Wall clock time and date at job start Tue Mar 31 2020 11:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39582 * 120.45816 * 16.06415 * 3 2 1 5 5 C 1.37711 * 120.18323 * 179.74449 * 4 3 2 6 6 C 1.39818 * 121.17377 * 0.27404 * 5 4 3 7 7 C 1.48327 * 119.53744 * 179.97438 * 6 5 4 8 8 C 1.39347 * 120.09956 * 179.72405 * 7 6 5 9 9 C 1.38259 * 119.89616 * 179.74239 * 8 7 6 10 10 F 1.35094 * 119.94737 * 180.29569 * 9 8 7 11 11 C 1.38510 * 120.09772 * 0.53603 * 9 8 7 12 12 C 1.50705 * 119.89603 * 179.76729 * 11 9 8 13 13 O 1.42897 * 109.46724 * 269.97085 * 12 11 9 14 14 C 1.38511 * 120.20275 * 359.73660 * 11 9 8 15 15 F 1.35101 * 119.94725 * 180.02562 * 14 11 9 16 16 C 1.38240 * 120.10006 * 359.97438 * 14 11 9 17 17 C 1.38594 * 120.93003 * 359.97438 * 6 5 4 18 18 C 1.40614 * 119.73129 * 359.97438 * 17 6 5 19 19 C 1.40838 * 120.55593 * 179.97438 * 18 17 6 20 20 H 1.07997 * 120.00460 * 204.50147 * 19 18 17 21 21 C 1.40240 * 119.99744 * 24.49862 * 19 18 17 22 22 N 1.30664 * 119.99901 * 17.45051 * 21 19 18 23 23 Si 1.86799 * 120.00168 * 197.45182 * 21 19 18 24 24 H 1.48502 * 109.46849 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47335 * 120.00065 * 23 21 19 26 26 H 1.48504 * 109.47222 * 240.00101 * 23 21 19 27 27 H 1.07995 * 119.90403 * 0.02562 * 4 3 2 28 28 H 1.08005 * 119.41706 * 180.25596 * 5 4 3 29 29 H 1.07998 * 120.05221 * 0.02562 * 8 7 6 30 30 H 1.09006 * 109.46877 * 29.97112 * 12 11 9 31 31 H 1.08992 * 109.47256 * 149.97527 * 12 11 9 32 32 H 0.96702 * 114.00013 * 179.97438 * 13 12 11 33 33 H 1.08000 * 120.04745 * 180.02562 * 16 14 11 34 34 H 1.07992 * 120.13887 * 180.02562 * 17 6 5 35 35 H 0.96994 * 119.99939 * 184.50533 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2761 -1.1553 -0.3329 5 6 4.6532 -1.1468 -0.3362 6 6 5.3707 0.0063 -0.0040 7 6 6.8535 -0.0254 -0.0188 8 6 7.5803 1.1186 0.3047 9 6 8.9624 1.0828 0.2948 10 9 9.6680 2.1897 0.6140 11 6 9.6245 -0.0848 -0.0469 12 6 11.1311 -0.1172 -0.0613 13 8 11.6029 0.2480 -1.3598 14 6 8.9062 -1.2228 -0.3747 15 9 9.5573 -2.3591 -0.7066 16 6 7.5241 -1.1980 -0.3616 17 6 4.7158 1.1787 0.3390 18 6 3.3102 1.2136 0.3538 19 6 2.6270 2.3955 0.7002 20 1 1.6221 2.3432 1.0923 21 6 3.2517 3.6403 0.5360 22 7 4.3010 3.7480 -0.2352 23 14 2.5838 5.1443 1.4198 24 1 1.3973 4.7588 2.2253 25 1 3.6314 5.6985 2.3146 26 1 2.1914 6.1714 0.4216 27 1 2.7424 -2.0574 -0.5931 28 1 5.1885 -2.0470 -0.5998 29 1 7.0648 2.0306 0.5673 30 1 11.5168 0.5863 0.6766 31 1 11.4752 -1.1227 0.1807 32 1 12.5664 0.2489 -1.4423 33 1 6.9648 -2.0859 -0.6169 34 1 5.2828 2.0620 0.5930 35 1 4.7721 4.5935 -0.2978 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244344056.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:22 Heat of formation + Delta-G solvation = -89.657879 kcal Electronic energy + Delta-G solvation = -24487.431670 eV Core-core repulsion = 20471.181867 eV Total energy + Delta-G solvation = -4016.249804 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.08220 -50.05319 -40.54781 -39.09960 -37.71761 -36.91569 -35.85751 -33.68775 -32.00478 -31.23748 -30.79965 -27.59071 -27.07360 -24.34747 -23.99982 -22.51636 -22.17596 -19.67503 -19.22147 -18.59216 -18.55433 -18.21297 -17.17269 -17.00871 -16.88698 -16.65048 -16.33854 -15.91094 -15.54387 -15.51115 -15.13555 -14.93776 -14.58130 -14.50531 -14.18568 -13.92628 -13.64760 -13.48323 -13.42692 -13.30964 -13.02009 -12.99808 -12.71941 -12.39317 -12.27454 -12.10024 -11.76469 -11.41809 -11.20238 -11.07163 -10.38483 -9.79368 -9.53544 -9.01521 -8.78104 -6.54701 -0.55080 -0.02777 0.59292 0.98346 1.37241 1.47911 1.50814 2.03813 2.08383 2.13323 2.60684 2.67758 2.77372 3.27233 3.30266 3.54741 3.58786 3.63775 3.70415 3.98565 4.11284 4.32671 4.34407 4.43358 4.57356 4.72105 4.77500 4.84544 4.92578 4.96549 5.09043 5.17075 5.30029 5.44172 5.69660 5.76503 5.90651 6.02118 6.12114 6.39734 6.63211 6.73698 6.85594 6.96675 8.05644 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.014137 B = 0.004175 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.084001 B = 6705.736849 C = 8522.860274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C 0.304 3.696 3 C -0.202 4.202 4 C -0.025 4.025 5 C -0.221 4.221 6 C -0.025 4.025 7 C 0.031 3.969 8 C -0.164 4.164 9 C 0.141 3.859 10 F -0.132 7.132 11 C -0.182 4.182 12 C 0.122 3.878 13 O -0.585 6.585 14 C 0.145 3.855 15 F -0.126 7.126 16 C -0.154 4.154 17 C -0.153 4.153 18 C 0.126 3.874 19 C -0.460 4.460 20 H 0.070 0.930 21 C 0.048 3.952 22 N -0.784 5.784 23 Si 0.972 3.028 24 H -0.267 1.267 25 H -0.250 1.250 26 H -0.265 1.265 27 H 0.131 0.869 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.403 0.597 33 H 0.168 0.832 34 H 0.128 0.872 35 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.392 -4.547 1.485 17.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.209 5.209 2 C -0.005 4.005 3 C -0.208 4.208 4 C -0.045 4.045 5 C -0.240 4.240 6 C -0.026 4.026 7 C 0.030 3.970 8 C -0.183 4.183 9 C 0.122 3.878 10 F -0.110 7.110 11 C -0.184 4.184 12 C 0.045 3.955 13 O -0.395 6.395 14 C 0.126 3.874 15 F -0.104 7.104 16 C -0.173 4.173 17 C -0.172 4.172 18 C 0.121 3.879 19 C -0.488 4.488 20 H 0.088 0.912 21 C -0.172 4.172 22 N -0.407 5.407 23 Si 0.793 3.207 24 H -0.191 1.191 25 H -0.174 1.174 26 H -0.190 1.190 27 H 0.149 0.851 28 H 0.158 0.842 29 H 0.159 0.841 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.254 0.746 33 H 0.185 0.815 34 H 0.145 0.855 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 14.213 -4.319 1.209 14.904 hybrid contribution 0.605 0.929 0.390 1.175 sum 14.818 -3.389 1.599 15.284 Atomic orbital electron populations 1.81009 1.13287 1.11150 1.15503 1.26025 0.92984 0.90678 0.90783 1.17258 0.82952 0.98474 1.22145 1.20717 0.94059 0.95144 0.94589 1.20557 0.92932 0.98030 1.12525 1.18592 0.89958 0.94522 0.99492 1.18580 0.92702 0.91798 0.93900 1.21422 0.91870 1.00778 1.04262 1.17026 0.88860 0.82402 0.99560 1.91487 1.78617 1.50839 1.90079 1.19773 0.97678 0.92475 1.08483 1.20767 0.87448 1.01384 0.85885 1.86525 1.29183 1.92391 1.31371 1.16960 0.89737 0.81963 0.98788 1.91507 1.81408 1.47802 1.89724 1.21433 0.91896 1.00282 1.03665 1.21446 0.93374 0.97177 1.05226 1.18617 0.92040 0.90495 0.86725 1.19886 1.01575 0.91416 1.35911 0.91227 1.26673 0.94535 1.03031 0.93007 1.69695 1.15966 1.29845 1.25226 0.85276 0.79767 0.76638 0.79051 1.19065 1.17405 1.18956 0.85095 0.84194 0.84117 0.90808 0.90202 0.74605 0.81465 0.85491 0.88693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -25.29 18.54 19.00 0.35 -24.94 16 2 C 0.30 14.03 14.28 88.33 1.26 15.29 16 3 C -0.20 -8.89 5.95 -19.54 -0.12 -9.01 16 4 C -0.02 -0.90 9.74 22.47 0.22 -0.68 16 5 C -0.22 -7.48 9.37 22.53 0.21 -7.27 16 6 C -0.02 -0.91 5.86 -20.12 -0.12 -1.03 16 7 C 0.03 0.99 5.87 -20.06 -0.12 0.87 16 8 C -0.16 -5.32 9.39 22.54 0.21 -5.11 16 9 C 0.14 4.16 7.23 22.34 0.16 4.32 16 10 F -0.13 -3.85 16.46 44.97 0.74 -3.11 16 11 C -0.18 -4.82 5.53 -19.73 -0.11 -4.93 16 12 C 0.12 2.48 6.81 71.24 0.48 2.96 16 13 O -0.58 -12.31 13.64 -148.98 -2.03 -14.35 16 14 C 0.15 3.80 7.23 22.34 0.16 3.96 16 15 F -0.13 -3.08 16.46 44.97 0.74 -2.34 16 16 C -0.15 -4.18 9.39 22.54 0.21 -3.97 16 17 C -0.15 -6.63 8.06 22.94 0.18 -6.45 16 18 C 0.13 5.96 5.74 -19.90 -0.11 5.85 16 19 C -0.46 -22.42 8.57 23.39 0.20 -22.22 16 20 H 0.07 3.52 7.38 -2.91 -0.02 3.50 16 21 C 0.05 2.15 5.16 85.35 0.44 2.59 16 22 N -0.78 -34.91 10.94 21.88 0.24 -34.68 16 23 Si 0.97 34.60 29.60 68.60 2.03 36.64 16 24 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 25 H -0.25 -8.24 7.11 99.48 0.71 -7.53 16 26 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 27 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 28 H 0.14 3.67 6.09 -2.91 -0.02 3.66 16 29 H 0.14 4.83 6.15 -2.91 -0.02 4.82 16 30 H 0.07 1.29 7.63 -2.38 -0.02 1.28 16 31 H 0.08 1.30 7.63 -2.39 -0.02 1.28 16 32 H 0.40 3.90 9.12 -74.06 -0.68 3.22 16 33 H 0.17 3.77 6.13 -2.91 -0.02 3.75 16 34 H 0.13 5.58 4.23 -2.91 -0.01 5.56 16 35 H 0.30 11.93 8.30 -92.71 -0.77 11.16 16 Total: -1.00 -56.36 321.85 5.77 -50.59 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.53 Total: 17.01 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: 3.17 Total: -24.83 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: 0.59 Total: -59.62 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -2.03 Total: -14.35 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 1.48 Total: -5.44 kcal Atomic # 14 Polarization: 34.60 SS G_CDS: 2.03 Total: 36.64 kcal Total: -56.36 5.77 -50.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244344056.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.071 kcal (2) G-P(sol) polarization free energy of solvation -56.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds