Wall clock time and date at job start Tue Mar 31 2020 11:11:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13606 * 1
3 3 C 1.43194 * 179.97438 * 2 1
4 4 C 1.39596 * 120.45301 * 206.26742 * 3 2 1
5 5 C 1.37698 * 120.19054 * 180.02562 * 4 3 2
6 6 C 1.39836 * 121.16839 * 359.97028 * 5 4 3
7 7 C 1.48262 * 119.54272 * 179.97438 * 6 5 4
8 8 C 1.39437 * 120.06562 * 0.02562 * 7 6 5
9 9 C 1.37878 * 119.93238 * 180.02562 * 8 7 6
10 10 C 1.38864 * 120.06554 * 359.97438 * 9 8 7
11 11 O 1.35846 * 119.92657 * 180.02562 * 10 9 8
12 12 C 1.42907 * 116.99986 * 179.97438 * 11 10 9
13 13 F 1.39898 * 109.46900 * 299.99867 * 12 11 10
14 14 F 1.39904 * 109.46870 * 59.99712 * 12 11 10
15 15 C 1.38856 * 120.13986 * 0.26971 * 10 9 8
16 16 C 1.37878 * 120.06489 * 359.45899 * 15 10 9
17 17 C 1.38641 * 120.92236 * 0.26209 * 6 5 4
18 18 C 1.40588 * 119.73047 * 359.51277 * 17 6 5
19 19 C 1.40846 * 120.55192 * 180.22201 * 18 17 6
20 20 H 1.07996 * 120.00070 * 204.64440 * 19 18 17
21 21 C 1.40230 * 119.99766 * 24.65005 * 19 18 17
22 22 N 1.30660 * 120.00279 * 17.29401 * 21 19 18
23 23 Si 1.86806 * 119.99741 * 197.28907 * 21 19 18
24 24 H 1.48506 * 109.46737 * 90.00249 * 23 21 19
25 25 H 1.48499 * 109.47169 * 209.99812 * 23 21 19
26 26 H 1.48493 * 109.47177 * 330.00454 * 23 21 19
27 27 H 1.08008 * 119.90784 * 0.02562 * 4 3 2
28 28 H 1.08002 * 119.41469 * 179.97438 * 5 4 3
29 29 H 1.08001 * 120.03588 * 359.97438 * 8 7 6
30 30 H 1.07998 * 119.96679 * 179.97438 * 9 8 7
31 31 H 1.09003 * 109.47297 * 179.97438 * 12 11 10
32 32 H 1.07993 * 119.96563 * 179.72332 * 15 10 9
33 33 H 1.08004 * 120.03366 * 180.29110 * 16 15 10
34 34 H 1.08000 * 120.13472 * 179.71986 * 17 6 5
35 35 H 0.97000 * 120.00062 * 184.65389 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1361 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.2750 1.0801 0.5326
5 6 4.6520 1.0753 0.5293
6 6 5.3707 -0.0004 -0.0016
7 6 6.8529 0.0324 0.0129
8 6 7.5221 1.1298 0.5537
9 6 8.9005 1.1576 0.5653
10 6 9.6223 0.0941 0.0397
11 8 10.9804 0.1243 0.0532
12 6 11.6599 -1.0031 -0.5032
13 9 11.3026 -2.1574 0.2017
14 9 11.3003 -1.1475 -1.8475
15 6 8.9589 -0.9978 -0.5040
16 6 7.5806 -1.0340 -0.5135
17 6 4.7167 -1.0945 -0.5468
18 6 3.3113 -1.1318 -0.5590
19 6 2.6292 -2.2368 -1.1043
20 1 1.6224 -2.1196 -1.4770
21 6 3.2573 -3.4892 -1.1632
22 7 4.3121 -3.7262 -0.4293
23 14 2.5860 -4.8187 -2.2907
24 1 3.2314 -4.7094 -3.6237
25 1 2.8753 -6.1539 -1.7087
26 1 1.1179 -4.6495 -2.4362
27 1 2.7405 1.9215 0.9484
28 1 5.1864 1.9171 0.9442
29 1 6.9613 1.9574 0.9622
30 1 9.4194 2.0074 0.9836
31 1 12.7368 -0.8508 -0.4299
32 1 9.5230 -1.8213 -0.9160
33 1 7.0651 -1.8857 -0.9323
34 1 5.2845 -1.9163 -0.9575
35 1 4.7865 -4.5675 -0.5194
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001242441250.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:11:10
Heat of formation + Delta-G solvation = -93.092902 kcal
Electronic energy + Delta-G solvation = -24424.964462 eV
Core-core repulsion = 20408.565705 eV
Total energy + Delta-G solvation = -4016.398757 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 315.081 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-50.26248 -48.26968 -41.00928 -39.64415 -38.22167 -36.88548 -35.79423 -33.01644
-32.28710 -31.47409 -29.63898 -27.59831 -26.93889 -24.61363 -24.01067 -22.36920
-22.15173 -20.04822 -19.55970 -19.07946 -18.82952 -18.59435 -17.47612 -17.09309
-16.57695 -16.04724 -15.59423 -15.40713 -15.23330 -15.05312 -14.90913 -14.67680
-14.60985 -14.54244 -14.41592 -14.05772 -13.86925 -13.61376 -13.52296 -13.34687
-13.24030 -13.01132 -12.82173 -12.60783 -12.32761 -12.23172 -11.92390 -11.66140
-11.27450 -11.15150 -10.02902 -9.97139 -9.50292 -8.90316 -8.51937 -6.53388
-0.21313 0.40550 0.81033 1.01846 1.34756 1.46097 1.50927 1.68422
2.04281 2.12321 2.30538 2.62726 2.65911 2.93555 3.55673 3.61873
3.71775 3.74913 3.86083 3.87631 3.96619 4.30537 4.40026 4.44142
4.58176 4.81426 4.96025 4.99565 5.08399 5.16449 5.25742 5.30858
5.48455 5.57912 5.62574 5.80228 5.94881 6.09600 6.14467 6.17793
6.46822 6.65909 6.78734 6.97770 8.07831
Molecular weight = 315.08amu
Principal moments of inertia in cm(-1)
A = 0.013919 B = 0.003903 C = 0.003132
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2011.228137 B = 7172.579677 C = 8938.640911
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.532 5.532
2 C 0.305 3.695
3 C -0.210 4.210
4 C -0.026 4.026
5 C -0.227 4.227
6 C -0.012 4.012
7 C -0.071 4.071
8 C -0.075 4.075
9 C -0.132 4.132
10 C 0.090 3.910
11 O -0.323 6.323
12 C 0.403 3.597
13 F -0.213 7.213
14 F -0.213 7.213
15 C -0.197 4.197
16 C -0.086 4.086
17 C -0.170 4.170
18 C 0.129 3.871
19 C -0.467 4.467
20 H 0.067 0.933
21 C 0.047 3.953
22 N -0.787 5.787
23 Si 0.973 3.027
24 H -0.252 1.252
25 H -0.260 1.260
26 H -0.269 1.269
27 H 0.130 0.870
28 H 0.141 0.859
29 H 0.160 0.840
30 H 0.163 0.837
31 H 0.239 0.761
32 H 0.132 0.868
33 H 0.119 0.881
34 H 0.122 0.878
35 H 0.300 0.700
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.865 4.297 0.219 20.326
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.212 5.212
2 C -0.004 4.004
3 C -0.216 4.216
4 C -0.046 4.046
5 C -0.246 4.246
6 C -0.013 4.013
7 C -0.071 4.071
8 C -0.092 4.092
9 C -0.150 4.150
10 C 0.047 3.953
11 O -0.240 6.240
12 C 0.314 3.686
13 F -0.195 7.195
14 F -0.195 7.195
15 C -0.215 4.215
16 C -0.104 4.104
17 C -0.189 4.189
18 C 0.124 3.876
19 C -0.495 4.495
20 H 0.086 0.914
21 C -0.173 4.173
22 N -0.410 5.410
23 Si 0.794 3.206
24 H -0.177 1.177
25 H -0.184 1.184
26 H -0.193 1.193
27 H 0.148 0.852
28 H 0.159 0.841
29 H 0.178 0.822
30 H 0.181 0.819
31 H 0.255 0.745
32 H 0.150 0.850
33 H 0.137 0.863
34 H 0.140 0.860
35 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 18.355 4.194 0.402 18.833
hybrid contribution -0.396 -1.388 -0.696 1.603
sum 17.960 2.805 -0.294 18.180
Atomic orbital electron populations
1.80995 1.13237 1.11962 1.15028 1.26044 0.92995 0.90579 0.90733
1.17253 0.82936 1.02659 1.18783 1.20727 0.94203 0.95017 0.94661
1.20587 0.92813 1.00192 1.11010 1.18794 0.91204 0.94363 0.96912
1.19110 0.92351 0.95382 1.00276 1.21387 0.93309 0.97638 0.96912
1.20645 0.93066 0.98342 1.02923 1.19065 0.81559 0.95851 0.98874
1.86566 1.17342 1.42722 1.77394 1.24352 0.99137 0.73670 0.71468
1.93080 1.94137 1.53186 1.79113 1.93076 1.94084 1.95303 1.37004
1.21454 0.95454 0.99233 1.05367 1.21186 0.93297 0.98238 0.97701
1.21404 0.93266 0.98586 1.05671 1.18638 0.92149 0.90021 0.86795
1.19844 1.01383 0.93856 1.34381 0.91437 1.26684 0.94597 1.01135
0.94891 1.69720 1.15897 1.26367 1.29008 0.85307 0.79499 0.76766
0.79059 1.17651 1.18424 1.19349 0.85241 0.84126 0.82242 0.81911
0.74533 0.85017 0.86313 0.85999 0.88894
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.53 -26.29 18.54 19.00 0.35 -25.94 16
2 C 0.30 14.67 14.28 88.33 1.26 15.94 16
3 C -0.21 -9.74 5.95 -19.54 -0.12 -9.86 16
4 C -0.03 -0.99 9.74 22.47 0.22 -0.77 16
5 C -0.23 -8.16 9.37 22.53 0.21 -7.95 16
6 C -0.01 -0.47 5.86 -20.13 -0.12 -0.59 16
7 C -0.07 -2.46 5.88 -20.03 -0.12 -2.57 16
8 C -0.07 -2.02 9.41 22.47 0.21 -1.81 16
9 C -0.13 -3.14 9.97 22.33 0.22 -2.92 16
10 C 0.09 2.36 6.49 22.57 0.15 2.50 16
11 O -0.32 -6.63 10.43 -91.82 -0.96 -7.58 16
12 C 0.40 6.13 5.98 113.37 0.68 6.80 16
13 F -0.21 -4.38 15.59 44.97 0.70 -3.68 16
14 F -0.21 -4.29 15.56 44.97 0.70 -3.59 16
15 C -0.20 -5.93 8.24 22.33 0.18 -5.74 16
16 C -0.09 -3.00 9.40 22.47 0.21 -2.79 16
17 C -0.17 -7.90 8.06 22.94 0.18 -7.72 16
18 C 0.13 6.44 5.73 -19.90 -0.11 6.32 16
19 C -0.47 -23.90 8.58 23.39 0.20 -23.70 16
20 H 0.07 3.57 7.37 -2.91 -0.02 3.55 16
21 C 0.05 2.21 5.16 85.35 0.44 2.65 16
22 N -0.79 -36.84 10.95 21.87 0.24 -36.60 16
23 Si 0.97 36.21 29.60 68.60 2.03 38.25 16
24 H -0.25 -8.93 7.11 99.48 0.71 -8.23 16
25 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16
26 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16
27 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16
28 H 0.14 3.90 6.09 -2.91 -0.02 3.88 16
29 H 0.16 3.45 6.13 -2.91 -0.02 3.44 16
30 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16
31 H 0.24 0.59 8.14 -2.39 -0.02 0.57 16
32 H 0.13 3.78 5.08 -2.91 -0.01 3.76 16
33 H 0.12 4.48 6.14 -2.91 -0.02 4.46 16
34 H 0.12 5.79 4.24 -2.91 -0.01 5.77 16
35 H 0.30 12.50 8.30 -92.71 -0.77 11.73 16
Total: -1.00 -61.50 317.66 7.95 -53.55
By element:
Atomic # 1 Polarization: 16.62 SS G_CDS: 1.18 Total: 17.81 kcal
Atomic # 6 Polarization: -35.91 SS G_CDS: 3.70 Total: -32.21 kcal
Atomic # 7 Polarization: -63.13 SS G_CDS: 0.59 Total: -62.54 kcal
Atomic # 8 Polarization: -6.63 SS G_CDS: -0.96 Total: -7.58 kcal
Atomic # 9 Polarization: -8.67 SS G_CDS: 1.40 Total: -7.27 kcal
Atomic # 14 Polarization: 36.21 SS G_CDS: 2.03 Total: 38.25 kcal
Total: -61.50 7.95 -53.55 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001242441250.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.547 kcal
(2) G-P(sol) polarization free energy of solvation -61.499 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.046 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.953 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.546 kcal
(6) G-S(sol) free energy of system = (1) + (5) -93.093 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds