Wall clock time and date at job start Tue Mar 31 2020 11:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31090 * 1 3 3 Si 1.86805 * 119.99582 * 2 1 4 4 H 1.48500 * 109.47060 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46760 * 299.99531 * 3 2 1 6 6 H 1.48497 * 109.47259 * 59.99578 * 3 2 1 7 7 C 1.39661 * 120.00532 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00130 * 180.02562 * 7 2 1 9 9 C 1.40968 * 119.99759 * 0.02562 * 7 2 1 10 10 C 1.38995 * 126.93186 * 0.02562 * 9 7 2 11 11 N 1.35599 * 109.23564 * 180.02562 * 10 9 7 12 12 H 0.96996 * 124.70541 * 180.02562 * 11 10 9 13 13 C 1.38169 * 110.59200 * 359.97438 * 11 10 9 14 14 C 1.39184 * 132.73110 * 180.02562 * 13 11 10 15 15 C 1.38007 * 120.24381 * 180.02562 * 14 13 11 16 16 C 1.38355 * 120.77903 * 359.67592 * 15 14 13 17 17 C 1.39179 * 120.09446 * 0.62501 * 16 15 14 18 18 C 1.48101 * 120.28263 * 179.68001 * 17 16 15 19 19 C 1.39683 * 120.10149 * 89.72323 * 18 17 16 20 20 F 1.35104 * 120.05313 * 359.95605 * 19 18 17 21 21 C 1.38118 * 119.89801 * 180.22844 * 19 18 17 22 22 C 1.38830 * 120.09839 * 359.49434 * 21 19 18 23 23 O 1.35857 * 119.89539 * 180.22792 * 22 21 19 24 24 C 1.38823 * 120.20395 * 0.51159 * 22 21 19 25 25 C 1.38111 * 120.10616 * 359.73873 * 24 22 21 26 26 F 1.35106 * 120.05346 * 179.97438 * 25 24 22 27 27 C 1.40210 * 107.89290 * 0.02562 * 13 11 10 28 28 H 0.96993 * 120.00336 * 0.02562 * 1 2 3 29 29 H 1.08001 * 125.38322 * 359.97438 * 10 9 7 30 30 H 1.07997 * 119.87495 * 359.97438 * 14 13 11 31 31 H 1.08004 * 119.60907 * 180.02562 * 15 14 13 32 32 H 1.08003 * 119.94940 * 180.32577 * 16 15 14 33 33 H 1.07998 * 119.95354 * 179.75011 * 21 19 18 34 34 H 0.96697 * 114.00036 * 270.27751 * 23 22 21 35 35 H 1.08001 * 119.94954 * 179.72570 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2448 1.6178 0.0000 4 1 3.7048 1.3466 0.0006 5 1 1.8860 2.3964 -1.2126 6 1 1.8860 2.3966 1.2124 7 6 2.0093 -1.2094 0.0005 8 1 3.0894 -1.2094 0.0010 9 6 1.3045 -2.4303 0.0005 10 6 -0.0752 -2.5981 -0.0005 11 7 -0.3641 -3.9230 0.0005 12 1 -1.2609 -4.2927 -0.0003 13 6 0.7961 -4.6733 0.0015 14 6 1.0339 -6.0447 0.0023 15 6 2.3274 -6.5259 0.0038 16 6 3.4054 -5.6587 -0.0020 17 6 3.1944 -4.2830 0.0035 18 6 4.3453 -3.3509 0.0044 19 6 4.8908 -2.9101 -1.2036 20 9 4.3698 -3.3340 -2.3759 21 6 5.9671 -2.0446 -1.1979 22 6 6.5002 -1.6045 0.0061 23 8 7.5560 -0.7496 0.0069 24 6 5.9615 -2.0400 1.2091 25 6 4.8885 -2.9095 1.2133 26 9 4.3653 -3.3331 2.3847 27 6 1.8824 -3.7869 0.0019 28 1 -0.4850 0.8400 -0.0004 29 1 -0.8023 -1.7995 -0.0010 30 1 0.2031 -6.7347 0.0024 31 1 2.5001 -7.5920 0.0040 32 1 4.4121 -6.0499 -0.0061 33 1 6.3921 -1.7064 -2.1313 34 1 8.4176 -1.1886 0.0076 35 1 6.3823 -1.6985 2.1434 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241122823.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:19 Heat of formation + Delta-G solvation = -54.234403 kcal Electronic energy + Delta-G solvation = -26094.530289 eV Core-core repulsion = 22079.816563 eV Total energy + Delta-G solvation = -4014.713726 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.51268 -48.49514 -39.83578 -39.19995 -36.64409 -35.53672 -33.52616 -31.66876 -30.13201 -29.36157 -28.06551 -27.35014 -24.79941 -23.02727 -22.59330 -21.03091 -20.64316 -19.46697 -18.76762 -17.42371 -17.08368 -16.50862 -15.94860 -15.60933 -15.49141 -15.33641 -15.10485 -14.79149 -14.44621 -14.37354 -14.25277 -13.46468 -13.24759 -13.14901 -13.09281 -12.52944 -11.98821 -11.75646 -11.46846 -11.26656 -11.21206 -11.09031 -10.88671 -10.87958 -10.53024 -10.42570 -9.75715 -9.70208 -9.41787 -8.49964 -8.38159 -8.23610 -7.10801 -6.64756 -6.48304 -3.98646 1.16546 1.27128 1.98285 2.55692 3.09297 3.19563 3.27726 3.50711 3.84670 4.11611 4.19471 4.52272 4.54157 4.62415 4.73947 5.01080 5.13040 5.20621 5.59798 5.65474 5.71253 5.89674 5.92499 6.17464 6.22915 6.28752 6.30578 6.40717 6.58625 6.73668 6.94455 7.08071 7.16352 7.30850 7.38042 7.55686 7.60217 7.83625 7.99286 8.28394 8.65707 9.01556 9.14638 9.19496 10.49735 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.009755 B = 0.008550 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.723788 B = 3274.082536 C = 5156.564898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.057 3.943 3 Si 0.904 3.096 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.408 4.408 8 H 0.070 0.930 9 C 0.015 3.985 10 C -0.088 4.088 11 N -0.590 5.590 12 H 0.395 0.605 13 C 0.084 3.916 14 C -0.141 4.141 15 C -0.118 4.118 16 C -0.161 4.161 17 C -0.009 4.009 18 C -0.084 4.084 19 C 0.164 3.836 20 F -0.121 7.121 21 C -0.196 4.196 22 C 0.154 3.846 23 O -0.489 6.489 24 C -0.196 4.196 25 C 0.164 3.836 26 F -0.121 7.121 27 C -0.101 4.101 28 H 0.272 0.728 29 H 0.194 0.806 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.144 0.856 34 H 0.391 0.609 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.479 -5.600 0.008 11.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.153 4.153 3 Si 0.730 3.270 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.441 4.441 8 H 0.088 0.912 9 C 0.010 3.990 10 C -0.212 4.212 11 N -0.191 5.191 12 H 0.228 0.772 13 C -0.027 4.027 14 C -0.163 4.163 15 C -0.137 4.137 16 C -0.182 4.182 17 C -0.009 4.009 18 C -0.086 4.086 19 C 0.144 3.856 20 F -0.099 7.099 21 C -0.216 4.216 22 C 0.109 3.891 23 O -0.299 6.299 24 C -0.215 4.215 25 C 0.144 3.856 26 F -0.099 7.099 27 C -0.108 4.108 28 H 0.083 0.917 29 H 0.210 0.790 30 H 0.121 0.879 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.162 0.838 34 H 0.247 0.753 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 8.704 -4.922 0.008 10.000 hybrid contribution 0.027 0.255 0.000 0.257 sum 8.732 -4.667 0.008 9.901 Atomic orbital electron populations 1.69442 1.07079 1.27694 1.42243 1.25572 0.94779 1.00494 0.94447 0.86264 0.80912 0.81575 0.78226 1.18461 1.20227 1.20232 1.18765 0.93872 0.88966 1.42517 0.91174 1.18060 0.90609 0.89106 1.01253 1.23419 0.98135 0.81946 1.17716 1.41564 1.05149 1.06692 1.65734 0.77165 1.18128 0.87169 0.91889 1.05561 1.19889 0.96606 0.91525 1.08244 1.20275 0.91669 0.98032 1.03739 1.20497 0.97883 0.91473 1.08314 1.17596 0.89619 0.91313 1.02421 1.18771 0.97707 1.01387 0.90749 1.17018 0.92662 0.95145 0.80774 1.91535 1.85645 1.88057 1.44635 1.21201 0.99562 1.01177 0.99627 1.17594 0.90521 0.90478 0.90541 1.84847 1.15699 1.33035 1.96353 1.21192 0.99610 1.01104 0.99634 1.17015 0.92679 0.95120 0.80789 1.91535 1.85556 1.88074 1.44709 1.19321 0.90253 0.94959 1.06233 0.91703 0.79011 0.87875 0.87133 0.87540 0.83803 0.75297 0.83803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.95 10.33 55.53 0.57 -21.38 16 2 C 0.06 1.49 5.49 -17.34 -0.10 1.40 16 3 Si 0.90 20.36 29.56 -169.99 -5.02 15.33 16 4 H -0.26 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.41 -11.20 9.07 -38.02 -0.34 -11.55 16 8 H 0.07 1.89 5.76 -52.48 -0.30 1.59 16 9 C 0.01 0.40 6.10 -104.83 -0.64 -0.24 16 10 C -0.09 -2.25 10.89 -15.61 -0.17 -2.42 16 11 N -0.59 -12.91 5.99 -9.81 -0.06 -12.97 16 12 H 0.39 7.02 8.96 -40.82 -0.37 6.65 16 13 C 0.08 1.89 7.23 -83.92 -0.61 1.28 16 14 C -0.14 -2.70 10.06 -39.31 -0.40 -3.09 16 15 C -0.12 -2.12 10.00 -39.62 -0.40 -2.51 16 16 C -0.16 -3.11 9.78 -39.19 -0.38 -3.49 16 17 C -0.01 -0.20 4.60 -104.74 -0.48 -0.68 16 18 C -0.08 -1.71 3.55 -104.77 -0.37 -2.09 16 19 C 0.16 3.11 7.00 -39.09 -0.27 2.83 16 20 F -0.12 -2.41 16.82 2.25 0.04 -2.38 16 21 C -0.20 -3.12 9.95 -39.41 -0.39 -3.51 16 22 C 0.15 2.30 6.70 -39.15 -0.26 2.03 16 23 O -0.49 -5.97 13.49 -19.29 -0.26 -6.23 16 24 C -0.20 -3.12 9.95 -39.41 -0.39 -3.51 16 25 C 0.16 3.11 7.00 -39.09 -0.27 2.83 16 26 F -0.12 -2.41 16.82 2.25 0.04 -2.38 16 27 C -0.10 -2.50 6.19 -104.64 -0.65 -3.14 16 28 H 0.27 6.63 8.30 -40.82 -0.34 6.29 16 29 H 0.19 5.03 5.68 -52.49 -0.30 4.73 16 30 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 32 H 0.11 1.78 8.06 -52.48 -0.42 1.35 16 33 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 34 H 0.39 2.41 9.06 45.56 0.41 2.83 16 35 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 315.94 15.07 4.76 4.76 Total: -1.00 -31.28 315.94 -7.86 -39.14 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -1.80 Total: 11.94 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -6.13 Total: -25.84 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.52 Total: -34.35 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.26 Total: -6.23 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.08 Total: -4.75 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.28 -7.86 -39.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241122823.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.094 kcal (2) G-P(sol) polarization free energy of solvation -31.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds