Wall clock time and date at job start Tue Mar 31 2020 11:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39596 * 120.45301 * 206.26742 * 3 2 1 5 5 C 1.37698 * 120.19054 * 180.02562 * 4 3 2 6 6 C 1.39836 * 121.16839 * 359.97028 * 5 4 3 7 7 C 1.48262 * 119.54272 * 179.97438 * 6 5 4 8 8 C 1.39437 * 120.06562 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.93238 * 180.02562 * 8 7 6 10 10 C 1.38864 * 120.06554 * 359.97438 * 9 8 7 11 11 O 1.35846 * 119.92657 * 180.02562 * 10 9 8 12 12 C 1.42907 * 116.99986 * 179.97438 * 11 10 9 13 13 F 1.39898 * 109.46900 * 299.99867 * 12 11 10 14 14 F 1.39904 * 109.46870 * 59.99712 * 12 11 10 15 15 C 1.38856 * 120.13986 * 0.26971 * 10 9 8 16 16 C 1.37878 * 120.06489 * 359.45899 * 15 10 9 17 17 C 1.38641 * 120.92236 * 0.26209 * 6 5 4 18 18 C 1.40588 * 119.73047 * 359.51277 * 17 6 5 19 19 C 1.40846 * 120.55192 * 180.22201 * 18 17 6 20 20 H 1.07996 * 120.00070 * 204.64440 * 19 18 17 21 21 C 1.40230 * 119.99766 * 24.65005 * 19 18 17 22 22 N 1.30660 * 120.00279 * 17.29401 * 21 19 18 23 23 Si 1.86806 * 119.99741 * 197.28907 * 21 19 18 24 24 H 1.48506 * 109.46737 * 90.00249 * 23 21 19 25 25 H 1.48499 * 109.47169 * 209.99812 * 23 21 19 26 26 H 1.48493 * 109.47177 * 330.00454 * 23 21 19 27 27 H 1.08008 * 119.90784 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.41469 * 179.97438 * 5 4 3 29 29 H 1.08001 * 120.03588 * 359.97438 * 8 7 6 30 30 H 1.07998 * 119.96679 * 179.97438 * 9 8 7 31 31 H 1.09003 * 109.47297 * 179.97438 * 12 11 10 32 32 H 1.07993 * 119.96563 * 179.72332 * 15 10 9 33 33 H 1.08004 * 120.03366 * 180.29110 * 16 15 10 34 34 H 1.08000 * 120.13472 * 179.71986 * 17 6 5 35 35 H 0.97000 * 120.00062 * 184.65389 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2750 1.0801 0.5326 5 6 4.6520 1.0753 0.5293 6 6 5.3707 -0.0004 -0.0016 7 6 6.8529 0.0324 0.0129 8 6 7.5221 1.1298 0.5537 9 6 8.9005 1.1576 0.5653 10 6 9.6223 0.0941 0.0397 11 8 10.9804 0.1243 0.0532 12 6 11.6599 -1.0031 -0.5032 13 9 11.3026 -2.1574 0.2017 14 9 11.3003 -1.1475 -1.8475 15 6 8.9589 -0.9978 -0.5040 16 6 7.5806 -1.0340 -0.5135 17 6 4.7167 -1.0945 -0.5468 18 6 3.3113 -1.1318 -0.5590 19 6 2.6292 -2.2368 -1.1043 20 1 1.6224 -2.1196 -1.4770 21 6 3.2573 -3.4892 -1.1632 22 7 4.3121 -3.7262 -0.4293 23 14 2.5860 -4.8187 -2.2907 24 1 3.2314 -4.7094 -3.6237 25 1 2.8753 -6.1539 -1.7087 26 1 1.1179 -4.6495 -2.4362 27 1 2.7405 1.9215 0.9484 28 1 5.1864 1.9171 0.9442 29 1 6.9613 1.9574 0.9622 30 1 9.4194 2.0074 0.9836 31 1 12.7368 -0.8508 -0.4299 32 1 9.5230 -1.8213 -0.9160 33 1 7.0651 -1.8857 -0.9323 34 1 5.2845 -1.9163 -0.9575 35 1 4.7865 -4.5675 -0.5194 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242441250.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:10 Heat of formation + Delta-G solvation = -93.092902 kcal Electronic energy + Delta-G solvation = -24424.964462 eV Core-core repulsion = 20408.565705 eV Total energy + Delta-G solvation = -4016.398757 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.26248 -48.26968 -41.00928 -39.64415 -38.22167 -36.88548 -35.79423 -33.01644 -32.28710 -31.47409 -29.63898 -27.59831 -26.93889 -24.61363 -24.01067 -22.36920 -22.15173 -20.04822 -19.55970 -19.07946 -18.82952 -18.59435 -17.47612 -17.09309 -16.57695 -16.04724 -15.59423 -15.40713 -15.23330 -15.05312 -14.90913 -14.67680 -14.60985 -14.54244 -14.41592 -14.05772 -13.86925 -13.61376 -13.52296 -13.34687 -13.24030 -13.01132 -12.82173 -12.60783 -12.32761 -12.23172 -11.92390 -11.66140 -11.27450 -11.15150 -10.02902 -9.97139 -9.50292 -8.90316 -8.51937 -6.53388 -0.21313 0.40550 0.81033 1.01846 1.34756 1.46097 1.50927 1.68422 2.04281 2.12321 2.30538 2.62726 2.65911 2.93555 3.55673 3.61873 3.71775 3.74913 3.86083 3.87631 3.96619 4.30537 4.40026 4.44142 4.58176 4.81426 4.96025 4.99565 5.08399 5.16449 5.25742 5.30858 5.48455 5.57912 5.62574 5.80228 5.94881 6.09600 6.14467 6.17793 6.46822 6.65909 6.78734 6.97770 8.07831 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.013919 B = 0.003903 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.228137 B = 7172.579677 C = 8938.640911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C 0.305 3.695 3 C -0.210 4.210 4 C -0.026 4.026 5 C -0.227 4.227 6 C -0.012 4.012 7 C -0.071 4.071 8 C -0.075 4.075 9 C -0.132 4.132 10 C 0.090 3.910 11 O -0.323 6.323 12 C 0.403 3.597 13 F -0.213 7.213 14 F -0.213 7.213 15 C -0.197 4.197 16 C -0.086 4.086 17 C -0.170 4.170 18 C 0.129 3.871 19 C -0.467 4.467 20 H 0.067 0.933 21 C 0.047 3.953 22 N -0.787 5.787 23 Si 0.973 3.027 24 H -0.252 1.252 25 H -0.260 1.260 26 H -0.269 1.269 27 H 0.130 0.870 28 H 0.141 0.859 29 H 0.160 0.840 30 H 0.163 0.837 31 H 0.239 0.761 32 H 0.132 0.868 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.865 4.297 0.219 20.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.212 5.212 2 C -0.004 4.004 3 C -0.216 4.216 4 C -0.046 4.046 5 C -0.246 4.246 6 C -0.013 4.013 7 C -0.071 4.071 8 C -0.092 4.092 9 C -0.150 4.150 10 C 0.047 3.953 11 O -0.240 6.240 12 C 0.314 3.686 13 F -0.195 7.195 14 F -0.195 7.195 15 C -0.215 4.215 16 C -0.104 4.104 17 C -0.189 4.189 18 C 0.124 3.876 19 C -0.495 4.495 20 H 0.086 0.914 21 C -0.173 4.173 22 N -0.410 5.410 23 Si 0.794 3.206 24 H -0.177 1.177 25 H -0.184 1.184 26 H -0.193 1.193 27 H 0.148 0.852 28 H 0.159 0.841 29 H 0.178 0.822 30 H 0.181 0.819 31 H 0.255 0.745 32 H 0.150 0.850 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 18.355 4.194 0.402 18.833 hybrid contribution -0.396 -1.388 -0.696 1.603 sum 17.960 2.805 -0.294 18.180 Atomic orbital electron populations 1.80995 1.13237 1.11962 1.15028 1.26044 0.92995 0.90579 0.90733 1.17253 0.82936 1.02659 1.18783 1.20727 0.94203 0.95017 0.94661 1.20587 0.92813 1.00192 1.11010 1.18794 0.91204 0.94363 0.96912 1.19110 0.92351 0.95382 1.00276 1.21387 0.93309 0.97638 0.96912 1.20645 0.93066 0.98342 1.02923 1.19065 0.81559 0.95851 0.98874 1.86566 1.17342 1.42722 1.77394 1.24352 0.99137 0.73670 0.71468 1.93080 1.94137 1.53186 1.79113 1.93076 1.94084 1.95303 1.37004 1.21454 0.95454 0.99233 1.05367 1.21186 0.93297 0.98238 0.97701 1.21404 0.93266 0.98586 1.05671 1.18638 0.92149 0.90021 0.86795 1.19844 1.01383 0.93856 1.34381 0.91437 1.26684 0.94597 1.01135 0.94891 1.69720 1.15897 1.26367 1.29008 0.85307 0.79499 0.76766 0.79059 1.17651 1.18424 1.19349 0.85241 0.84126 0.82242 0.81911 0.74533 0.85017 0.86313 0.85999 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -26.29 18.54 19.00 0.35 -25.94 16 2 C 0.30 14.67 14.28 88.33 1.26 15.94 16 3 C -0.21 -9.74 5.95 -19.54 -0.12 -9.86 16 4 C -0.03 -0.99 9.74 22.47 0.22 -0.77 16 5 C -0.23 -8.16 9.37 22.53 0.21 -7.95 16 6 C -0.01 -0.47 5.86 -20.13 -0.12 -0.59 16 7 C -0.07 -2.46 5.88 -20.03 -0.12 -2.57 16 8 C -0.07 -2.02 9.41 22.47 0.21 -1.81 16 9 C -0.13 -3.14 9.97 22.33 0.22 -2.92 16 10 C 0.09 2.36 6.49 22.57 0.15 2.50 16 11 O -0.32 -6.63 10.43 -91.82 -0.96 -7.58 16 12 C 0.40 6.13 5.98 113.37 0.68 6.80 16 13 F -0.21 -4.38 15.59 44.97 0.70 -3.68 16 14 F -0.21 -4.29 15.56 44.97 0.70 -3.59 16 15 C -0.20 -5.93 8.24 22.33 0.18 -5.74 16 16 C -0.09 -3.00 9.40 22.47 0.21 -2.79 16 17 C -0.17 -7.90 8.06 22.94 0.18 -7.72 16 18 C 0.13 6.44 5.73 -19.90 -0.11 6.32 16 19 C -0.47 -23.90 8.58 23.39 0.20 -23.70 16 20 H 0.07 3.57 7.37 -2.91 -0.02 3.55 16 21 C 0.05 2.21 5.16 85.35 0.44 2.65 16 22 N -0.79 -36.84 10.95 21.87 0.24 -36.60 16 23 Si 0.97 36.21 29.60 68.60 2.03 38.25 16 24 H -0.25 -8.93 7.11 99.48 0.71 -8.23 16 25 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 26 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 27 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 28 H 0.14 3.90 6.09 -2.91 -0.02 3.88 16 29 H 0.16 3.45 6.13 -2.91 -0.02 3.44 16 30 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 31 H 0.24 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.13 3.78 5.08 -2.91 -0.01 3.76 16 33 H 0.12 4.48 6.14 -2.91 -0.02 4.46 16 34 H 0.12 5.79 4.24 -2.91 -0.01 5.77 16 35 H 0.30 12.50 8.30 -92.71 -0.77 11.73 16 Total: -1.00 -61.50 317.66 7.95 -53.55 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 1.18 Total: 17.81 kcal Atomic # 6 Polarization: -35.91 SS G_CDS: 3.70 Total: -32.21 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: 0.59 Total: -62.54 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.96 Total: -7.58 kcal Atomic # 9 Polarization: -8.67 SS G_CDS: 1.40 Total: -7.27 kcal Atomic # 14 Polarization: 36.21 SS G_CDS: 2.03 Total: 38.25 kcal Total: -61.50 7.95 -53.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242441250.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.547 kcal (2) G-P(sol) polarization free energy of solvation -61.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds