Wall clock time and date at job start Tue Mar 31 2020 11:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31090 * 1 3 3 Si 1.86805 * 119.99582 * 2 1 4 4 H 1.48500 * 109.47060 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46760 * 299.99531 * 3 2 1 6 6 H 1.48497 * 109.47259 * 59.99578 * 3 2 1 7 7 C 1.39661 * 120.00532 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00130 * 180.02562 * 7 2 1 9 9 C 1.40968 * 119.99759 * 0.02562 * 7 2 1 10 10 C 1.38995 * 126.93186 * 0.02562 * 9 7 2 11 11 N 1.35599 * 109.23564 * 180.02562 * 10 9 7 12 12 H 0.96996 * 124.70541 * 180.02562 * 11 10 9 13 13 C 1.38169 * 110.59200 * 359.97438 * 11 10 9 14 14 C 1.39184 * 132.73110 * 180.02562 * 13 11 10 15 15 C 1.38007 * 120.24381 * 180.02562 * 14 13 11 16 16 C 1.38355 * 120.77903 * 359.67592 * 15 14 13 17 17 C 1.39179 * 120.09446 * 0.62501 * 16 15 14 18 18 C 1.48101 * 120.28263 * 179.68001 * 17 16 15 19 19 C 1.39683 * 120.10149 * 89.72323 * 18 17 16 20 20 F 1.35104 * 120.05313 * 359.95605 * 19 18 17 21 21 C 1.38118 * 119.89801 * 180.22844 * 19 18 17 22 22 C 1.38830 * 120.09839 * 359.49434 * 21 19 18 23 23 O 1.35857 * 119.89539 * 180.22792 * 22 21 19 24 24 C 1.38823 * 120.20395 * 0.51159 * 22 21 19 25 25 C 1.38111 * 120.10616 * 359.73873 * 24 22 21 26 26 F 1.35106 * 120.05346 * 179.97438 * 25 24 22 27 27 C 1.40210 * 107.89290 * 0.02562 * 13 11 10 28 28 H 0.96993 * 120.00336 * 0.02562 * 1 2 3 29 29 H 1.08001 * 125.38322 * 359.97438 * 10 9 7 30 30 H 1.07997 * 119.87495 * 359.97438 * 14 13 11 31 31 H 1.08004 * 119.60907 * 180.02562 * 15 14 13 32 32 H 1.08003 * 119.94940 * 180.32577 * 16 15 14 33 33 H 1.07998 * 119.95354 * 179.75011 * 21 19 18 34 34 H 0.96697 * 114.00036 * 270.27751 * 23 22 21 35 35 H 1.08001 * 119.94954 * 179.72570 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2448 1.6178 0.0000 4 1 3.7048 1.3466 0.0006 5 1 1.8860 2.3964 -1.2126 6 1 1.8860 2.3966 1.2124 7 6 2.0093 -1.2094 0.0005 8 1 3.0894 -1.2094 0.0010 9 6 1.3045 -2.4303 0.0005 10 6 -0.0752 -2.5981 -0.0005 11 7 -0.3641 -3.9230 0.0005 12 1 -1.2609 -4.2927 -0.0003 13 6 0.7961 -4.6733 0.0015 14 6 1.0339 -6.0447 0.0023 15 6 2.3274 -6.5259 0.0038 16 6 3.4054 -5.6587 -0.0020 17 6 3.1944 -4.2830 0.0035 18 6 4.3453 -3.3509 0.0044 19 6 4.8908 -2.9101 -1.2036 20 9 4.3698 -3.3340 -2.3759 21 6 5.9671 -2.0446 -1.1979 22 6 6.5002 -1.6045 0.0061 23 8 7.5560 -0.7496 0.0069 24 6 5.9615 -2.0400 1.2091 25 6 4.8885 -2.9095 1.2133 26 9 4.3653 -3.3331 2.3847 27 6 1.8824 -3.7869 0.0019 28 1 -0.4850 0.8400 -0.0004 29 1 -0.8023 -1.7995 -0.0010 30 1 0.2031 -6.7347 0.0024 31 1 2.5001 -7.5920 0.0040 32 1 4.4121 -6.0499 -0.0061 33 1 6.3921 -1.7064 -2.1313 34 1 8.4176 -1.1886 0.0076 35 1 6.3823 -1.6985 2.1434 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241122823.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:19 Heat of formation + Delta-G solvation = -73.353364 kcal Electronic energy + Delta-G solvation = -26095.359349 eV Core-core repulsion = 22079.816563 eV Total energy + Delta-G solvation = -4015.542787 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.98172 -49.96163 -41.47990 -40.44666 -37.98442 -36.99156 -35.39846 -33.18640 -31.43860 -31.06008 -29.66620 -28.96027 -26.64933 -24.43529 -23.93412 -22.56433 -22.28648 -21.30130 -19.99139 -19.02377 -18.44874 -17.80858 -17.75133 -17.23810 -16.95106 -16.75050 -16.59534 -16.27605 -16.01099 -15.85157 -15.63586 -14.95990 -14.82294 -14.77795 -14.45474 -14.37846 -13.47625 -13.14707 -13.10487 -12.99069 -12.94758 -12.60459 -12.53715 -12.10496 -12.03290 -11.94720 -11.63779 -11.40548 -11.29711 -10.09230 -9.83242 -9.58656 -8.77839 -8.46113 -8.40504 -5.95972 -0.12922 -0.06220 0.38219 0.96078 1.32039 1.36254 1.49719 2.20990 2.27133 2.28551 2.63581 2.87756 3.01375 3.28401 3.41231 3.58802 3.59506 3.92746 3.96356 4.25636 4.38292 4.51755 4.56559 4.75144 4.82415 4.87936 4.96152 4.98116 5.04539 5.21992 5.31421 5.38669 5.61127 5.65548 5.79270 5.92969 5.96012 6.20265 6.50730 6.77947 6.78922 7.13645 7.21643 7.40245 8.58739 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.009755 B = 0.008550 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.723788 B = 3274.082536 C = 5156.564898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.013 3.987 3 Si 0.964 3.036 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.434 4.434 8 H 0.064 0.936 9 C -0.024 4.024 10 C -0.103 4.103 11 N -0.586 5.586 12 H 0.412 0.588 13 C 0.071 3.929 14 C -0.142 4.142 15 C -0.105 4.105 16 C -0.161 4.161 17 C -0.027 4.027 18 C -0.109 4.109 19 C 0.142 3.858 20 F -0.135 7.135 21 C -0.189 4.189 22 C 0.173 3.827 23 O -0.488 6.488 24 C -0.189 4.189 25 C 0.142 3.858 26 F -0.135 7.135 27 C -0.142 4.142 28 H 0.277 0.723 29 H 0.181 0.819 30 H 0.140 0.860 31 H 0.158 0.842 32 H 0.133 0.867 33 H 0.170 0.830 34 H 0.421 0.579 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.596 -6.431 0.006 13.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.194 4.194 3 Si 0.787 3.213 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.082 0.918 9 C -0.030 4.030 10 C -0.228 4.228 11 N -0.189 5.189 12 H 0.248 0.752 13 C -0.040 4.040 14 C -0.164 4.164 15 C -0.124 4.124 16 C -0.181 4.181 17 C -0.027 4.027 18 C -0.111 4.111 19 C 0.122 3.878 20 F -0.113 7.113 21 C -0.208 4.208 22 C 0.127 3.873 23 O -0.302 6.302 24 C -0.208 4.208 25 C 0.122 3.878 26 F -0.113 7.113 27 C -0.149 4.149 28 H 0.087 0.913 29 H 0.197 0.803 30 H 0.157 0.843 31 H 0.175 0.825 32 H 0.151 0.849 33 H 0.187 0.813 34 H 0.283 0.717 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 10.833 -5.794 0.007 12.285 hybrid contribution -0.490 0.365 0.000 0.610 sum 10.343 -5.429 0.007 11.682 Atomic orbital electron populations 1.69525 1.07979 1.28539 1.42930 1.26332 0.95662 1.03220 0.94147 0.85368 0.79382 0.77878 0.78626 1.18685 1.19375 1.19387 1.18937 0.93746 0.90031 1.44049 0.91784 1.18471 0.91672 0.90494 1.02326 1.23198 0.97698 0.83331 1.18561 1.41361 1.06107 1.05492 1.65972 0.75198 1.18601 0.86653 0.93270 1.05456 1.20344 0.98526 0.90385 1.07121 1.20866 0.90623 1.00221 1.00687 1.20980 0.99864 0.90690 1.06584 1.17964 0.89389 0.93001 1.02382 1.18855 0.97987 1.02437 0.91806 1.17268 0.93959 0.96564 0.80016 1.91485 1.86138 1.88462 1.45260 1.21484 0.98260 0.99789 1.01286 1.17534 0.90850 0.89221 0.89679 1.84789 1.16656 1.32706 1.96092 1.21476 0.98316 0.99726 1.01297 1.17265 0.93971 0.96538 0.80031 1.91486 1.86051 1.88478 1.45334 1.19622 0.92297 0.94491 1.08506 0.91251 0.80292 0.84267 0.82484 0.84924 0.81256 0.71719 0.81268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.92 10.33 21.79 0.23 -46.70 16 2 C 0.01 0.71 5.49 85.15 0.47 1.18 16 3 Si 0.96 42.42 29.56 68.60 2.03 44.45 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.43 -24.88 9.07 23.28 0.21 -24.66 16 8 H 0.06 3.61 5.76 -2.91 -0.02 3.59 16 9 C -0.02 -1.38 6.10 -20.00 -0.12 -1.50 16 10 C -0.10 -5.52 10.89 84.29 0.92 -4.60 16 11 N -0.59 -26.26 5.99 -184.94 -1.11 -27.37 16 12 H 0.41 14.83 8.96 -92.71 -0.83 14.00 16 13 C 0.07 3.21 7.23 38.85 0.28 3.49 16 14 C -0.14 -5.13 10.06 22.44 0.23 -4.90 16 15 C -0.11 -3.44 10.00 22.24 0.22 -3.21 16 16 C -0.16 -5.96 9.78 22.52 0.22 -5.74 16 17 C -0.03 -1.20 4.60 -19.94 -0.09 -1.29 16 18 C -0.11 -4.49 3.55 -19.96 -0.07 -4.56 16 19 C 0.14 5.38 7.00 22.59 0.16 5.54 16 20 F -0.14 -5.52 16.82 44.97 0.76 -4.76 16 21 C -0.19 -5.70 9.95 22.38 0.22 -5.48 16 22 C 0.17 4.72 6.70 22.55 0.15 4.87 16 23 O -0.49 -9.97 13.49 -91.94 -1.24 -11.21 16 24 C -0.19 -5.71 9.95 22.38 0.22 -5.48 16 25 C 0.14 5.38 7.00 22.59 0.16 5.54 16 26 F -0.14 -5.52 16.82 44.97 0.76 -4.76 16 27 C -0.14 -7.27 6.19 -19.88 -0.12 -7.40 16 28 H 0.28 13.91 8.30 -92.71 -0.77 13.14 16 29 H 0.18 9.96 5.68 -2.91 -0.02 9.94 16 30 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 31 H 0.16 3.69 8.06 -2.91 -0.02 3.66 16 32 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 33 H 0.17 4.11 8.06 -2.91 -0.02 4.09 16 34 H 0.42 3.27 9.06 -74.06 -0.67 2.60 16 35 H 0.17 4.12 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -71.66 315.94 4.17 -67.50 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: -0.30 Total: 31.06 kcal Atomic # 6 Polarization: -51.26 SS G_CDS: 3.05 Total: -48.21 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -0.88 Total: -74.07 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: -1.24 Total: -11.21 kcal Atomic # 9 Polarization: -11.04 SS G_CDS: 1.51 Total: -9.53 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -71.66 4.17 -67.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241122823.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.857 kcal (2) G-P(sol) polarization free energy of solvation -71.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds