Wall clock time and date at job start Tue Mar 31 2020 11:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39054 * 120.56540 * 323.64111 * 3 2 1 5 5 C 1.39443 * 119.80146 * 180.27311 * 4 3 2 6 6 C 1.47888 * 119.50498 * 179.73200 * 5 4 3 7 7 C 1.39597 * 120.17647 * 309.98229 * 6 5 4 8 8 C 1.37877 * 119.90671 * 179.97438 * 7 6 5 9 9 C 1.38501 * 120.27798 * 0.02562 * 8 7 6 10 10 C 1.38186 * 120.36554 * 359.97438 * 9 8 7 11 11 C 1.38571 * 120.07867 * 359.74508 * 10 9 8 12 12 O 1.35787 * 120.13735 * 180.24925 * 11 10 9 13 13 C 1.42898 * 117.00053 * 0.28101 * 12 11 10 14 14 F 1.39909 * 109.47041 * 299.99901 * 13 12 11 15 15 F 1.39900 * 109.47211 * 59.99530 * 13 12 11 16 16 C 1.40045 * 120.99168 * 359.71397 * 5 4 3 17 17 C 1.35968 * 121.18264 * 359.97438 * 16 5 4 18 18 C 1.41059 * 120.11890 * 0.02562 * 17 16 5 19 19 C 1.40417 * 120.48616 * 179.97438 * 18 17 16 20 20 H 1.07993 * 120.00069 * 205.42124 * 19 18 17 21 21 C 1.40286 * 119.99392 * 25.42186 * 19 18 17 22 22 N 1.30643 * 120.00082 * 16.91944 * 21 19 18 23 23 Si 1.86805 * 119.99752 * 196.91861 * 21 19 18 24 24 H 1.48501 * 109.47033 * 265.18436 * 23 21 19 25 25 H 1.48503 * 109.46755 * 25.17878 * 23 21 19 26 26 H 1.48493 * 109.47142 * 145.17951 * 23 21 19 27 27 H 1.08001 * 120.10033 * 359.96554 * 4 3 2 28 28 H 1.07999 * 120.04641 * 359.97438 * 7 6 5 29 29 H 1.08000 * 119.86035 * 179.97438 * 8 7 6 30 30 H 1.08008 * 119.82260 * 179.97438 * 9 8 7 31 31 H 1.08000 * 119.95992 * 179.97438 * 10 9 8 32 32 H 1.08993 * 109.47170 * 180.02562 * 13 12 11 33 33 H 1.07998 * 119.40635 * 180.02562 * 16 5 4 34 34 H 1.08008 * 119.93923 * 180.02562 * 17 16 5 35 35 H 0.97004 * 119.99629 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2755 -0.9633 0.7098 5 6 4.6698 -0.9443 0.7035 6 6 5.4157 -1.9690 1.4655 7 6 5.0959 -2.2215 2.8007 8 6 5.7946 -3.1785 3.5057 9 6 6.8135 -3.8907 2.8950 10 6 7.1395 -3.6500 1.5739 11 6 6.4432 -2.6957 0.8496 12 8 6.7592 -2.4617 -0.4501 13 6 7.8178 -3.2408 -1.0108 14 9 8.9958 -3.0137 -0.2908 15 9 7.4844 -4.5978 -0.9433 16 6 5.3744 0.0304 -0.0140 17 6 4.7234 0.9878 -0.7269 18 6 3.3133 1.0140 -0.7540 19 6 2.6331 1.9996 -1.4872 20 1 1.6307 2.2865 -1.2057 21 6 3.2556 2.6114 -2.5855 22 7 4.3059 2.0592 -3.1321 23 14 2.5827 4.2156 -3.2662 24 1 1.6621 3.9268 -4.3951 25 1 1.8448 4.9359 -2.1976 26 1 3.7062 5.0592 -3.7470 27 1 2.7468 -1.7214 1.2685 28 1 4.3024 -1.6681 3.2807 29 1 5.5468 -3.3730 4.5388 30 1 7.3562 -4.6384 3.4544 31 1 7.9354 -4.2089 1.1044 32 1 7.9678 -2.9544 -2.0517 33 1 6.4543 0.0209 -0.0015 34 1 5.2869 1.7297 -1.2734 35 1 4.7360 2.4822 -3.8918 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241952203.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:13 Heat of formation + Delta-G solvation = -81.948908 kcal Electronic energy + Delta-G solvation = -24909.239415 eV Core-core repulsion = 20893.323898 eV Total energy + Delta-G solvation = -4015.915518 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.27174 -47.26043 -39.78344 -37.72935 -36.98810 -35.13908 -34.29975 -31.66082 -30.21705 -29.78586 -28.96005 -26.08782 -25.51520 -22.80578 -22.32485 -21.69345 -20.61167 -18.78798 -18.06848 -17.81868 -17.74205 -16.98711 -15.85935 -15.55643 -15.45882 -14.57319 -14.48200 -14.32049 -13.99380 -13.77684 -13.68544 -13.53273 -13.25058 -12.93644 -12.72797 -12.68305 -12.42414 -12.09163 -11.88150 -11.79041 -11.71864 -11.47463 -11.32367 -11.19096 -11.01872 -10.62258 -10.55869 -9.93543 -9.85490 -9.60031 -8.66664 -8.20687 -7.76644 -7.42372 -7.20142 -4.75878 1.49785 1.60829 2.20209 2.61847 2.80671 2.87665 2.91949 3.00841 3.55383 3.63574 3.88279 3.95337 4.21091 4.40978 4.41304 4.73906 5.01714 5.07643 5.27680 5.35920 5.44237 5.62019 5.66102 5.83910 5.96066 6.20721 6.33507 6.46638 6.56603 6.62181 6.73921 6.82959 6.90095 7.00281 7.20263 7.34259 7.52041 7.64039 7.78470 7.84387 8.18647 8.35944 8.52077 8.80313 9.66013 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.014893 B = 0.004191 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.581950 B = 6679.074932 C = 7918.406214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.301 3.699 3 C -0.191 4.191 4 C -0.001 4.001 5 C -0.200 4.200 6 C -0.002 4.002 7 C -0.097 4.097 8 C -0.141 4.141 9 C -0.110 4.110 10 C -0.189 4.189 11 C 0.096 3.904 12 O -0.299 6.299 13 C 0.407 3.593 14 F -0.204 7.204 15 F -0.204 7.204 16 C -0.041 4.041 17 C -0.168 4.168 18 C 0.157 3.843 19 C -0.421 4.421 20 H 0.087 0.913 21 C 0.075 3.925 22 N -0.755 5.755 23 Si 0.915 3.085 24 H -0.265 1.265 25 H -0.255 1.255 26 H -0.269 1.269 27 H 0.100 0.900 28 H 0.130 0.870 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.126 0.874 32 H 0.178 0.822 33 H 0.094 0.906 34 H 0.125 0.875 35 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.395 -6.260 3.416 12.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.009 4.009 3 C -0.197 4.197 4 C -0.022 4.022 5 C -0.201 4.201 6 C -0.003 4.003 7 C -0.115 4.115 8 C -0.159 4.159 9 C -0.128 4.128 10 C -0.207 4.207 11 C 0.053 3.947 12 O -0.216 6.216 13 C 0.316 3.684 14 F -0.186 7.186 15 F -0.186 7.186 16 C -0.060 4.060 17 C -0.187 4.187 18 C 0.151 3.849 19 C -0.448 4.448 20 H 0.105 0.895 21 C -0.149 4.149 22 N -0.377 5.377 23 Si 0.738 3.262 24 H -0.189 1.189 25 H -0.178 1.178 26 H -0.194 1.194 27 H 0.118 0.882 28 H 0.148 0.852 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.194 0.806 33 H 0.112 0.888 34 H 0.143 0.857 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.745 -6.131 3.091 11.118 hybrid contribution 0.569 0.276 -0.375 0.735 sum 9.314 -5.855 2.716 11.331 Atomic orbital electron populations 1.81025 1.12715 1.11598 1.13553 1.25759 0.92683 0.91355 0.91073 1.16729 0.83200 1.03681 1.16056 1.20492 0.92418 0.94602 0.94693 1.17584 0.91623 1.01063 1.09841 1.18338 0.93787 0.95415 0.92744 1.21206 0.99835 0.97886 0.92546 1.20992 0.97335 0.97682 0.99925 1.20796 0.98006 0.99954 0.94066 1.21368 1.02358 1.00573 0.96445 1.19014 0.97027 0.96478 0.82219 1.86770 1.50432 1.58994 1.25360 1.23426 0.74746 0.74627 0.95572 1.93071 1.49932 1.94030 1.81594 1.93071 1.92103 1.36109 1.97293 1.20382 0.97641 0.93640 0.94386 1.20871 0.93646 1.01259 1.02891 1.18484 0.91621 0.87724 0.87055 1.19810 1.01693 1.14835 1.08453 0.89471 1.26158 0.93922 0.98790 0.96009 1.69723 1.15672 1.35764 1.16501 0.86139 0.79795 0.80261 0.79997 1.18949 1.17798 1.19360 0.88220 0.85213 0.86257 0.86331 0.85627 0.80554 0.88811 0.85715 0.89702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.23 18.54 41.84 0.78 -11.45 16 2 C 0.30 7.02 14.29 -22.47 -0.32 6.70 16 3 C -0.19 -4.34 5.93 -104.27 -0.62 -4.95 16 4 C 0.00 -0.02 9.18 -38.83 -0.36 -0.38 16 5 C -0.20 -3.97 5.29 -104.82 -0.55 -4.53 16 6 C 0.00 -0.04 5.46 -104.74 -0.57 -0.61 16 7 C -0.10 -1.48 9.47 -39.21 -0.37 -1.85 16 8 C -0.14 -1.87 10.03 -39.62 -0.40 -2.27 16 9 C -0.11 -1.46 10.03 -39.50 -0.40 -1.86 16 10 C -0.19 -2.80 8.25 -39.48 -0.33 -3.13 16 11 C 0.10 1.61 6.37 -38.75 -0.25 1.36 16 12 O -0.30 -4.83 8.75 -19.07 -0.17 -5.00 16 13 C 0.41 4.89 5.98 101.05 0.60 5.49 16 14 F -0.20 -2.58 15.57 2.25 0.04 -2.54 16 15 F -0.20 -2.63 15.60 2.25 0.04 -2.60 16 16 C -0.04 -0.85 8.63 -39.72 -0.34 -1.19 16 17 C -0.17 -3.76 8.62 -39.33 -0.34 -4.10 16 18 C 0.16 3.72 5.73 -104.61 -0.60 3.12 16 19 C -0.42 -10.07 8.55 -37.99 -0.32 -10.39 16 20 H 0.09 2.11 7.38 -52.49 -0.39 1.72 16 21 C 0.08 1.66 5.16 -17.29 -0.09 1.57 16 22 N -0.76 -16.77 10.96 55.57 0.61 -16.16 16 23 Si 0.92 16.71 29.59 -169.99 -5.03 11.68 16 24 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 25 H -0.25 -4.71 7.11 56.52 0.40 -4.31 16 26 H -0.27 -4.69 7.11 56.52 0.40 -4.29 16 27 H 0.10 1.85 8.01 -52.49 -0.42 1.43 16 28 H 0.13 1.82 8.03 -52.49 -0.42 1.40 16 29 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 31 H 0.13 1.73 5.10 -52.49 -0.27 1.47 16 32 H 0.18 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.09 1.81 7.62 -52.49 -0.40 1.41 16 34 H 0.13 2.83 6.20 -52.48 -0.33 2.51 16 35 H 0.29 5.76 8.29 -40.82 -0.34 5.43 16 LS Contribution 322.19 15.07 4.86 4.86 Total: -1.00 -26.57 322.19 -6.76 -33.34 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -2.62 Total: 4.89 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -5.25 Total: -17.00 kcal Atomic # 7 Polarization: -29.00 SS G_CDS: 1.38 Total: -27.61 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.17 Total: -5.00 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.07 Total: -5.14 kcal Atomic # 14 Polarization: 16.71 SS G_CDS: -5.03 Total: 11.68 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -26.57 -6.76 -33.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241952203.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.612 kcal (2) G-P(sol) polarization free energy of solvation -26.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds