Wall clock time and date at job start Tue Mar 31 2020 11:11:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13606 * 1
3 3 C 1.43194 * 179.97438 * 2 1
4 4 C 1.39596 * 120.45301 * 206.26742 * 3 2 1
5 5 C 1.37698 * 120.19054 * 180.02562 * 4 3 2
6 6 C 1.39836 * 121.16839 * 359.97028 * 5 4 3
7 7 C 1.48262 * 119.54272 * 179.97438 * 6 5 4
8 8 C 1.39437 * 120.06562 * 0.02562 * 7 6 5
9 9 C 1.37878 * 119.93238 * 180.02562 * 8 7 6
10 10 C 1.38864 * 120.06554 * 359.97438 * 9 8 7
11 11 O 1.35846 * 119.92657 * 180.02562 * 10 9 8
12 12 C 1.42907 * 116.99986 * 179.97438 * 11 10 9
13 13 F 1.39898 * 109.46900 * 299.99867 * 12 11 10
14 14 F 1.39904 * 109.46870 * 59.99712 * 12 11 10
15 15 C 1.38856 * 120.13986 * 0.26971 * 10 9 8
16 16 C 1.37878 * 120.06489 * 359.45899 * 15 10 9
17 17 C 1.38641 * 120.92236 * 0.26209 * 6 5 4
18 18 C 1.40588 * 119.73047 * 359.51277 * 17 6 5
19 19 C 1.40846 * 120.55192 * 180.22201 * 18 17 6
20 20 H 1.07996 * 120.00070 * 204.64440 * 19 18 17
21 21 C 1.40230 * 119.99766 * 24.65005 * 19 18 17
22 22 N 1.30660 * 120.00279 * 17.29401 * 21 19 18
23 23 Si 1.86806 * 119.99741 * 197.28907 * 21 19 18
24 24 H 1.48506 * 109.46737 * 90.00249 * 23 21 19
25 25 H 1.48499 * 109.47169 * 209.99812 * 23 21 19
26 26 H 1.48493 * 109.47177 * 330.00454 * 23 21 19
27 27 H 1.08008 * 119.90784 * 0.02562 * 4 3 2
28 28 H 1.08002 * 119.41469 * 179.97438 * 5 4 3
29 29 H 1.08001 * 120.03588 * 359.97438 * 8 7 6
30 30 H 1.07998 * 119.96679 * 179.97438 * 9 8 7
31 31 H 1.09003 * 109.47297 * 179.97438 * 12 11 10
32 32 H 1.07993 * 119.96563 * 179.72332 * 15 10 9
33 33 H 1.08004 * 120.03366 * 180.29110 * 16 15 10
34 34 H 1.08000 * 120.13472 * 179.71986 * 17 6 5
35 35 H 0.97000 * 120.00062 * 184.65389 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1361 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.2750 1.0801 0.5326
5 6 4.6520 1.0753 0.5293
6 6 5.3707 -0.0004 -0.0016
7 6 6.8529 0.0324 0.0129
8 6 7.5221 1.1298 0.5537
9 6 8.9005 1.1576 0.5653
10 6 9.6223 0.0941 0.0397
11 8 10.9804 0.1243 0.0532
12 6 11.6599 -1.0031 -0.5032
13 9 11.3026 -2.1574 0.2017
14 9 11.3003 -1.1475 -1.8475
15 6 8.9589 -0.9978 -0.5040
16 6 7.5806 -1.0340 -0.5135
17 6 4.7167 -1.0945 -0.5468
18 6 3.3113 -1.1318 -0.5590
19 6 2.6292 -2.2368 -1.1043
20 1 1.6224 -2.1196 -1.4770
21 6 3.2573 -3.4892 -1.1632
22 7 4.3121 -3.7262 -0.4293
23 14 2.5860 -4.8187 -2.2907
24 1 3.2314 -4.7094 -3.6237
25 1 2.8753 -6.1539 -1.7087
26 1 1.1179 -4.6495 -2.4362
27 1 2.7405 1.9215 0.9484
28 1 5.1864 1.9171 0.9442
29 1 6.9613 1.9574 0.9622
30 1 9.4194 2.0074 0.9836
31 1 12.7368 -0.8508 -0.4299
32 1 9.5230 -1.8213 -0.9160
33 1 7.0651 -1.8857 -0.9323
34 1 5.2845 -1.9163 -0.9575
35 1 4.7865 -4.5675 -0.5194
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001242441250.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:11:11
Heat of formation + Delta-G solvation = -80.874005 kcal
Electronic energy + Delta-G solvation = -24424.434611 eV
Core-core repulsion = 20408.565705 eV
Total energy + Delta-G solvation = -4015.868906 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 315.081 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-49.45829 -47.45144 -39.86759 -38.23162 -36.88297 -35.09176 -34.14328 -31.57337
-30.99335 -29.89053 -28.30315 -26.07148 -25.85070 -23.21893 -22.74233 -20.84320
-20.77731 -19.03122 -18.23847 -18.01610 -17.75450 -17.09998 -16.08639 -15.92857
-15.10224 -14.73407 -14.64376 -14.11775 -14.02124 -13.79478 -13.76564 -13.63320
-13.34601 -12.98913 -12.77734 -12.72307 -12.62743 -12.38664 -12.10273 -11.78081
-11.63635 -11.38085 -11.31595 -11.17885 -10.87763 -10.78380 -10.52368 -10.04263
-9.70378 -9.53012 -8.79214 -8.60949 -7.81736 -7.27321 -7.01177 -4.75921
1.18992 1.60398 2.33016 2.51260 2.62175 2.91256 2.95682 3.04003
3.35214 3.68130 3.81498 3.90235 4.15020 4.37060 4.42798 4.52459
4.97958 5.03926 5.27810 5.39391 5.41080 5.45850 5.62457 5.78635
5.95775 6.18246 6.28804 6.37275 6.53443 6.64099 6.70099 6.74126
6.89486 6.96422 7.15977 7.27384 7.45336 7.62304 7.72825 7.83845
8.16306 8.39054 8.49340 8.80612 9.71938
Molecular weight = 315.08amu
Principal moments of inertia in cm(-1)
A = 0.013919 B = 0.003903 C = 0.003132
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2011.228137 B = 7172.579677 C = 8938.640911
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.510 5.510
2 C 0.300 3.700
3 C -0.186 4.186
4 C -0.028 4.028
5 C -0.237 4.237
6 C -0.019 4.019
7 C -0.039 4.039
8 C -0.086 4.086
9 C -0.135 4.135
10 C 0.082 3.918
11 O -0.324 6.324
12 C 0.411 3.589
13 F -0.199 7.199
14 F -0.200 7.200
15 C -0.187 4.187
16 C -0.074 4.074
17 C -0.143 4.143
18 C 0.149 3.851
19 C -0.428 4.428
20 H 0.086 0.914
21 C 0.077 3.923
22 N -0.765 5.765
23 Si 0.913 3.087
24 H -0.261 1.261
25 H -0.273 1.273
26 H -0.257 1.257
27 H 0.100 0.900
28 H 0.101 0.899
29 H 0.136 0.864
30 H 0.129 0.871
31 H 0.177 0.823
32 H 0.128 0.872
33 H 0.137 0.863
34 H 0.132 0.868
35 H 0.291 0.709
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.002 2.776 -0.460 17.234
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.189 5.189
2 C -0.010 4.010
3 C -0.192 4.192
4 C -0.049 4.049
5 C -0.256 4.256
6 C -0.020 4.020
7 C -0.039 4.039
8 C -0.104 4.104
9 C -0.153 4.153
10 C 0.039 3.961
11 O -0.243 6.243
12 C 0.321 3.679
13 F -0.181 7.181
14 F -0.182 7.182
15 C -0.205 4.205
16 C -0.092 4.092
17 C -0.162 4.162
18 C 0.144 3.856
19 C -0.456 4.456
20 H 0.104 0.896
21 C -0.146 4.146
22 N -0.387 5.387
23 Si 0.736 3.264
24 H -0.186 1.186
25 H -0.197 1.197
26 H -0.181 1.181
27 H 0.119 0.881
28 H 0.119 0.881
29 H 0.154 0.846
30 H 0.147 0.853
31 H 0.193 0.807
32 H 0.146 0.854
33 H 0.155 0.845
34 H 0.149 0.851
35 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges 15.473 2.665 -0.283 15.704
hybrid contribution 0.243 -1.027 -0.545 1.188
sum 15.717 1.638 -0.828 15.823
Atomic orbital electron populations
1.81023 1.12756 1.11170 1.13966 1.25805 0.92744 0.91157 0.91284
1.16985 0.83240 1.01609 1.17332 1.20378 0.93597 0.95182 0.95695
1.20132 0.93033 0.99746 1.12702 1.18460 0.89478 0.95144 0.98927
1.19134 0.93636 0.93638 0.97513 1.21142 0.92516 0.98321 0.98380
1.20269 0.93481 0.97669 1.03887 1.18867 0.80173 0.96472 1.00540
1.86541 1.18942 1.41346 1.77424 1.23273 0.97036 0.74971 0.72632
1.93105 1.93859 1.52317 1.78828 1.93100 1.93814 1.95323 1.35947
1.21402 0.96170 0.98252 1.04699 1.21247 0.92389 0.98494 0.97096
1.21437 0.93791 0.97356 1.03576 1.18347 0.91194 0.89589 0.86470
1.19796 1.01613 0.92307 1.31870 0.89572 1.26079 0.94429 1.00029
0.94033 1.69713 1.15180 1.25448 1.28375 0.86185 0.81037 0.78794
0.80405 1.18609 1.19735 1.18084 0.88144 0.88071 0.84625 0.85340
0.80667 0.85382 0.84497 0.85074 0.89762
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.51 -12.30 18.54 41.84 0.78 -11.52 16
2 C 0.30 7.02 14.28 -22.47 -0.32 6.70 16
3 C -0.19 -4.22 5.95 -104.12 -0.62 -4.84 16
4 C -0.03 -0.56 9.74 -39.27 -0.38 -0.94 16
5 C -0.24 -4.51 9.37 -39.18 -0.37 -4.88 16
6 C -0.02 -0.38 5.86 -105.03 -0.62 -1.00 16
7 C -0.04 -0.70 5.88 -104.88 -0.62 -1.31 16
8 C -0.09 -1.30 9.41 -39.27 -0.37 -1.67 16
9 C -0.13 -1.87 9.97 -39.48 -0.39 -2.26 16
10 C 0.08 1.19 6.49 -39.12 -0.25 0.93 16
11 O -0.32 -3.91 10.43 -19.26 -0.20 -4.11 16
12 C 0.41 3.79 5.98 101.05 0.60 4.39 16
13 F -0.20 -2.25 15.59 2.25 0.04 -2.22 16
14 F -0.20 -2.22 15.56 2.25 0.04 -2.19 16
15 C -0.19 -2.90 8.24 -39.48 -0.33 -3.23 16
16 C -0.07 -1.28 9.40 -39.27 -0.37 -1.65 16
17 C -0.14 -3.19 8.06 -38.55 -0.31 -3.50 16
18 C 0.15 3.57 5.73 -104.68 -0.60 2.97 16
19 C -0.43 -10.36 8.58 -37.85 -0.32 -10.69 16
20 H 0.09 2.12 7.37 -52.49 -0.39 1.74 16
21 C 0.08 1.72 5.16 -17.30 -0.09 1.63 16
22 N -0.76 -17.20 10.95 55.56 0.61 -16.59 16
23 Si 0.91 17.10 29.60 -169.99 -5.03 12.07 16
24 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16
25 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16
26 H -0.26 -4.97 7.11 56.52 0.40 -4.56 16
27 H 0.10 1.76 8.06 -52.48 -0.42 1.33 16
28 H 0.10 1.63 6.09 -52.49 -0.32 1.31 16
29 H 0.14 1.80 6.13 -52.49 -0.32 1.48 16
30 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16
31 H 0.18 0.65 8.14 -51.93 -0.42 0.23 16
32 H 0.13 1.86 5.08 -52.49 -0.27 1.60 16
33 H 0.14 2.42 6.14 -52.48 -0.32 2.10 16
34 H 0.13 2.93 4.24 -52.49 -0.22 2.71 16
35 H 0.29 5.88 8.30 -40.82 -0.34 5.54 16
LS Contribution 317.66 15.07 4.79 4.79
Total: -1.00 -26.99 317.66 -6.59 -33.58
By element:
Atomic # 1 Polarization: 7.78 SS G_CDS: -2.24 Total: 5.54 kcal
Atomic # 6 Polarization: -13.98 SS G_CDS: -5.35 Total: -19.34 kcal
Atomic # 7 Polarization: -29.50 SS G_CDS: 1.38 Total: -28.11 kcal
Atomic # 8 Polarization: -3.91 SS G_CDS: -0.20 Total: -4.11 kcal
Atomic # 9 Polarization: -4.48 SS G_CDS: 0.07 Total: -4.41 kcal
Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal
Total LS contribution 4.79 Total: 4.79 kcal
Total: -26.99 -6.59 -33.58 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001242441250.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.294 kcal
(2) G-P(sol) polarization free energy of solvation -26.993 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.287 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.587 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.580 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.874 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds