Wall clock time and date at job start Tue Mar 31 2020 11:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39053 * 120.56770 * 344.25660 * 3 2 1 5 5 C 1.39431 * 119.80472 * 180.02562 * 4 3 2 6 6 C 1.47924 * 119.50527 * 179.97438 * 5 4 3 7 7 C 1.39681 * 120.08295 * 359.72561 * 6 5 4 8 8 C 1.37778 * 119.91086 * 179.71908 * 7 6 5 9 9 C 1.38958 * 120.08128 * 0.55310 * 8 7 6 10 10 O 1.35809 * 119.91088 * 179.74003 * 9 8 7 11 11 C 1.42905 * 117.00005 * 359.97438 * 10 9 8 12 12 F 1.39900 * 109.46730 * 299.99369 * 11 10 9 13 13 F 1.39895 * 109.47177 * 59.99533 * 11 10 9 14 14 C 1.38964 * 120.17689 * 359.71919 * 9 8 7 15 15 C 1.37768 * 120.08390 * 0.02562 * 14 9 8 16 16 C 1.40033 * 120.99007 * 359.97438 * 5 4 3 17 17 C 1.35969 * 121.19048 * 359.74293 * 16 5 4 18 18 C 1.41066 * 120.11190 * 0.51961 * 17 16 5 19 19 C 1.40408 * 120.48282 * 179.76475 * 18 17 16 20 20 H 1.08004 * 119.99654 * 154.41185 * 19 18 17 21 21 C 1.40267 * 120.00337 * 334.41373 * 19 18 17 22 22 N 1.30655 * 120.00146 * 334.68744 * 21 19 18 23 23 Si 1.86805 * 120.00358 * 154.68163 * 21 19 18 24 24 H 1.48498 * 109.47164 * 180.02562 * 23 21 19 25 25 H 1.48504 * 109.46936 * 300.00275 * 23 21 19 26 26 H 1.48496 * 109.46967 * 60.00026 * 23 21 19 27 27 H 1.07998 * 120.09878 * 0.04335 * 4 3 2 28 28 H 1.07999 * 120.04621 * 359.97438 * 7 6 5 29 29 H 1.07995 * 119.95634 * 180.25273 * 8 7 6 30 30 H 1.09002 * 109.47054 * 180.02562 * 11 10 9 31 31 H 1.08000 * 119.95491 * 179.97438 * 14 9 8 32 32 H 1.08001 * 120.04385 * 180.02562 * 15 14 9 33 33 H 1.08005 * 119.40141 * 180.02562 * 16 5 4 34 34 H 1.07998 * 119.94211 * 180.26377 * 17 16 5 35 35 H 0.97006 * 119.99489 * 354.18941 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2756 -1.1514 0.3249 5 6 4.6698 -1.1328 0.3203 6 6 5.4160 -2.3619 0.6675 7 6 4.7255 -3.5291 1.0025 8 6 5.4240 -4.6735 1.3196 9 6 6.8136 -4.6644 1.3178 10 8 7.4986 -5.7930 1.6361 11 6 6.7265 -6.9504 1.9624 12 9 5.9196 -6.6750 3.0716 13 9 5.9196 -7.2950 0.8728 14 6 7.5041 -3.5037 0.9906 15 6 6.8127 -2.3568 0.6672 16 6 5.3743 0.0321 -0.0079 17 6 4.7233 1.1794 -0.3374 18 6 3.3131 1.2164 -0.3429 19 6 2.6329 2.3984 -0.6771 20 1 1.6319 2.3499 -1.0797 21 6 3.2533 3.6421 -0.4881 22 7 4.1945 3.7731 0.4086 23 14 2.7342 5.1112 -1.5186 24 1 3.5368 6.2980 -1.1283 25 1 2.9598 4.8123 -2.9556 26 1 1.2936 5.3908 -1.2915 27 1 2.7470 -2.0580 0.5796 28 1 3.6456 -3.5355 1.0088 29 1 4.8909 -5.5774 1.5747 30 1 7.3949 -7.7790 2.1966 31 1 8.5841 -3.5005 0.9907 32 1 7.3500 -1.4552 0.4127 33 1 6.4542 0.0176 -0.0037 34 1 5.2868 2.0651 -0.5914 35 1 4.4061 3.0347 1.0010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242440683.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:15 Heat of formation + Delta-G solvation = -99.670228 kcal Electronic energy + Delta-G solvation = -24120.048479 eV Core-core repulsion = 20103.364507 eV Total energy + Delta-G solvation = -4016.683972 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.26855 -48.27392 -40.98304 -39.84451 -38.30804 -37.10104 -36.03464 -32.72459 -32.44481 -31.45629 -30.05368 -27.62102 -26.37663 -24.88004 -23.82431 -23.01143 -22.01436 -20.30151 -19.94147 -19.24915 -18.83401 -18.55950 -17.30478 -16.74655 -16.49518 -16.35129 -15.68476 -15.58141 -15.36983 -14.98093 -14.91014 -14.86731 -14.72924 -14.60836 -14.32640 -14.18811 -13.88256 -13.82859 -13.57229 -13.45032 -13.32694 -13.04865 -12.85178 -12.39547 -12.25924 -12.08656 -11.98002 -11.56987 -11.40997 -11.08410 -10.13718 -9.98731 -9.75762 -9.42307 -8.77432 -6.62982 0.00039 0.33840 0.41054 1.04544 1.49958 1.62527 1.71479 1.79190 1.91685 2.21084 2.23563 2.54350 2.61990 2.90718 3.43900 3.52136 3.55881 3.74398 3.83322 3.87153 4.06595 4.15559 4.28683 4.36890 4.49716 4.67316 4.86499 4.90156 5.04022 5.14374 5.22730 5.28574 5.41164 5.51453 5.61452 5.63454 5.71750 5.89627 6.04977 6.12533 6.16919 6.47322 6.59769 6.84024 7.77005 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.025008 B = 0.002868 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.365072 B = 9760.038409 C =10610.437981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C 0.301 3.699 3 C -0.209 4.209 4 C 0.002 3.998 5 C -0.197 4.197 6 C -0.028 4.028 7 C -0.113 4.113 8 C -0.186 4.186 9 C 0.067 3.933 10 O -0.326 6.326 11 C 0.403 3.597 12 F -0.213 7.213 13 F -0.213 7.213 14 C -0.123 4.123 15 C -0.104 4.104 16 C -0.032 4.032 17 C -0.226 4.226 18 C 0.113 3.887 19 C -0.497 4.497 20 H 0.070 0.930 21 C 0.012 3.988 22 N -0.769 5.769 23 Si 1.110 2.890 24 H -0.260 1.260 25 H -0.257 1.257 26 H -0.267 1.267 27 H 0.122 0.878 28 H 0.127 0.873 29 H 0.133 0.867 30 H 0.237 0.763 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.134 0.866 34 H 0.111 0.889 35 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.854 -14.095 1.937 18.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.203 5.203 2 C -0.007 4.007 3 C -0.215 4.215 4 C -0.019 4.019 5 C -0.198 4.198 6 C -0.028 4.028 7 C -0.132 4.132 8 C -0.204 4.204 9 C 0.025 3.975 10 O -0.244 6.244 11 C 0.314 3.686 12 F -0.195 7.195 13 F -0.195 7.195 14 C -0.141 4.141 15 C -0.122 4.122 16 C -0.051 4.051 17 C -0.245 4.245 18 C 0.107 3.893 19 C -0.522 4.522 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.388 5.388 23 Si 0.926 3.074 24 H -0.184 1.184 25 H -0.181 1.181 26 H -0.192 1.192 27 H 0.140 0.860 28 H 0.145 0.855 29 H 0.150 0.850 30 H 0.252 0.748 31 H 0.173 0.827 32 H 0.166 0.834 33 H 0.151 0.849 34 H 0.129 0.871 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.641 -12.551 1.719 16.544 hybrid contribution -0.776 -1.673 0.454 1.900 sum 9.864 -14.224 2.173 17.446 Atomic orbital electron populations 1.81007 1.13084 1.10810 1.15440 1.25952 0.92922 0.90947 0.90914 1.16885 0.83009 0.98065 1.23538 1.20891 0.93551 0.94861 0.92569 1.17982 0.91560 0.93838 1.16441 1.18880 0.93483 0.92352 0.98126 1.21124 1.00259 0.91923 0.99845 1.21455 0.92964 1.00144 1.05850 1.19018 0.90580 0.86982 1.00961 1.86542 1.36202 1.18442 1.83198 1.24301 0.82732 0.89302 0.72245 1.93072 1.76966 1.94617 1.54852 1.93070 1.76952 1.92132 1.57321 1.20561 1.01228 0.89767 1.02546 1.21263 0.92754 0.98496 0.99658 1.20782 0.99650 0.91195 0.93450 1.20782 0.92903 0.99128 1.11650 1.18781 0.92479 0.90920 0.87072 1.20966 1.03154 0.93274 1.34853 0.91160 1.28512 0.91555 1.04393 0.96649 1.70502 1.21330 1.36802 1.10203 0.83070 0.77345 0.71528 0.75452 1.18402 1.18100 1.19210 0.86043 0.85480 0.84958 0.74783 0.82719 0.83386 0.84874 0.87147 0.88925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -25.52 18.54 19.00 0.35 -25.17 16 2 C 0.30 14.31 14.30 88.33 1.26 15.58 16 3 C -0.21 -9.52 5.93 -19.64 -0.12 -9.63 16 4 C 0.00 0.07 9.12 22.75 0.21 0.28 16 5 C -0.20 -7.29 5.88 -19.99 -0.12 -7.40 16 6 C -0.03 -0.91 5.88 -20.01 -0.12 -1.02 16 7 C -0.11 -3.48 9.41 22.51 0.21 -3.27 16 8 C -0.19 -5.18 8.23 22.33 0.18 -5.00 16 9 C 0.07 1.74 6.49 22.62 0.15 1.89 16 10 O -0.33 -6.70 10.42 -91.40 -0.95 -7.65 16 11 C 0.40 5.91 5.98 113.37 0.68 6.58 16 12 F -0.21 -4.12 15.57 44.97 0.70 -3.42 16 13 F -0.21 -4.10 15.57 44.97 0.70 -3.40 16 14 C -0.12 -3.00 9.97 22.33 0.22 -2.77 16 15 C -0.10 -2.82 9.41 22.51 0.21 -2.61 16 16 C -0.03 -1.19 9.30 22.18 0.21 -0.98 16 17 C -0.23 -9.68 7.88 22.44 0.18 -9.50 16 18 C 0.11 5.36 5.46 -19.86 -0.11 5.25 16 19 C -0.50 -24.23 8.48 23.29 0.20 -24.03 16 20 H 0.07 3.56 7.44 -2.91 -0.02 3.54 16 21 C 0.01 0.52 4.94 85.36 0.42 0.94 16 22 N -0.77 -35.65 12.31 21.88 0.27 -35.38 16 23 Si 1.11 38.51 30.01 68.60 2.06 40.57 16 24 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 25 H -0.26 -8.39 7.11 99.48 0.71 -7.68 16 26 H -0.27 -9.06 7.11 99.48 0.71 -8.35 16 27 H 0.12 4.31 6.13 -2.91 -0.02 4.29 16 28 H 0.13 3.74 6.14 -2.91 -0.02 3.72 16 29 H 0.13 3.45 5.07 -2.91 -0.01 3.43 16 30 H 0.24 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.16 2.89 8.06 -2.91 -0.02 2.86 16 32 H 0.15 3.45 6.12 -2.91 -0.02 3.44 16 33 H 0.13 4.02 6.08 -2.91 -0.02 4.00 16 34 H 0.11 4.81 6.50 -2.91 -0.02 4.79 16 35 H 0.30 14.14 6.68 -92.70 -0.62 13.52 16 Total: -1.00 -58.15 316.78 8.13 -50.02 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 1.33 Total: 20.14 kcal Atomic # 6 Polarization: -39.37 SS G_CDS: 3.67 Total: -35.70 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: 0.62 Total: -60.55 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.95 Total: -7.65 kcal Atomic # 9 Polarization: -8.22 SS G_CDS: 1.40 Total: -6.82 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.06 Total: 40.57 kcal Total: -58.15 8.13 -50.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242440683.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.651 kcal (2) G-P(sol) polarization free energy of solvation -58.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds