Wall clock time and date at job start Tue Mar 31 2020 11:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39054 * 120.56540 * 323.64111 * 3 2 1 5 5 C 1.39443 * 119.80146 * 180.27311 * 4 3 2 6 6 C 1.47888 * 119.50498 * 179.73200 * 5 4 3 7 7 C 1.39597 * 120.17647 * 309.98229 * 6 5 4 8 8 C 1.37877 * 119.90671 * 179.97438 * 7 6 5 9 9 C 1.38501 * 120.27798 * 0.02562 * 8 7 6 10 10 C 1.38186 * 120.36554 * 359.97438 * 9 8 7 11 11 C 1.38571 * 120.07867 * 359.74508 * 10 9 8 12 12 O 1.35787 * 120.13735 * 180.24925 * 11 10 9 13 13 C 1.42898 * 117.00053 * 0.28101 * 12 11 10 14 14 F 1.39909 * 109.47041 * 299.99901 * 13 12 11 15 15 F 1.39900 * 109.47211 * 59.99530 * 13 12 11 16 16 C 1.40045 * 120.99168 * 359.71397 * 5 4 3 17 17 C 1.35968 * 121.18264 * 359.97438 * 16 5 4 18 18 C 1.41059 * 120.11890 * 0.02562 * 17 16 5 19 19 C 1.40417 * 120.48616 * 179.97438 * 18 17 16 20 20 H 1.07993 * 120.00069 * 205.42124 * 19 18 17 21 21 C 1.40286 * 119.99392 * 25.42186 * 19 18 17 22 22 N 1.30643 * 120.00082 * 16.91944 * 21 19 18 23 23 Si 1.86805 * 119.99752 * 196.91861 * 21 19 18 24 24 H 1.48501 * 109.47033 * 265.18436 * 23 21 19 25 25 H 1.48503 * 109.46755 * 25.17878 * 23 21 19 26 26 H 1.48493 * 109.47142 * 145.17951 * 23 21 19 27 27 H 1.08001 * 120.10033 * 359.96554 * 4 3 2 28 28 H 1.07999 * 120.04641 * 359.97438 * 7 6 5 29 29 H 1.08000 * 119.86035 * 179.97438 * 8 7 6 30 30 H 1.08008 * 119.82260 * 179.97438 * 9 8 7 31 31 H 1.08000 * 119.95992 * 179.97438 * 10 9 8 32 32 H 1.08993 * 109.47170 * 180.02562 * 13 12 11 33 33 H 1.07998 * 119.40635 * 180.02562 * 16 5 4 34 34 H 1.08008 * 119.93923 * 180.02562 * 17 16 5 35 35 H 0.97004 * 119.99629 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2755 -0.9633 0.7098 5 6 4.6698 -0.9443 0.7035 6 6 5.4157 -1.9690 1.4655 7 6 5.0959 -2.2215 2.8007 8 6 5.7946 -3.1785 3.5057 9 6 6.8135 -3.8907 2.8950 10 6 7.1395 -3.6500 1.5739 11 6 6.4432 -2.6957 0.8496 12 8 6.7592 -2.4617 -0.4501 13 6 7.8178 -3.2408 -1.0108 14 9 8.9958 -3.0137 -0.2908 15 9 7.4844 -4.5978 -0.9433 16 6 5.3744 0.0304 -0.0140 17 6 4.7234 0.9878 -0.7269 18 6 3.3133 1.0140 -0.7540 19 6 2.6331 1.9996 -1.4872 20 1 1.6307 2.2865 -1.2057 21 6 3.2556 2.6114 -2.5855 22 7 4.3059 2.0592 -3.1321 23 14 2.5827 4.2156 -3.2662 24 1 1.6621 3.9268 -4.3951 25 1 1.8448 4.9359 -2.1976 26 1 3.7062 5.0592 -3.7470 27 1 2.7468 -1.7214 1.2685 28 1 4.3024 -1.6681 3.2807 29 1 5.5468 -3.3730 4.5388 30 1 7.3562 -4.6384 3.4544 31 1 7.9354 -4.2089 1.1044 32 1 7.9678 -2.9544 -2.0517 33 1 6.4543 0.0209 -0.0015 34 1 5.2869 1.7297 -1.2734 35 1 4.7360 2.4822 -3.8918 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241952203.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:12 Heat of formation + Delta-G solvation = -93.104763 kcal Electronic energy + Delta-G solvation = -24909.723169 eV Core-core repulsion = 20893.323898 eV Total energy + Delta-G solvation = -4016.399272 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.24402 -48.23506 -40.99036 -39.32471 -38.17633 -36.96924 -35.92399 -33.11521 -31.72664 -31.12096 -30.44074 -27.38497 -26.80237 -24.23629 -23.83749 -22.94787 -22.11425 -19.94354 -19.44578 -19.19615 -18.81131 -18.36524 -17.24506 -16.88539 -16.71504 -15.97837 -15.80431 -15.60479 -15.30226 -15.06875 -14.81798 -14.59458 -14.57740 -14.52030 -14.42765 -13.82624 -13.75775 -13.53373 -13.49154 -13.34876 -13.24887 -12.89087 -12.76637 -12.52295 -12.50355 -12.02861 -11.90837 -11.55814 -11.47962 -11.21078 -9.96674 -9.50446 -9.43073 -8.96891 -8.81943 -6.50607 0.24975 0.46899 0.48523 1.05633 1.37331 1.48029 1.53421 1.80598 2.03590 2.13332 2.39029 2.60318 2.64332 2.88930 3.53943 3.58618 3.68404 3.78635 3.94874 3.99868 4.25517 4.32885 4.41163 4.54934 4.63957 4.69964 4.93649 5.05578 5.13803 5.21607 5.35087 5.44514 5.51725 5.61332 5.76304 5.87483 5.91147 6.10055 6.12064 6.30052 6.46208 6.62808 6.79645 6.97036 8.05473 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.014893 B = 0.004191 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.581950 B = 6679.074932 C = 7918.406214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C 0.306 3.694 3 C -0.210 4.210 4 C -0.004 4.004 5 C -0.183 4.183 6 C -0.040 4.040 7 C -0.097 4.097 8 C -0.137 4.137 9 C -0.099 4.099 10 C -0.199 4.199 11 C 0.085 3.915 12 O -0.324 6.324 13 C 0.404 3.596 14 F -0.208 7.208 15 F -0.209 7.209 16 C -0.037 4.037 17 C -0.179 4.179 18 C 0.136 3.864 19 C -0.456 4.456 20 H 0.072 0.928 21 C 0.045 3.955 22 N -0.778 5.778 23 Si 0.978 3.022 24 H -0.264 1.264 25 H -0.262 1.262 26 H -0.251 1.251 27 H 0.118 0.882 28 H 0.137 0.863 29 H 0.154 0.846 30 H 0.153 0.847 31 H 0.134 0.866 32 H 0.221 0.779 33 H 0.106 0.894 34 H 0.118 0.882 35 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.951 -7.339 4.313 14.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.209 5.209 2 C -0.002 4.002 3 C -0.216 4.216 4 C -0.025 4.025 5 C -0.185 4.185 6 C -0.041 4.041 7 C -0.115 4.115 8 C -0.155 4.155 9 C -0.117 4.117 10 C -0.217 4.217 11 C 0.042 3.958 12 O -0.241 6.241 13 C 0.315 3.685 14 F -0.190 7.190 15 F -0.191 7.191 16 C -0.056 4.056 17 C -0.198 4.198 18 C 0.130 3.870 19 C -0.483 4.483 20 H 0.090 0.910 21 C -0.177 4.177 22 N -0.400 5.400 23 Si 0.798 3.202 24 H -0.189 1.189 25 H -0.186 1.186 26 H -0.174 1.174 27 H 0.136 0.864 28 H 0.155 0.845 29 H 0.171 0.829 30 H 0.170 0.830 31 H 0.152 0.848 32 H 0.237 0.763 33 H 0.124 0.876 34 H 0.135 0.865 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.320 -7.232 3.996 13.220 hybrid contribution 0.256 0.403 -0.522 0.707 sum 10.576 -6.828 3.474 13.059 Atomic orbital electron populations 1.80996 1.13101 1.12382 1.14458 1.25942 0.92869 0.90835 0.90588 1.16917 0.82953 1.04568 1.17197 1.20688 0.92870 0.94414 0.94532 1.17840 0.91526 1.00712 1.08402 1.18354 0.95325 0.96468 0.93931 1.21403 1.00071 0.98263 0.91809 1.21356 0.96464 0.96382 1.01309 1.21275 0.97330 0.99603 0.93463 1.21576 1.02552 1.00316 0.97261 1.19188 0.96962 0.96893 0.82758 1.86730 1.51878 1.60210 1.25329 1.24103 0.73576 0.73985 0.96879 1.93058 1.49960 1.94006 1.81947 1.93055 1.92131 1.36609 1.97343 1.20544 0.98282 0.93105 0.93710 1.20831 0.93230 1.01945 1.03832 1.18737 0.92370 0.88219 0.87640 1.19881 1.01605 1.16664 1.10171 0.91025 1.26790 0.94112 1.01183 0.95567 1.69711 1.16316 1.36883 1.17048 0.85232 0.79491 0.76642 0.78866 1.18925 1.18585 1.17439 0.86424 0.84477 0.82862 0.82978 0.84823 0.76332 0.87601 0.86460 0.88566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -25.96 18.54 19.00 0.35 -25.61 16 2 C 0.31 14.70 14.29 88.33 1.26 15.96 16 3 C -0.21 -9.82 5.93 -19.64 -0.12 -9.94 16 4 C 0.00 -0.18 9.18 22.76 0.21 0.03 16 5 C -0.18 -7.26 5.29 -19.99 -0.11 -7.36 16 6 C -0.04 -1.37 5.46 -19.94 -0.11 -1.48 16 7 C -0.10 -2.75 9.47 22.51 0.21 -2.54 16 8 C -0.14 -3.11 10.03 22.25 0.22 -2.89 16 9 C -0.10 -2.23 10.03 22.32 0.22 -2.01 16 10 C -0.20 -5.39 8.25 22.34 0.18 -5.20 16 11 C 0.09 2.74 6.37 22.81 0.15 2.88 16 12 O -0.32 -10.13 8.75 -91.16 -0.80 -10.93 16 13 C 0.40 8.97 5.98 113.37 0.68 9.65 16 14 F -0.21 -4.85 15.57 44.97 0.70 -4.15 16 15 F -0.21 -5.04 15.60 44.97 0.70 -4.34 16 16 C -0.04 -1.55 8.63 22.18 0.19 -1.36 16 17 C -0.18 -8.26 8.62 22.43 0.19 -8.06 16 18 C 0.14 6.68 5.73 -19.86 -0.11 6.57 16 19 C -0.46 -22.71 8.55 23.30 0.20 -22.51 16 20 H 0.07 3.66 7.38 -2.91 -0.02 3.64 16 21 C 0.05 2.04 5.16 85.37 0.44 2.48 16 22 N -0.78 -35.03 10.96 21.88 0.24 -34.79 16 23 Si 0.98 34.54 29.59 68.60 2.03 36.57 16 24 H -0.26 -9.26 7.11 99.48 0.71 -8.56 16 25 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 26 H -0.25 -8.05 7.11 99.48 0.71 -7.34 16 27 H 0.12 4.32 8.01 -2.91 -0.02 4.30 16 28 H 0.14 3.58 8.03 -2.91 -0.02 3.55 16 29 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 30 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 31 H 0.13 3.36 5.10 -2.91 -0.01 3.34 16 32 H 0.22 2.83 8.14 -2.39 -0.02 2.81 16 33 H 0.11 4.07 7.62 -2.91 -0.02 4.04 16 34 H 0.12 5.50 6.20 -2.91 -0.02 5.48 16 35 H 0.30 11.96 8.29 -92.71 -0.77 11.19 16 Total: -1.00 -58.63 322.19 8.11 -50.52 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 1.16 Total: 18.51 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: 3.72 Total: -25.78 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: 0.59 Total: -60.40 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -0.80 Total: -10.93 kcal Atomic # 9 Polarization: -9.90 SS G_CDS: 1.40 Total: -8.50 kcal Atomic # 14 Polarization: 34.54 SS G_CDS: 2.03 Total: 36.57 kcal Total: -58.63 8.11 -50.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241952203.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.584 kcal (2) G-P(sol) polarization free energy of solvation -58.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds