Wall clock time and date at job start Tue Mar 31 2020 11:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39062 * 120.56800 * 72.59507 * 3 2 1 5 5 C 1.39429 * 119.80432 * 179.97438 * 4 3 2 6 6 C 1.47919 * 119.50106 * 179.97438 * 5 4 3 7 7 C 1.39823 * 120.17622 * 294.72570 * 6 5 4 8 8 F 1.35095 * 120.08901 * 359.97438 * 7 6 5 9 9 C 1.38186 * 119.81862 * 179.72599 * 7 6 5 10 10 C 1.38350 * 120.17756 * 0.54385 * 9 7 6 11 11 C 1.50702 * 119.82547 * 179.70055 * 10 9 7 12 12 O 1.42904 * 109.47061 * 270.03151 * 11 10 9 13 13 C 1.38355 * 120.35327 * 359.73373 * 10 9 7 14 14 C 1.38185 * 120.17291 * 359.97438 * 13 10 9 15 15 F 1.35108 * 120.08661 * 179.97438 * 14 13 10 16 16 C 1.40027 * 120.99217 * 0.02562 * 5 4 3 17 17 C 1.35970 * 121.18796 * 359.66716 * 16 5 4 18 18 C 1.41067 * 120.11303 * 0.61537 * 17 16 5 19 19 C 1.40421 * 120.48306 * 179.68583 * 18 17 16 20 20 H 1.07999 * 119.99661 * 154.42165 * 19 18 17 21 21 C 1.40282 * 120.00027 * 334.42940 * 19 18 17 22 22 N 1.30641 * 120.00266 * 334.67481 * 21 19 18 23 23 Si 1.86808 * 120.00013 * 154.68048 * 21 19 18 24 24 H 1.48494 * 109.47171 * 179.97438 * 23 21 19 25 25 H 1.48501 * 109.46965 * 299.99621 * 23 21 19 26 26 H 1.48506 * 109.46750 * 59.99345 * 23 21 19 27 27 H 1.08004 * 120.09485 * 359.94559 * 4 3 2 28 28 H 1.08001 * 119.90832 * 180.25186 * 9 7 6 29 29 H 1.09001 * 109.47115 * 30.02333 * 11 10 9 30 30 H 1.08995 * 109.47086 * 150.02947 * 11 10 9 31 31 H 0.96695 * 113.99557 * 180.02562 * 12 11 10 32 32 H 1.08004 * 119.91438 * 180.02562 * 13 10 9 33 33 H 1.07998 * 119.40014 * 179.97438 * 16 5 4 34 34 H 1.08004 * 119.94400 * 180.30283 * 17 16 5 35 35 H 0.96999 * 120.00139 * 354.20308 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2754 -0.3572 -1.1425 5 6 4.6695 -0.3505 -1.1250 6 6 5.4152 -0.7329 -2.3439 7 6 5.3337 -2.0387 -2.8370 8 9 4.5735 -2.9567 -2.2010 9 6 6.0289 -2.3864 -3.9795 10 6 6.8129 -1.4495 -4.6288 11 6 7.5730 -1.8391 -5.8703 12 8 8.8680 -2.3203 -5.5047 13 6 6.9033 -0.1568 -4.1439 14 6 6.2095 0.2083 -3.0060 15 9 6.2995 1.4709 -2.5337 16 6 5.3743 0.0117 0.0295 17 6 4.7236 0.3745 1.1669 18 6 3.3135 0.3790 1.2049 19 6 2.6336 0.7460 2.3774 20 1 1.6319 1.1455 2.3182 21 6 3.2555 0.5939 3.6256 22 7 4.1980 -0.2972 3.7816 23 14 2.7358 1.6654 5.0649 24 1 3.5392 1.3100 6.2621 25 1 2.9589 3.0936 4.7246 26 1 1.2956 1.4441 5.3520 27 1 2.7463 -0.6399 -2.0407 28 1 5.9638 -3.3936 -4.3639 29 1 7.0298 -2.6231 -6.3979 30 1 7.6784 -0.9699 -6.5196 31 1 9.4141 -2.5894 -6.2559 32 1 7.5171 0.5691 -4.6566 33 1 6.4542 0.0075 0.0146 34 1 5.2874 0.6549 2.0445 35 1 4.4101 -0.9102 3.0604 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244361450.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:34 Heat of formation + Delta-G solvation = -98.008581 kcal Electronic energy + Delta-G solvation = -24550.319264 eV Core-core repulsion = 20533.707347 eV Total energy + Delta-G solvation = -4016.611917 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.92132 -49.89202 -40.37697 -39.55702 -37.48648 -37.12291 -36.21784 -33.38592 -31.92336 -31.35668 -30.89156 -28.16010 -26.10852 -24.41742 -23.70807 -23.28637 -22.16049 -20.26473 -19.18475 -18.52103 -18.29209 -18.25480 -17.05433 -16.92423 -16.72120 -16.59999 -16.32377 -16.22662 -15.63476 -15.41310 -15.27380 -15.03733 -14.79175 -14.45389 -14.32284 -13.89825 -13.71773 -13.58447 -13.50598 -13.19934 -13.05157 -12.90778 -12.61020 -12.47921 -12.11835 -11.98479 -11.86103 -11.59143 -11.09563 -10.91771 -10.07558 -9.81713 -9.75531 -9.55548 -9.31515 -6.74957 -0.18398 -0.00013 0.24912 0.73344 1.47831 1.56750 1.77957 1.87869 2.13841 2.20903 2.29147 2.52990 2.86968 3.32077 3.37665 3.39321 3.46571 3.77329 3.94486 4.00194 4.06622 4.17754 4.31061 4.43357 4.51054 4.75773 4.79637 4.83377 4.89073 4.93913 5.03193 5.14496 5.29486 5.40091 5.48116 5.55781 5.72204 5.80574 5.89386 6.03704 6.42150 6.53737 6.79897 6.99408 7.73096 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.020205 B = 0.003515 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.495352 B = 7963.721952 C = 8452.524681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C 0.303 3.697 3 C -0.209 4.209 4 C 0.015 3.985 5 C -0.212 4.212 6 C -0.086 4.086 7 C 0.107 3.893 8 F -0.140 7.140 9 C -0.136 4.136 10 C -0.049 4.049 11 C 0.122 3.878 12 O -0.589 6.589 13 C -0.135 4.135 14 C 0.110 3.890 15 F -0.137 7.137 16 C -0.025 4.025 17 C -0.224 4.224 18 C 0.117 3.883 19 C -0.495 4.495 20 H 0.074 0.926 21 C 0.010 3.990 22 N -0.769 5.769 23 Si 1.112 2.888 24 H -0.260 1.260 25 H -0.256 1.256 26 H -0.264 1.264 27 H 0.115 0.885 28 H 0.164 0.836 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.404 0.596 32 H 0.166 0.834 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.582 -2.265 -15.743 19.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.199 5.199 2 C -0.006 4.006 3 C -0.214 4.214 4 C -0.006 4.006 5 C -0.214 4.214 6 C -0.088 4.088 7 C 0.087 3.913 8 F -0.118 7.118 9 C -0.154 4.154 10 C -0.049 4.049 11 C 0.045 3.955 12 O -0.399 6.399 13 C -0.153 4.153 14 C 0.091 3.909 15 F -0.116 7.116 16 C -0.044 4.044 17 C -0.243 4.243 18 C 0.111 3.889 19 C -0.521 4.521 20 H 0.092 0.908 21 C -0.212 4.212 22 N -0.389 5.389 23 Si 0.928 3.072 24 H -0.184 1.184 25 H -0.181 1.181 26 H -0.189 1.189 27 H 0.133 0.867 28 H 0.182 0.818 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.255 0.745 32 H 0.184 0.816 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.972 -1.852 -13.549 16.925 hybrid contribution -0.184 -0.473 -1.595 1.673 sum 9.788 -2.325 -15.144 18.181 Atomic orbital electron populations 1.80999 1.12864 1.15245 1.10785 1.25841 0.92787 0.90960 0.91029 1.16802 0.83172 1.23064 0.98411 1.20682 0.92835 0.92254 0.94786 1.17608 0.91682 1.18440 0.93648 1.18898 1.00355 0.92588 0.96913 1.17760 0.94571 0.85328 0.93612 1.91495 1.73786 1.64875 1.81647 1.21244 0.98024 1.02252 0.93927 1.19615 0.96140 0.91546 0.97624 1.21021 0.83454 1.00215 0.90810 1.86519 1.27256 1.86623 1.39540 1.21251 1.00501 0.98492 0.95083 1.17707 0.99294 0.79090 0.94821 1.91499 1.94736 1.37056 1.88263 1.20535 0.98607 0.93672 0.91632 1.20711 0.93138 1.11426 0.99026 1.18738 0.92146 0.86976 0.91047 1.20969 1.03178 1.34651 0.93302 0.90821 1.28617 0.91441 0.97146 1.03999 1.70493 1.21327 1.09928 1.37106 0.83055 0.77463 0.75066 0.71631 1.18388 1.18050 1.18908 0.86694 0.81831 0.89907 0.89770 0.74512 0.81627 0.86850 0.87192 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -25.88 18.54 19.00 0.35 -25.53 16 2 C 0.30 14.88 14.30 88.33 1.26 16.14 16 3 C -0.21 -10.03 5.93 -19.64 -0.12 -10.14 16 4 C 0.02 0.66 9.24 22.75 0.21 0.87 16 5 C -0.21 -8.69 4.73 -19.99 -0.09 -8.78 16 6 C -0.09 -2.94 5.28 -19.95 -0.11 -3.04 16 7 C 0.11 3.29 7.24 22.64 0.16 3.45 16 8 F -0.14 -4.85 16.67 44.97 0.75 -4.10 16 9 C -0.14 -3.08 9.66 22.28 0.22 -2.86 16 10 C -0.05 -0.95 5.51 -19.81 -0.11 -1.06 16 11 C 0.12 1.35 7.16 71.24 0.51 1.86 16 12 O -0.59 -7.79 13.64 -148.98 -2.03 -9.82 16 13 C -0.13 -2.98 9.66 22.29 0.22 -2.76 16 14 C 0.11 3.33 7.24 22.64 0.16 3.49 16 15 F -0.14 -4.57 16.67 44.97 0.75 -3.82 16 16 C -0.03 -1.08 9.38 22.18 0.21 -0.87 16 17 C -0.22 -10.47 7.88 22.44 0.18 -10.29 16 18 C 0.12 5.83 5.46 -19.86 -0.11 5.72 16 19 C -0.50 -25.02 8.49 23.30 0.20 -24.82 16 20 H 0.07 3.82 7.44 -2.91 -0.02 3.80 16 21 C 0.01 0.49 4.94 85.37 0.42 0.91 16 22 N -0.77 -37.26 12.31 21.88 0.27 -36.99 16 23 Si 1.11 39.71 30.01 68.60 2.06 41.77 16 24 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 25 H -0.26 -8.62 7.11 99.48 0.71 -7.91 16 26 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 27 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 28 H 0.16 2.80 8.06 -2.91 -0.02 2.77 16 29 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 30 H 0.08 0.56 8.08 -2.39 -0.02 0.54 16 31 H 0.40 1.07 9.12 -74.06 -0.68 0.39 16 32 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 33 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 34 H 0.11 5.21 6.50 -2.91 -0.02 5.19 16 35 H 0.30 14.84 6.68 -92.71 -0.62 14.22 16 Total: -1.00 -62.27 329.39 6.01 -56.26 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.65 Total: 14.43 kcal Atomic # 6 Polarization: -35.40 SS G_CDS: 3.21 Total: -32.19 kcal Atomic # 7 Polarization: -63.15 SS G_CDS: 0.62 Total: -62.53 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -2.03 Total: -9.82 kcal Atomic # 9 Polarization: -9.42 SS G_CDS: 1.50 Total: -7.92 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.06 Total: 41.77 kcal Total: -62.27 6.01 -56.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244361450.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.754 kcal (2) G-P(sol) polarization free energy of solvation -62.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds