C -0.279 4.279 12 C 0.135 3.865 13 F -0.147 7.147 14 C -0.210 4.210 15 C -0.021 4.021 16 C -0.132 4.132 17 C 0.039 3.961 18 C -0.177 4.177 19 C 0.107 3.893 20 F -0.140 7.140 21 C -0.166 4.166 22 C 0.106 3.894 23 N -0.581 5.581 24 H 0.434 0.566 25 C 0.064 3.936 26 C -0.215 4.215 27 C -0.115 4.115 28 H 0.284 0.716 29 H 0.120 0.880 30 H 0.164 0.836 31 H 0.169 0.831 32 H 0.146 0.854 33 H 0.158 0.842 34 H 0.210 0.790 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.997 1.557 5.547 17.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.176 4.176 3 Si 0.778 3.222 4 H -0.206 1.206 5 H -0.196 1.196 6 H -0.166 1.166 7 C -0.472 4.472 8 H 0.098 0.902 9 O -0.114 6.114 10 C 0.124 3.876 11 C -0.299 4.299 12 C 0.116 3.884 13 F -0.126 7.126 14 C -0.229 4.229 15 C -0.039 4.039 16 C -0.134 4.134 17 C 0.038 3.962 18 C -0.197 4.197 19 C 0.086 3.914 20 F -0.119 7.119 21 C -0.187 4.187 22 C -0.002 4.002 23 N -0.186 5.186 24 H 0.274 0.726 25 C -0.061 4.061 26 C -0.240 4.240 27 C -0.120 4.120 28 H 0.094 0.906 29 H 0.137 0.863 30 H 0.182 0.818 31 H 0.186 0.814 32 H 0.163 0.837 33 H 0.176 0.824 34 H 0.227 0.773 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 16.911 2.004 5.577 17.919 hybrid contribution -0.842 0.521 -0.371 1.057 sum 16.069 2.525 5.206 17.079 Atomic orbital electron populations 1.69734 1.06912 1.29542 1.49561 1.25099 0.95585 1.01643 0.95249 0.85410 0.80035 0.77915 0.78837 1.20621 1.19614 1.16584 1.20676 0.78092 0.95966 1.52432 0.90166 1.83605 1.20892 1.26038 1.80846 1.19108 0.91469 0.84544 0.92472 1.21066 1.01259 0.91976 1.15640 1.17680 0.90224 0.80385 1.00157 1.91436 1.78167 1.49147 1.93855 1.20994 0.90274 1.01053 1.10565 1.21036 1.00790 0.88346 0.93719 1.18067 0.88674 0.94100 1.12523 1.17766 0.93538 0.92396 0.92489 1.21002 0.99481 0.98499 1.00677 1.16973 0.91823 0.95535 0.87048 1.91467 1.66685 1.94425 1.59333 1.19922 1.02820 1.02160 0.93811 1.17814 0.98512 0.93205 0.90702 1.41682 1.36182 1.21641 1.19106 0.72551 1.22337 0.92538 0.92199 0.99076 1.21716 1.04503 1.01209 0.96522 1.19442 0.99967 0.95443 0.97132 0.90594 0.86259 0.81806 0.81374 0.83664 0.82446 0.77309 0.85440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.93 13.96 21.61 0.30 -53.63 16 2 C 0.02 1.35 5.49 84.83 0.47 1.81 16 3 Si 0.96 44.71 28.62 68.60 1.96 46.67 16 4 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 5 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.24 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.40 -22.53 9.94 67.91 0.68 -21.86 16 8 H 0.08 4.85 5.44 -2.91 -0.02 4.84 16 9 O -0.21 -10.75 7.80 -21.33 -0.17 -10.92 16 10 C 0.18 7.90 6.62 22.83 0.15 8.05 16 11 C -0.28 -12.34 9.13 22.40 0.20 -12.14 16 12 C 0.13 4.98 7.30 22.41 0.16 5.15 16 13 F -0.15 -5.36 17.26 44.97 0.78 -4.58 16 14 C -0.21 -6.16 10.01 22.31 0.22 -5.94 16 15 C -0.02 -0.61 9.73 22.48 0.22 -0.40 16 16 C -0.13 -4.89 5.24 -19.94 -0.10 -4.99 16 17 C 0.04 1.38 4.96 -19.91 -0.10 1.28 16 18 C -0.18 -5.55 9.69 22.55 0.22 -5.34 16 19 C 0.11 3.10 7.27 22.34 0.16 3.26 16 20 F -0.14 -3.90 17.25 44.97 0.78 -3.13 16 21 C -0.17 -4.39 10.03 22.45 0.23 -4.17 16 22 C 0.11 3.10 7.27 38.99 0.28 3.38 16 23 N -0.58 -13.05 6.08 -187.57 -1.14 -14.19 16 24 H 0.43 5.98 8.96 -92.71 -0.83 5.15 16 25 C 0.06 1.59 11.82 83.02 0.98 2.57 16 26 C -0.21 -7.24 10.95 23.47 0.26 -6.99 16 27 C -0.11 -4.03 5.86 -20.03 -0.12 -4.15 16 28 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 29 H 0.12 5.87 5.64 -2.91 -0.02 5.85 16 30 H 0.16 3.58 8.06 -2.91 -0.02 3.56 16 31 H 0.17 3.59 8.06 -2.91 -0.02 3.57 16 32 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16 33 H 0.16 3.10 8.06 -2.91 -0.02 3.07 16 34 H 0.21 3.30 8.06 -2.91 -0.02 3.27 16 35 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -68.46 320.31 6.77 -61.70 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.35 Total: 18.53 kcal Atomic # 6 Polarization: -44.36 SS G_CDS: 3.91 Total: -40.45 kcal Atomic # 7 Polarization: -66.99 SS G_CDS: -0.84 Total: -67.82 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: -0.17 Total: -10.92 kcal Atomic # 9 Polarization: -9.26 SS G_CDS: 1.55 Total: -7.71 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.96 Total: 46.67 kcal Total: -68.46 6.77 -61.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240032790.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.640 kcal (2) G-P(sol) polarization free energy of solvation -68.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds