Wall clock time and date at job start Tue Mar 31 2020 11:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39098 * 120.56656 * 277.35006 * 3 2 1 5 5 C 1.39367 * 119.80983 * 180.29906 * 4 3 2 6 6 C 1.48032 * 119.50206 * 179.70909 * 5 4 3 7 7 C 1.39630 * 120.11292 * 359.74617 * 6 5 4 8 8 C 1.37950 * 119.96644 * 179.73804 * 7 6 5 9 9 C 1.38322 * 120.19649 * 0.51770 * 8 7 6 10 10 C 1.38855 * 120.23332 * 359.76547 * 9 8 7 11 11 O 1.35899 * 119.98190 * 179.97438 * 10 9 8 12 12 C 1.42900 * 117.00225 * 0.02562 * 11 10 9 13 13 F 1.39901 * 109.47126 * 300.00230 * 12 11 10 14 14 F 1.39899 * 109.46711 * 60.00565 * 12 11 10 15 15 C 1.38465 * 120.02963 * 359.96912 * 10 9 8 16 16 C 1.39969 * 121.00110 * 359.73180 * 5 4 3 17 17 C 1.36015 * 121.19588 * 359.95659 * 16 5 4 18 18 C 1.41049 * 120.10498 * 0.03832 * 17 16 5 19 19 C 1.40444 * 120.48812 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00052 * 154.64831 * 19 18 17 21 21 C 1.40310 * 120.00473 * 334.64044 * 19 18 17 22 22 N 1.30635 * 119.99506 * 334.62334 * 21 19 18 23 23 Si 1.86799 * 120.00268 * 154.61457 * 21 19 18 24 24 H 1.48496 * 109.46951 * 180.02562 * 23 21 19 25 25 H 1.48494 * 109.47304 * 300.00598 * 23 21 19 26 26 H 1.48509 * 109.46508 * 60.00469 * 23 21 19 27 27 H 1.08001 * 120.09450 * 0.02562 * 4 3 2 28 28 H 1.08005 * 120.01775 * 359.97438 * 7 6 5 29 29 H 1.07996 * 119.90434 * 180.25282 * 8 7 6 30 30 H 1.07999 * 119.87797 * 179.73769 * 9 8 7 31 31 H 1.09004 * 109.47077 * 180.02562 * 12 11 10 32 32 H 1.07995 * 120.09984 * 179.97438 * 15 10 9 33 33 H 1.07996 * 119.40730 * 179.97438 * 16 5 4 34 34 H 1.07995 * 119.94995 * 180.02562 * 17 16 5 35 35 H 0.97000 * 120.00088 * 354.17692 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2754 -0.1523 1.1878 5 6 4.6689 -0.1430 1.1704 6 6 5.4149 -0.2998 2.4394 7 6 4.7246 -0.4503 3.6438 8 6 5.4229 -0.6016 4.8239 9 6 6.8061 -0.5941 4.8197 10 6 7.5008 -0.4391 3.6275 11 8 8.8598 -0.4320 3.6294 12 6 9.5077 -0.5893 4.8934 13 9 9.1251 0.4515 5.7463 14 9 9.1375 -1.8148 5.4577 15 6 6.8096 -0.2920 2.4368 16 6 5.3739 0.0127 -0.0287 17 6 4.7236 0.1591 -1.2144 18 6 3.3136 0.1567 -1.2529 19 6 2.6339 0.3078 -2.4726 20 1 1.6350 -0.0866 -2.5866 21 6 3.2525 0.9711 -3.5432 22 7 4.1880 1.8531 -3.3120 23 14 2.7386 0.5929 -5.2988 24 1 3.5380 1.4202 -6.2377 25 1 2.9730 -0.8454 -5.5842 26 1 1.2963 0.9028 -5.4699 27 1 2.7463 -0.2734 2.1215 28 1 3.6446 -0.4521 3.6510 29 1 4.8880 -0.7220 5.7543 30 1 7.3475 -0.7087 5.7471 31 1 10.5884 -0.5651 4.7532 32 1 7.3488 -0.1710 1.5089 33 1 6.4537 0.0165 -0.0124 34 1 5.2876 0.2774 -2.1277 35 1 4.3964 2.1116 -2.4006 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243355533.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:13 Heat of formation + Delta-G solvation = -99.627065 kcal Electronic energy + Delta-G solvation = -24173.524456 eV Core-core repulsion = 20156.842356 eV Total energy + Delta-G solvation = -4016.682100 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.26641 -48.26606 -41.01243 -39.83319 -38.31359 -37.10298 -36.10507 -33.03503 -32.11749 -31.25859 -30.15943 -27.30260 -26.95770 -24.69333 -23.91980 -23.00803 -22.08481 -20.28260 -19.86179 -19.16267 -18.83968 -18.28625 -17.52309 -16.91705 -16.45200 -16.37718 -15.69119 -15.59529 -15.31406 -15.14307 -14.91951 -14.82002 -14.75802 -14.60242 -14.38902 -14.12193 -13.93027 -13.74372 -13.49665 -13.41301 -13.37468 -13.01644 -12.65647 -12.47420 -12.37294 -12.03742 -11.94432 -11.60739 -11.47378 -11.10621 -10.37232 -9.77562 -9.53613 -9.42131 -8.96683 -6.66599 -0.03357 0.33724 0.44540 1.04521 1.50017 1.62773 1.68183 1.79321 1.92853 2.20941 2.23678 2.54464 2.59487 2.90660 3.43717 3.50794 3.56378 3.74729 3.83563 3.92991 4.02615 4.22406 4.29170 4.41402 4.45954 4.58741 4.85259 4.87791 5.02700 5.19698 5.22536 5.35874 5.43097 5.48295 5.52697 5.61925 5.76576 5.87801 6.03418 6.10613 6.17121 6.45310 6.57677 6.84738 7.75426 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.020798 B = 0.003021 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.980048 B = 9265.851376 C =10343.389630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C 0.303 3.697 3 C -0.207 4.207 4 C 0.012 3.988 5 C -0.206 4.206 6 C 0.031 3.969 7 C -0.170 4.170 8 C -0.072 4.072 9 C -0.223 4.223 10 C 0.105 3.895 11 O -0.331 6.331 12 C 0.406 3.594 13 F -0.210 7.210 14 F -0.210 7.210 15 C -0.166 4.166 16 C -0.031 4.031 17 C -0.226 4.226 18 C 0.114 3.886 19 C -0.493 4.493 20 H 0.073 0.927 21 C 0.011 3.989 22 N -0.767 5.767 23 Si 1.110 2.890 24 H -0.261 1.261 25 H -0.257 1.257 26 H -0.266 1.266 27 H 0.130 0.870 28 H 0.134 0.866 29 H 0.151 0.849 30 H 0.137 0.863 31 H 0.235 0.765 32 H 0.135 0.865 33 H 0.126 0.874 34 H 0.109 0.891 35 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.263 -3.351 11.149 17.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.201 5.201 2 C -0.006 4.006 3 C -0.213 4.213 4 C -0.008 4.008 5 C -0.207 4.207 6 C 0.031 3.969 7 C -0.188 4.188 8 C -0.090 4.090 9 C -0.242 4.242 10 C 0.062 3.938 11 O -0.249 6.249 12 C 0.317 3.683 13 F -0.192 7.192 14 F -0.192 7.192 15 C -0.185 4.185 16 C -0.050 4.050 17 C -0.245 4.245 18 C 0.108 3.892 19 C -0.518 4.518 20 H 0.091 0.909 21 C -0.212 4.212 22 N -0.387 5.387 23 Si 0.926 3.074 24 H -0.185 1.185 25 H -0.181 1.181 26 H -0.190 1.190 27 H 0.147 0.853 28 H 0.152 0.848 29 H 0.169 0.831 30 H 0.155 0.845 31 H 0.250 0.750 32 H 0.153 0.847 33 H 0.143 0.857 34 H 0.127 0.873 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.007 -2.925 9.492 15.582 hybrid contribution -0.219 -0.262 1.898 1.929 sum 11.787 -3.187 11.390 16.698 Atomic orbital electron populations 1.81018 1.13031 1.15784 1.10257 1.25882 0.92827 0.90846 0.91089 1.16867 0.83079 1.26693 0.94693 1.20907 0.93164 0.91454 0.95280 1.17925 0.91765 1.18867 0.92141 1.18616 0.91659 0.94055 0.92618 1.21395 1.00747 1.04899 0.91766 1.21096 0.93089 0.96133 0.98665 1.21587 0.96321 1.09557 0.96698 1.18797 0.81332 0.98831 0.94853 1.86590 1.18213 1.87688 1.32420 1.24260 0.99099 0.70941 0.74034 1.93070 1.93593 1.59898 1.72651 1.93069 1.93866 1.46383 1.85864 1.20506 0.93129 1.08183 0.96668 1.20755 0.99387 0.93420 0.91442 1.20763 0.93017 1.12903 0.97861 1.18780 0.92327 0.87544 0.90542 1.21016 1.03333 1.30107 0.97393 0.90886 1.28550 0.91469 0.91082 1.10076 1.70492 1.21294 1.18922 1.27984 0.83064 0.77438 0.78575 0.68284 1.18486 1.18093 1.19046 0.85280 0.84830 0.83126 0.84531 0.74957 0.84712 0.85654 0.87266 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -24.82 18.54 19.00 0.35 -24.47 16 2 C 0.30 14.02 14.30 88.33 1.26 15.28 16 3 C -0.21 -9.26 5.93 -19.63 -0.12 -9.38 16 4 C 0.01 0.48 9.12 22.75 0.21 0.69 16 5 C -0.21 -7.67 5.88 -19.99 -0.12 -7.79 16 6 C 0.03 1.01 5.88 -20.04 -0.12 0.89 16 7 C -0.17 -4.91 9.41 22.54 0.21 -4.70 16 8 C -0.07 -1.81 10.03 22.22 0.22 -1.59 16 9 C -0.22 -5.80 8.26 22.44 0.19 -5.62 16 10 C 0.10 2.94 6.48 22.47 0.15 3.08 16 11 O -0.33 -7.63 10.43 -92.41 -0.96 -8.59 16 12 C 0.41 6.14 5.98 113.37 0.68 6.82 16 13 F -0.21 -3.94 15.57 44.97 0.70 -3.24 16 14 F -0.21 -3.91 15.58 44.97 0.70 -3.21 16 15 C -0.17 -5.13 9.35 22.62 0.21 -4.92 16 16 C -0.03 -1.20 9.30 22.17 0.21 -0.99 16 17 C -0.23 -9.82 7.88 22.44 0.18 -9.65 16 18 C 0.11 5.35 5.46 -19.86 -0.11 5.24 16 19 C -0.49 -23.80 8.48 23.31 0.20 -23.61 16 20 H 0.07 3.64 7.45 -2.91 -0.02 3.62 16 21 C 0.01 0.50 4.95 85.37 0.42 0.92 16 22 N -0.77 -35.59 12.31 21.89 0.27 -35.32 16 23 Si 1.11 38.22 30.01 68.60 2.06 40.28 16 24 H -0.26 -8.64 7.11 99.48 0.71 -7.94 16 25 H -0.26 -8.32 7.11 99.48 0.71 -7.62 16 26 H -0.27 -8.88 7.11 99.48 0.71 -8.17 16 27 H 0.13 4.32 6.13 -2.91 -0.02 4.31 16 28 H 0.13 3.53 6.14 -2.91 -0.02 3.51 16 29 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 30 H 0.14 3.17 5.08 -2.91 -0.01 3.16 16 31 H 0.23 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.14 3.95 6.13 -2.91 -0.02 3.93 16 33 H 0.13 4.14 6.09 -2.91 -0.02 4.13 16 34 H 0.11 4.83 6.48 -2.91 -0.02 4.81 16 35 H 0.30 14.18 6.68 -92.71 -0.62 13.56 16 Total: -1.00 -57.11 316.82 8.12 -48.99 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 1.33 Total: 20.86 kcal Atomic # 6 Polarization: -38.98 SS G_CDS: 3.67 Total: -35.31 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: 0.62 Total: -59.79 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.96 Total: -8.59 kcal Atomic # 9 Polarization: -7.84 SS G_CDS: 1.40 Total: -6.44 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.06 Total: 40.28 kcal Total: -57.11 8.12 -48.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243355533.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.632 kcal (2) G-P(sol) polarization free energy of solvation -57.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds