Wall clock time and date at job start Tue Mar 31 2020 11:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39591 * 120.45127 * 107.51074 * 3 2 1 5 5 C 1.37696 * 120.18986 * 179.69414 * 4 3 2 6 6 C 1.39854 * 121.16410 * 0.61380 * 5 4 3 7 7 C 1.48237 * 119.53748 * 179.69107 * 6 5 4 8 8 C 1.39592 * 120.15050 * 114.70435 * 7 6 5 9 9 F 1.35096 * 120.08080 * 359.97397 * 8 7 6 10 10 C 1.38259 * 119.84151 * 179.70017 * 8 7 6 11 11 C 1.38295 * 120.15363 * 0.56896 * 10 8 7 12 12 C 1.50699 * 119.84581 * 179.69897 * 11 10 8 13 13 O 1.42899 * 109.47333 * 270.02880 * 12 11 10 14 14 C 1.38298 * 120.30742 * 359.73218 * 11 10 8 15 15 C 1.38251 * 120.15579 * 359.96459 * 14 11 10 16 16 F 1.35105 * 120.07668 * 180.02562 * 15 14 11 17 17 C 1.38644 * 120.91873 * 359.66616 * 6 5 4 18 18 C 1.40578 * 119.73517 * 0.02562 * 17 6 5 19 19 C 1.40853 * 120.55110 * 180.02562 * 18 17 6 20 20 H 1.07997 * 119.99422 * 150.12437 * 19 18 17 21 21 C 1.40222 * 120.00096 * 330.12282 * 19 18 17 22 22 N 1.30668 * 119.99969 * 161.88296 * 21 19 18 23 23 Si 1.86798 * 120.00365 * 341.88896 * 21 19 18 24 24 H 1.48503 * 109.47280 * 95.38607 * 23 21 19 25 25 H 1.48500 * 109.47181 * 215.39016 * 23 21 19 26 26 H 1.48506 * 109.46959 * 335.38668 * 23 21 19 27 27 H 1.08001 * 119.90925 * 359.97139 * 4 3 2 28 28 H 1.07997 * 119.41873 * 180.28056 * 5 4 3 29 29 H 1.08003 * 119.92326 * 180.27584 * 10 8 7 30 30 H 1.09002 * 109.46980 * 30.02948 * 12 11 10 31 31 H 1.08998 * 109.46786 * 150.02832 * 12 11 10 32 32 H 0.96701 * 114.00114 * 179.97438 * 13 12 11 33 33 H 1.08004 * 119.91615 * 179.97438 * 14 11 10 34 34 H 1.07998 * 120.13112 * 180.02562 * 17 6 5 35 35 H 0.96997 * 119.99970 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2753 0.3630 -1.1476 5 6 4.6522 0.3678 -1.1397 6 6 5.3707 0.0011 0.0028 7 6 6.8526 0.0126 -0.0309 8 6 7.5652 0.9078 0.7688 9 9 6.9059 1.7674 1.5760 10 6 8.9474 0.9089 0.7370 11 6 9.6238 0.0338 -0.0933 12 6 11.1304 0.0455 -0.1275 13 8 11.5771 0.9647 -1.1263 14 6 8.9241 -0.8515 -0.8928 15 6 7.5419 -0.8677 -0.8665 16 9 6.8599 -1.7336 -1.6478 17 6 4.7162 -0.3725 1.1665 18 6 3.3110 -0.3849 1.2029 19 6 2.6284 -0.7611 2.3762 20 1 1.6571 -0.3420 2.5936 21 6 3.2100 -1.6796 3.2617 22 7 2.7748 -1.7677 4.4907 23 14 4.6071 -2.7772 2.6848 24 1 5.9065 -2.1564 3.0474 25 1 4.4942 -4.1064 3.3373 26 1 4.5312 -2.9414 1.2108 27 1 2.7411 0.6448 -2.0429 28 1 5.1868 0.6547 -2.0331 29 1 9.5001 1.5979 1.3584 30 1 11.5135 0.3521 0.8459 31 1 11.4961 -0.9538 -0.3636 32 1 12.5391 1.0243 -1.2038 33 1 9.4587 -1.5319 -1.5391 34 1 5.2837 -0.6530 2.0415 35 1 3.1774 -2.4028 5.1033 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244361842.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:25 Heat of formation + Delta-G solvation = -72.658179 kcal Electronic energy + Delta-G solvation = -24962.130389 eV Core-core repulsion = 20946.617747 eV Total energy + Delta-G solvation = -4015.512641 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.77430 -48.72718 -39.33859 -38.00275 -36.71543 -35.26059 -34.12286 -32.51258 -30.80384 -30.37416 -29.55314 -26.22849 -25.71101 -22.90651 -22.66214 -21.52797 -20.85060 -17.90980 -17.82113 -17.71607 -17.47983 -17.21951 -16.26812 -15.75740 -15.65936 -15.17099 -15.05289 -14.51825 -14.42478 -14.34325 -14.27170 -13.73796 -13.08499 -13.00966 -12.77035 -12.63051 -12.41575 -12.17238 -12.02506 -11.86386 -11.63160 -11.51280 -11.44414 -11.09870 -10.93055 -10.51456 -10.44001 -10.22120 -9.98590 -9.44431 -8.86463 -8.73509 -8.01285 -7.71327 -7.32365 -4.85240 0.79590 1.00155 1.77758 2.43777 2.90406 3.00036 3.11903 3.21670 3.70720 3.81300 3.81553 3.85956 4.20590 4.31247 4.37399 4.60191 4.78414 4.82401 4.96774 5.00995 5.08956 5.18415 5.25923 5.59269 5.71386 5.84742 5.92221 6.01049 6.11251 6.16500 6.30678 6.48215 6.73217 6.81552 6.89585 7.22026 7.25382 7.31099 7.46289 7.67059 7.94906 8.22014 8.36416 8.70170 9.66809 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.015325 B = 0.004737 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.663206 B = 5909.736042 C = 6624.357862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C 0.296 3.704 3 C -0.162 4.162 4 C -0.014 4.014 5 C -0.228 4.228 6 C 0.000 4.000 7 C -0.094 4.094 8 C 0.139 3.861 9 F -0.118 7.118 10 C -0.147 4.147 11 C -0.049 4.049 12 C 0.121 3.879 13 O -0.565 6.565 14 C -0.148 4.148 15 C 0.137 3.863 16 F -0.121 7.121 17 C -0.203 4.203 18 C 0.126 3.874 19 C -0.413 4.413 20 H 0.100 0.900 21 C 0.085 3.915 22 N -0.773 5.773 23 Si 0.903 3.097 24 H -0.263 1.263 25 H -0.281 1.281 26 H -0.234 1.234 27 H 0.109 0.891 28 H 0.104 0.896 29 H 0.142 0.858 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.381 0.619 33 H 0.141 0.859 34 H 0.110 0.890 35 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.033 0.629 -5.852 20.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.173 5.173 2 C -0.014 4.014 3 C -0.168 4.168 4 C -0.035 4.035 5 C -0.247 4.247 6 C -0.001 4.001 7 C -0.096 4.096 8 C 0.119 3.881 9 F -0.096 7.096 10 C -0.166 4.166 11 C -0.050 4.050 12 C 0.043 3.957 13 O -0.371 6.371 14 C -0.167 4.167 15 C 0.117 3.883 16 F -0.099 7.099 17 C -0.222 4.222 18 C 0.120 3.880 19 C -0.439 4.439 20 H 0.118 0.882 21 C -0.140 4.140 22 N -0.394 5.394 23 Si 0.728 3.272 24 H -0.189 1.189 25 H -0.208 1.208 26 H -0.157 1.157 27 H 0.127 0.873 28 H 0.122 0.878 29 H 0.160 0.840 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.229 0.771 33 H 0.159 0.841 34 H 0.128 0.872 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 17.500 0.610 -5.625 18.392 hybrid contribution 1.349 -0.582 0.212 1.485 sum 18.849 0.029 -5.413 19.611 Atomic orbital electron populations 1.81038 1.12603 1.13774 1.09916 1.25643 0.92590 0.91531 0.91650 1.16903 0.83472 1.21004 0.95411 1.20473 0.93385 0.94486 0.95181 1.20035 0.93138 1.14309 0.97244 1.18066 0.87849 0.99233 0.94933 1.19222 0.95338 0.97010 0.98009 1.17362 0.89381 0.89953 0.91407 1.91574 1.81094 1.66952 1.70010 1.20952 0.91989 1.01304 1.02368 1.19111 0.94736 0.95306 0.95836 1.20925 0.89814 0.93158 0.91780 1.86585 1.27315 1.64498 1.58726 1.20925 0.91796 1.02157 1.01815 1.17326 0.89120 0.89985 0.91880 1.91554 1.80008 1.66675 1.71651 1.20947 0.93868 1.10630 0.96753 1.18322 0.90381 0.88946 0.90307 1.19661 1.05093 1.19349 0.99800 0.88242 1.26343 0.97159 0.97084 0.93370 1.69594 1.36792 1.28858 1.04140 0.86400 0.79946 0.78335 0.82562 1.18859 1.20804 1.15689 0.87317 0.87806 0.84036 0.92100 0.92131 0.77125 0.84084 0.87202 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.98 18.54 41.84 0.78 -11.20 16 2 C 0.30 6.93 14.35 -22.47 -0.32 6.60 16 3 C -0.16 -3.65 5.95 -104.12 -0.62 -4.27 16 4 C -0.01 -0.28 9.74 -39.27 -0.38 -0.67 16 5 C -0.23 -4.39 9.45 -39.18 -0.37 -4.76 16 6 C 0.00 0.00 4.70 -105.03 -0.49 -0.49 16 7 C -0.09 -1.65 5.28 -104.78 -0.55 -2.20 16 8 C 0.14 2.23 7.23 -39.07 -0.28 1.94 16 9 F -0.12 -2.08 16.66 2.25 0.04 -2.04 16 10 C -0.15 -1.86 9.66 -39.55 -0.38 -2.24 16 11 C -0.05 -0.56 5.51 -104.58 -0.58 -1.14 16 12 C 0.12 0.92 7.16 36.00 0.26 1.18 16 13 O -0.57 -4.67 13.64 -35.23 -0.48 -5.15 16 14 C -0.15 -1.82 9.66 -39.55 -0.38 -2.20 16 15 C 0.14 2.13 7.23 -39.08 -0.28 1.85 16 16 F -0.12 -2.00 16.66 2.25 0.04 -1.97 16 17 C -0.20 -4.54 6.65 -38.55 -0.26 -4.80 16 18 C 0.13 3.02 5.26 -104.68 -0.55 2.47 16 19 C -0.41 -10.58 9.02 -37.85 -0.34 -10.92 16 20 H 0.10 2.76 7.65 -52.49 -0.40 2.36 16 21 C 0.08 2.08 5.41 -17.30 -0.09 1.98 16 22 N -0.77 -19.20 13.92 55.56 0.77 -18.42 16 23 Si 0.90 19.21 24.53 -169.99 -4.17 15.04 16 24 H -0.26 -5.36 6.72 56.52 0.38 -4.98 16 25 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 26 H -0.23 -5.11 6.86 56.52 0.39 -4.73 16 27 H 0.11 1.84 8.06 -52.49 -0.42 1.41 16 28 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 30 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 31 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 32 H 0.38 1.16 9.12 45.56 0.42 1.57 16 33 H 0.14 1.37 8.06 -52.48 -0.42 0.94 16 34 H 0.11 2.46 4.76 -52.49 -0.25 2.21 16 35 H 0.29 6.50 8.29 -40.82 -0.34 6.16 16 LS Contribution 325.12 15.07 4.90 4.90 Total: -1.00 -28.95 325.12 -5.70 -34.64 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -1.94 Total: 1.87 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -5.63 Total: -17.67 kcal Atomic # 7 Polarization: -31.17 SS G_CDS: 1.55 Total: -29.62 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.48 Total: -5.15 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.08 Total: -4.01 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.17 Total: 15.04 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.95 -5.70 -34.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244361842.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.013 kcal (2) G-P(sol) polarization free energy of solvation -28.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds