Wall clock time and date at job start Tue Mar 31 2020 10:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34780 * 119.99974 * 2 1 4 4 O 1.21578 * 119.99654 * 359.97438 * 3 2 1 5 5 C 1.47715 * 119.99947 * 180.02562 * 3 2 1 6 6 C 1.39786 * 119.99111 * 179.97438 * 5 3 2 7 7 C 1.36572 * 120.15454 * 179.72428 * 6 5 3 8 8 C 1.39754 * 120.14158 * 0.23364 * 7 6 5 9 9 C 1.47846 * 120.00393 * 180.02562 * 8 7 6 10 10 C 1.40014 * 119.88619 * 309.72023 * 9 8 7 11 11 C 1.36228 * 120.11441 * 179.76087 * 10 9 8 12 12 C 1.40950 * 119.88250 * 0.49498 * 11 10 9 13 13 C 1.40980 * 120.11222 * 179.73781 * 12 11 10 14 14 H 1.08005 * 119.99737 * 24.70872 * 13 12 11 15 15 C 1.40084 * 120.00337 * 204.71085 * 13 12 11 16 16 N 1.30748 * 119.99629 * 17.93561 * 15 13 12 17 17 Si 1.86798 * 120.00272 * 197.93943 * 15 13 12 18 18 H 1.48495 * 109.47528 * 89.99525 * 17 15 13 19 19 H 1.48493 * 109.47255 * 210.00126 * 17 15 13 20 20 H 1.48508 * 109.46799 * 329.99773 * 17 15 13 21 21 C 1.40956 * 119.77741 * 359.76367 * 12 11 10 22 22 C 1.36222 * 119.88000 * 359.97438 * 21 12 11 23 23 C 1.39860 * 119.98960 * 0.02562 * 8 7 6 24 24 Cl 1.73603 * 120.07869 * 179.97438 * 23 8 7 25 25 C 1.37805 * 119.84557 * 359.97438 * 23 8 7 26 26 H 1.08999 * 109.47132 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47032 * 299.99791 * 1 2 3 28 28 H 1.08998 * 109.47499 * 60.00051 * 1 2 3 29 29 H 0.97001 * 120.00134 * 180.02562 * 2 1 3 30 30 H 1.07998 * 119.92202 * 359.97438 * 6 5 3 31 31 H 1.07995 * 119.93008 * 180.25370 * 7 6 5 32 32 H 1.07994 * 119.93927 * 0.02562 * 10 9 8 33 33 H 1.07997 * 120.05104 * 180.23151 * 11 10 9 34 34 H 0.97007 * 119.99452 * 180.02562 * 16 15 13 35 35 H 1.08003 * 120.06046 * 179.97438 * 21 12 11 36 36 H 1.08004 * 119.94062 * 180.02562 * 22 21 12 37 37 H 1.08002 * 120.07158 * 179.97438 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2201 -0.0005 5 6 3.6160 1.1672 -0.0006 6 6 4.3147 2.3779 -0.0011 7 6 5.6804 2.3818 0.0040 8 6 6.3857 1.1752 0.0049 9 6 7.8641 1.1830 0.0111 10 6 8.5615 1.9640 -0.9184 11 6 9.9237 1.9784 -0.9138 12 6 10.6311 1.1972 0.0222 13 6 12.0408 1.2042 0.0277 14 1 12.5782 2.0530 -0.3689 15 6 12.7447 0.1103 0.5476 16 7 12.1438 -1.0407 0.7007 17 14 14.5419 0.2960 1.0221 18 1 14.6378 0.7162 2.4432 19 1 15.2383 -1.0030 0.8419 20 1 15.1783 1.3229 0.1583 21 6 9.9242 0.4085 0.9523 22 6 8.5620 0.4053 0.9428 23 6 5.6926 -0.0396 0.0000 24 17 6.5663 -1.5397 0.0005 25 6 4.3146 -0.0429 -0.0052 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.9500 -0.8400 -0.0004 30 1 3.7733 3.3124 -0.0015 31 1 6.2166 3.3193 0.0077 32 1 8.0186 2.5593 -1.6375 33 1 10.4606 2.5841 -1.6288 34 1 12.6311 -1.7982 1.0610 35 1 10.4616 -0.1921 1.6713 36 1 8.0194 -0.1984 1.6553 37 1 3.7757 -0.9789 -0.0094 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243448035.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:38 Heat of formation + Delta-G solvation = -6.621425 kcal Electronic energy + Delta-G solvation = -22168.424696 eV Core-core repulsion = 18707.572304 eV Total energy + Delta-G solvation = -3460.852393 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.077 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.14141 -38.64522 -37.24459 -35.97010 -34.79136 -34.04610 -31.84179 -30.70683 -29.59065 -29.16857 -27.10624 -25.33067 -23.13386 -22.37152 -20.98513 -20.67223 -20.02303 -18.30859 -17.49307 -16.31457 -15.96575 -15.37666 -15.30372 -15.08080 -14.75371 -14.16167 -13.94844 -13.68805 -13.54779 -13.19574 -12.97736 -12.65840 -12.50731 -12.40575 -12.15379 -11.75404 -11.38954 -11.27950 -11.13045 -11.06868 -10.77850 -10.64803 -10.43682 -10.02011 -9.79813 -9.50598 -9.43012 -9.31899 -8.79878 -8.44040 -7.64427 -7.32610 -6.97246 -4.51456 0.86490 1.43290 2.50529 2.54478 2.88509 2.96837 2.99784 3.04917 3.09895 3.15420 3.77336 3.95929 4.44829 4.65621 4.84070 5.02104 5.22489 5.28031 5.35054 5.49088 5.55487 5.61575 5.80623 5.94566 6.14760 6.18561 6.23539 6.31230 6.47840 6.62966 6.82115 6.87852 6.93475 7.11973 7.19029 7.32482 7.47455 7.73284 7.89265 7.96092 8.10821 8.11435 8.45559 8.68064 8.79835 9.94185 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.032378 B = 0.002917 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.571425 B = 9595.853912 C =10244.496313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.737 5.737 3 C 0.566 3.434 4 O -0.543 6.543 5 C -0.168 4.168 6 C -0.048 4.048 7 C -0.130 4.130 8 C 0.061 3.939 9 C -0.224 4.224 10 C -0.053 4.053 11 C -0.233 4.233 12 C 0.123 3.877 13 C -0.446 4.446 14 H 0.082 0.918 15 C 0.074 3.926 16 N -0.774 5.774 17 Si 0.912 3.088 18 H -0.265 1.265 19 H -0.276 1.276 20 H -0.260 1.260 21 C -0.174 4.174 22 C -0.056 4.056 23 C -0.061 4.061 24 Cl -0.057 7.057 25 C -0.071 4.071 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.402 0.598 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.285 0.715 35 H 0.118 0.882 36 H 0.091 0.909 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.986 -1.879 0.085 13.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.389 5.389 3 C 0.356 3.644 4 O -0.421 6.421 5 C -0.171 4.171 6 C -0.067 4.067 7 C -0.149 4.149 8 C 0.060 3.940 9 C -0.225 4.225 10 C -0.072 4.072 11 C -0.252 4.252 12 C 0.120 3.880 13 C -0.474 4.474 14 H 0.101 0.899 15 C -0.147 4.147 16 N -0.398 5.398 17 Si 0.735 3.265 18 H -0.190 1.190 19 H -0.201 1.201 20 H -0.184 1.184 21 C -0.193 4.193 22 C -0.075 4.075 23 C -0.088 4.088 24 Cl -0.027 7.027 25 C -0.091 4.091 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.237 0.763 30 H 0.152 0.848 31 H 0.153 0.847 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.136 0.864 36 H 0.109 0.891 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.322 -1.533 0.147 13.410 hybrid contribution 1.064 -0.763 0.163 1.319 sum -12.258 -2.296 0.310 12.475 Atomic orbital electron populations 1.21521 0.79475 1.02144 1.02353 1.45729 1.07757 1.08831 1.76574 1.18257 0.87270 0.83487 0.75433 1.90751 1.70027 1.31194 1.50150 1.19554 0.91988 0.93935 1.11670 1.20918 0.93967 0.97326 0.94525 1.21047 0.93214 0.97947 1.02665 1.19187 0.94508 0.90340 0.89937 1.17893 0.88188 1.10334 1.06111 1.20261 0.94178 0.96322 0.96395 1.20632 0.93240 1.08469 1.02864 1.17732 0.93235 0.88833 0.88232 1.19745 0.91750 1.02365 1.33513 0.89950 1.26047 1.01390 0.94343 0.92889 1.69801 1.38947 1.00741 1.30264 0.86246 0.81187 0.78904 0.80129 1.19010 1.20104 1.18379 1.20956 0.92389 1.04521 1.01456 1.20442 0.94480 0.95853 0.96714 1.20990 0.91419 0.88063 1.08325 1.98374 1.76524 1.30957 1.96889 1.20951 0.92286 0.97264 0.98559 0.90681 0.92203 0.92198 0.76343 0.84847 0.84703 0.89164 0.88694 0.90397 0.86387 0.89099 0.85569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 10.70 59.84 0.64 1.35 16 2 N -0.74 -7.42 5.66 -68.09 -0.39 -7.80 16 3 C 0.57 7.85 7.77 -12.39 -0.10 7.76 16 4 O -0.54 -9.18 16.33 5.30 0.09 -9.09 16 5 C -0.17 -2.39 5.88 -104.89 -0.62 -3.01 16 6 C -0.05 -0.71 9.53 -39.60 -0.38 -1.09 16 7 C -0.13 -2.06 9.44 -39.62 -0.37 -2.44 16 8 C 0.06 1.10 5.47 -104.79 -0.57 0.53 16 9 C -0.22 -4.68 5.13 -104.64 -0.54 -5.21 16 10 C -0.05 -1.13 9.43 -39.64 -0.37 -1.50 16 11 C -0.23 -5.38 9.73 -39.28 -0.38 -5.76 16 12 C 0.12 3.08 5.57 -106.80 -0.60 2.48 16 13 C -0.45 -11.09 9.03 -37.85 -0.34 -11.43 16 14 H 0.08 1.96 7.91 -52.48 -0.42 1.55 16 15 C 0.07 1.74 5.13 -17.32 -0.09 1.65 16 16 N -0.77 -18.84 10.96 55.55 0.61 -18.23 16 17 Si 0.91 17.50 29.60 -169.99 -5.03 12.47 16 18 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 19 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 20 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 21 C -0.17 -4.28 8.63 -39.28 -0.34 -4.62 16 22 C -0.06 -1.25 8.09 -39.65 -0.32 -1.57 16 23 C -0.06 -1.01 6.28 -39.13 -0.25 -1.25 16 24 Cl -0.06 -0.96 25.96 -51.86 -1.35 -2.30 16 25 C -0.07 -0.97 9.31 -39.18 -0.36 -1.33 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.40 3.09 6.85 -40.82 -0.28 2.81 16 30 H 0.13 1.84 7.63 -52.49 -0.40 1.44 16 31 H 0.14 1.98 8.03 -52.49 -0.42 1.56 16 32 H 0.09 1.69 8.03 -52.49 -0.42 1.27 16 33 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 34 H 0.28 6.27 8.29 -40.82 -0.34 5.93 16 35 H 0.12 3.00 6.16 -52.48 -0.32 2.68 16 36 H 0.09 1.91 7.14 -52.48 -0.37 1.53 16 37 H 0.13 1.31 6.39 -52.49 -0.34 0.97 16 LS Contribution 333.86 15.07 5.03 5.03 Total: -1.00 -28.05 333.86 -9.82 -37.87 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -3.80 Total: 7.51 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -4.99 Total: -25.45 kcal Atomic # 7 Polarization: -26.25 SS G_CDS: 0.22 Total: -26.03 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.47 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.35 Total: -2.30 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.05 -9.82 -37.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243448035.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.244 kcal (2) G-P(sol) polarization free energy of solvation -28.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds