Wall clock time and date at job start Tue Mar 31 2020 11:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39098 * 120.56656 * 277.35006 * 3 2 1 5 5 C 1.39367 * 119.80983 * 180.29906 * 4 3 2 6 6 C 1.48032 * 119.50206 * 179.70909 * 5 4 3 7 7 C 1.39630 * 120.11292 * 359.74617 * 6 5 4 8 8 C 1.37950 * 119.96644 * 179.73804 * 7 6 5 9 9 C 1.38322 * 120.19649 * 0.51770 * 8 7 6 10 10 C 1.38855 * 120.23332 * 359.76547 * 9 8 7 11 11 O 1.35899 * 119.98190 * 179.97438 * 10 9 8 12 12 C 1.42900 * 117.00225 * 0.02562 * 11 10 9 13 13 F 1.39901 * 109.47126 * 300.00230 * 12 11 10 14 14 F 1.39899 * 109.46711 * 60.00565 * 12 11 10 15 15 C 1.38465 * 120.02963 * 359.96912 * 10 9 8 16 16 C 1.39969 * 121.00110 * 359.73180 * 5 4 3 17 17 C 1.36015 * 121.19588 * 359.95659 * 16 5 4 18 18 C 1.41049 * 120.10498 * 0.03832 * 17 16 5 19 19 C 1.40444 * 120.48812 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00052 * 154.64831 * 19 18 17 21 21 C 1.40310 * 120.00473 * 334.64044 * 19 18 17 22 22 N 1.30635 * 119.99506 * 334.62334 * 21 19 18 23 23 Si 1.86799 * 120.00268 * 154.61457 * 21 19 18 24 24 H 1.48496 * 109.46951 * 180.02562 * 23 21 19 25 25 H 1.48494 * 109.47304 * 300.00598 * 23 21 19 26 26 H 1.48509 * 109.46508 * 60.00469 * 23 21 19 27 27 H 1.08001 * 120.09450 * 0.02562 * 4 3 2 28 28 H 1.08005 * 120.01775 * 359.97438 * 7 6 5 29 29 H 1.07996 * 119.90434 * 180.25282 * 8 7 6 30 30 H 1.07999 * 119.87797 * 179.73769 * 9 8 7 31 31 H 1.09004 * 109.47077 * 180.02562 * 12 11 10 32 32 H 1.07995 * 120.09984 * 179.97438 * 15 10 9 33 33 H 1.07996 * 119.40730 * 179.97438 * 16 5 4 34 34 H 1.07995 * 119.94995 * 180.02562 * 17 16 5 35 35 H 0.97000 * 120.00088 * 354.17692 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2754 -0.1523 1.1878 5 6 4.6689 -0.1430 1.1704 6 6 5.4149 -0.2998 2.4394 7 6 4.7246 -0.4503 3.6438 8 6 5.4229 -0.6016 4.8239 9 6 6.8061 -0.5941 4.8197 10 6 7.5008 -0.4391 3.6275 11 8 8.8598 -0.4320 3.6294 12 6 9.5077 -0.5893 4.8934 13 9 9.1251 0.4515 5.7463 14 9 9.1375 -1.8148 5.4577 15 6 6.8096 -0.2920 2.4368 16 6 5.3739 0.0127 -0.0287 17 6 4.7236 0.1591 -1.2144 18 6 3.3136 0.1567 -1.2529 19 6 2.6339 0.3078 -2.4726 20 1 1.6350 -0.0866 -2.5866 21 6 3.2525 0.9711 -3.5432 22 7 4.1880 1.8531 -3.3120 23 14 2.7386 0.5929 -5.2988 24 1 3.5380 1.4202 -6.2377 25 1 2.9730 -0.8454 -5.5842 26 1 1.2963 0.9028 -5.4699 27 1 2.7463 -0.2734 2.1215 28 1 3.6446 -0.4521 3.6510 29 1 4.8880 -0.7220 5.7543 30 1 7.3475 -0.7087 5.7471 31 1 10.5884 -0.5651 4.7532 32 1 7.3488 -0.1710 1.5089 33 1 6.4537 0.0165 -0.0124 34 1 5.2876 0.2774 -2.1277 35 1 4.3964 2.1116 -2.4006 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243355533.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:13 Heat of formation + Delta-G solvation = -88.851593 kcal Electronic energy + Delta-G solvation = -24173.057197 eV Core-core repulsion = 20156.842356 eV Total energy + Delta-G solvation = -4016.214840 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.47297 -47.46641 -39.83918 -38.37164 -37.05016 -35.32554 -34.54431 -31.58742 -30.67913 -29.88378 -28.69355 -26.20305 -25.64326 -23.23114 -22.55556 -21.62766 -20.74007 -18.79684 -18.55775 -18.25714 -18.03099 -16.89176 -16.24147 -15.72195 -14.99941 -14.91527 -14.63678 -14.39276 -14.02567 -14.01730 -13.78191 -13.67839 -13.51972 -13.10302 -12.95185 -12.89668 -12.48114 -12.37398 -12.08311 -12.05734 -11.80214 -11.47315 -11.31655 -11.07479 -10.97050 -10.73617 -10.62082 -10.03271 -9.96214 -9.53594 -8.94081 -8.31401 -8.11578 -7.79466 -7.45702 -4.95840 1.31187 1.63750 2.01762 2.53329 2.55365 2.93626 3.03274 3.14300 3.33709 3.65570 3.72585 3.79346 4.15642 4.20772 4.29639 4.52150 4.96452 5.06988 5.15883 5.18221 5.33929 5.52498 5.59550 5.73863 5.82108 5.93128 6.26895 6.40242 6.44951 6.50772 6.67527 6.72609 6.78968 6.88063 7.15043 7.22559 7.29980 7.38892 7.48779 7.61453 7.73273 8.13228 8.24372 8.62918 9.44991 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.020798 B = 0.003021 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.980048 B = 9265.851376 C =10343.389630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C 0.297 3.703 3 C -0.188 4.188 4 C 0.015 3.985 5 C -0.220 4.220 6 C 0.055 3.945 7 C -0.168 4.168 8 C -0.073 4.073 9 C -0.228 4.228 10 C 0.111 3.889 11 O -0.323 6.323 12 C 0.412 3.588 13 F -0.201 7.201 14 F -0.201 7.201 15 C -0.159 4.159 16 C -0.034 4.034 17 C -0.217 4.217 18 C 0.128 3.872 19 C -0.455 4.455 20 H 0.089 0.911 21 C 0.035 3.965 22 N -0.749 5.749 23 Si 1.067 2.933 24 H -0.267 1.267 25 H -0.267 1.267 26 H -0.270 1.270 27 H 0.107 0.893 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.177 0.823 32 H 0.132 0.868 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.431 -2.796 9.264 14.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.180 5.180 2 C -0.013 4.013 3 C -0.193 4.193 4 C -0.006 4.006 5 C -0.221 4.221 6 C 0.055 3.945 7 C -0.186 4.186 8 C -0.091 4.091 9 C -0.246 4.246 10 C 0.068 3.932 11 O -0.241 6.241 12 C 0.322 3.678 13 F -0.183 7.183 14 F -0.183 7.183 15 C -0.178 4.178 16 C -0.053 4.053 17 C -0.236 4.236 18 C 0.122 3.878 19 C -0.480 4.480 20 H 0.107 0.893 21 C -0.193 4.193 22 N -0.369 5.369 23 Si 0.888 3.112 24 H -0.191 1.191 25 H -0.192 1.192 26 H -0.195 1.195 27 H 0.125 0.875 28 H 0.142 0.858 29 H 0.138 0.862 30 H 0.141 0.859 31 H 0.194 0.806 32 H 0.150 0.850 33 H 0.120 0.880 34 H 0.134 0.866 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 10.163 -2.365 7.575 12.894 hybrid contribution 0.130 -0.378 2.104 2.142 sum 10.293 -2.743 9.679 14.393 Atomic orbital electron populations 1.81044 1.12589 1.14732 1.09608 1.25690 0.92623 0.91343 0.91647 1.16678 0.83349 1.25311 0.93991 1.20680 0.92792 0.91926 0.95176 1.17638 0.91758 1.21468 0.91240 1.18639 0.91119 0.91778 0.92954 1.21199 1.00050 1.05498 0.91823 1.20743 0.93027 0.97414 0.97942 1.21277 0.95925 1.11085 0.96344 1.18709 0.79984 0.99400 0.95090 1.86586 1.19570 1.87911 1.30017 1.23279 0.97180 0.71851 0.75536 1.93089 1.93348 1.59428 1.72414 1.93088 1.93633 1.45756 1.85809 1.20405 0.93278 1.08298 0.95775 1.20478 0.98078 0.94751 0.91962 1.20784 0.93536 1.11969 0.97286 1.18515 0.91473 0.87574 0.90216 1.20998 1.03414 1.27588 0.95997 0.89320 1.27474 0.92204 0.92183 1.07445 1.70404 1.19820 1.17770 1.28876 0.83584 0.77590 0.78157 0.71878 1.19105 1.19197 1.19463 0.87533 0.85834 0.86174 0.85891 0.80650 0.85034 0.87980 0.86625 0.87660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.72 18.54 41.84 0.78 -10.94 16 2 C 0.30 6.73 14.30 -22.48 -0.32 6.41 16 3 C -0.19 -4.12 5.93 -104.27 -0.62 -4.73 16 4 C 0.02 0.30 9.12 -38.84 -0.35 -0.06 16 5 C -0.22 -4.20 5.88 -104.81 -0.62 -4.82 16 6 C 0.06 0.96 5.88 -104.90 -0.62 0.34 16 7 C -0.17 -2.64 9.41 -39.17 -0.37 -3.01 16 8 C -0.07 -1.05 10.03 -39.66 -0.40 -1.44 16 9 C -0.23 -3.33 8.26 -39.32 -0.32 -3.65 16 10 C 0.11 1.69 6.48 -39.27 -0.25 1.44 16 11 O -0.32 -4.20 10.43 -19.42 -0.20 -4.40 16 12 C 0.41 3.86 5.98 101.05 0.60 4.47 16 13 F -0.20 -2.20 15.57 2.25 0.04 -2.17 16 14 F -0.20 -2.19 15.58 2.25 0.04 -2.16 16 15 C -0.16 -2.61 9.35 -39.04 -0.37 -2.97 16 16 C -0.03 -0.65 9.30 -39.73 -0.37 -1.02 16 17 C -0.22 -4.61 7.88 -39.31 -0.31 -4.92 16 18 C 0.13 2.92 5.46 -104.61 -0.57 2.35 16 19 C -0.45 -10.53 8.48 -37.97 -0.32 -10.85 16 20 H 0.09 2.09 7.45 -52.49 -0.39 1.70 16 21 C 0.03 0.75 4.95 -17.28 -0.09 0.66 16 22 N -0.75 -16.85 12.31 55.57 0.68 -16.17 16 23 Si 1.07 18.67 30.01 -169.99 -5.10 13.57 16 24 H -0.27 -4.61 7.11 56.52 0.40 -4.21 16 25 H -0.27 -4.50 7.11 56.52 0.40 -4.10 16 26 H -0.27 -4.62 7.11 56.52 0.40 -4.22 16 27 H 0.11 1.86 6.13 -52.49 -0.32 1.54 16 28 H 0.12 1.80 6.14 -52.48 -0.32 1.48 16 29 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.12 1.65 5.08 -52.49 -0.27 1.38 16 31 H 0.18 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.13 2.04 6.13 -52.49 -0.32 1.72 16 33 H 0.10 1.74 6.09 -52.49 -0.32 1.42 16 34 H 0.12 2.48 6.48 -52.49 -0.34 2.14 16 35 H 0.31 7.06 6.68 -40.82 -0.27 6.79 16 LS Contribution 316.82 15.07 4.77 4.77 Total: -1.00 -25.90 316.82 -6.49 -32.39 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -2.20 Total: 6.90 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -5.29 Total: -21.80 kcal Atomic # 7 Polarization: -28.57 SS G_CDS: 1.46 Total: -27.11 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -0.20 Total: -4.40 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.07 Total: -4.33 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.10 Total: 13.57 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -25.90 -6.49 -32.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243355533.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.458 kcal (2) G-P(sol) polarization free energy of solvation -25.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds