Wall clock time and date at job start Tue Mar 31 2020 11:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31571 * 1 3 3 Si 1.86805 * 120.00053 * 2 1 4 4 H 1.48498 * 109.47317 * 270.00552 * 3 2 1 5 5 H 1.48500 * 109.46907 * 30.00672 * 3 2 1 6 6 H 1.48501 * 109.46964 * 150.00537 * 3 2 1 7 7 C 1.38618 * 119.99720 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00264 * 359.97438 * 7 2 1 9 9 O 1.34818 * 119.99623 * 179.97438 * 7 2 1 10 10 C 1.35634 * 116.99538 * 185.05027 * 9 7 2 11 11 C 1.38677 * 120.13611 * 354.39288 * 10 9 7 12 12 C 1.38349 * 120.04769 * 179.97438 * 11 10 9 13 13 F 1.35091 * 119.84139 * 180.02562 * 12 11 10 14 14 C 1.38733 * 120.31556 * 0.02562 * 12 11 10 15 15 C 1.37893 * 120.27452 * 359.67688 * 14 12 11 16 16 C 1.39539 * 119.94530 * 0.60287 * 15 14 12 17 17 C 1.47734 * 120.15693 * 179.69792 * 16 15 14 18 18 C 1.35734 * 125.22670 * 319.72131 * 17 16 15 19 19 C 1.46169 * 106.95710 * 179.97438 * 18 17 16 20 20 C 1.39849 * 133.75898 * 180.36829 * 19 18 17 21 21 C 1.37762 * 119.63489 * 180.14956 * 20 19 18 22 22 F 1.35097 * 119.83528 * 179.73341 * 21 20 19 23 23 C 1.39051 * 120.33274 * 359.46450 * 21 20 19 24 24 C 1.37764 * 120.66783 * 0.24855 * 23 21 20 25 25 C 1.39054 * 119.99374 * 0.02562 * 24 23 21 26 26 N 1.37572 * 125.22430 * 139.72168 * 17 16 15 27 27 H 0.97001 * 125.11547 * 359.97438 * 26 17 16 28 28 H 0.97007 * 119.99833 * 359.97438 * 1 2 3 29 29 H 1.08000 * 119.98427 * 359.96031 * 11 10 9 30 30 H 1.08004 * 119.86045 * 179.97438 * 14 12 11 31 31 H 1.08001 * 120.02766 * 180.31403 * 15 14 12 32 32 H 1.07999 * 126.52305 * 359.97438 * 18 17 16 33 33 H 1.08006 * 120.18535 * 359.91150 * 20 19 18 34 34 H 1.07997 * 119.66542 * 180.27156 * 23 21 20 35 35 H 1.08003 * 120.00394 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4972 2.0466 -1.4000 5 1 1.4472 2.6526 0.7002 6 1 3.5474 1.4401 0.6999 7 6 2.0087 -1.2005 -0.0005 8 1 1.4688 -2.1358 -0.0005 9 8 3.3569 -1.2005 -0.0011 10 6 3.9726 -2.4043 -0.1080 11 6 3.2251 -3.5723 -0.0935 12 6 3.8549 -4.7992 -0.2032 13 9 3.1226 -5.9344 -0.1892 14 6 5.2349 -4.8694 -0.3275 15 6 5.9904 -3.7161 -0.3495 16 6 5.3673 -2.4729 -0.2338 17 6 6.1729 -1.2346 -0.2501 18 6 7.3704 -1.0714 0.3677 19 6 7.8090 0.2956 0.0929 20 6 8.9415 1.0371 0.4443 21 6 9.0607 2.3417 0.0183 22 9 10.1505 3.0634 0.3599 23 6 8.0676 2.9178 -0.7661 24 6 6.9493 2.1976 -1.1249 25 6 6.8052 0.8809 -0.7016 26 7 5.8244 -0.0697 -0.8938 27 1 5.0118 0.0628 -1.4066 28 1 -0.4850 0.8401 0.0004 29 1 2.1506 -3.5243 0.0037 30 1 5.7190 -5.8311 -0.4123 31 1 7.0640 -3.7751 -0.4516 32 1 7.8986 -1.8108 0.9512 33 1 9.7167 0.5905 1.0495 34 1 8.1741 3.9401 -1.0977 35 1 6.1847 2.6556 -1.7349 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245576397.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:38 Heat of formation + Delta-G solvation = -40.077720 kcal Electronic energy + Delta-G solvation = -24850.314537 eV Core-core repulsion = 20836.214690 eV Total energy + Delta-G solvation = -4014.099847 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.67934 -48.54270 -41.06093 -39.38787 -36.95899 -36.24954 -32.73450 -31.95619 -30.98179 -29.77681 -28.75626 -27.65853 -25.63459 -23.45924 -22.15954 -21.96609 -21.25050 -20.14752 -18.41063 -18.17663 -17.64630 -17.09936 -16.27363 -15.79628 -15.52449 -15.41447 -15.31037 -15.27088 -14.31597 -14.28215 -14.15729 -13.94039 -13.76809 -13.50246 -13.29654 -13.09025 -12.86317 -12.57333 -12.43712 -12.38491 -11.65738 -11.52842 -11.19088 -10.97862 -10.91182 -10.78838 -10.55025 -9.86135 -9.69818 -9.19808 -8.66387 -8.09180 -7.71516 -7.31493 -6.73531 -4.42050 0.91075 1.46445 1.60113 1.80295 2.94219 2.94833 3.01928 3.16306 3.30862 3.83569 3.93288 4.04307 4.30197 4.37980 4.67375 4.71973 4.77006 4.92778 5.04104 5.24465 5.33901 5.43964 5.45830 5.51529 5.70505 5.90634 6.02030 6.04853 6.10666 6.25209 6.28019 6.41854 6.54550 6.60395 6.63025 6.85223 6.98701 7.20434 7.27986 7.42246 7.66723 7.74470 8.58407 9.11625 10.32671 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.011470 B = 0.005160 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.487135 B = 5425.074380 C = 7683.804516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.072 3.928 3 Si 0.890 3.110 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.252 1.252 7 C -0.397 4.397 8 H 0.112 0.888 9 O -0.199 6.199 10 C 0.194 3.806 11 C -0.257 4.257 12 C 0.154 3.846 13 F -0.145 7.145 14 C -0.239 4.239 15 C -0.016 4.016 16 C -0.140 4.140 17 C 0.182 3.818 18 C -0.214 4.214 19 C -0.075 4.075 20 C -0.111 4.111 21 C 0.063 3.937 22 F -0.148 7.148 23 C -0.141 4.141 24 C -0.097 4.097 25 C 0.089 3.911 26 N -0.576 5.576 27 H 0.421 0.579 28 H 0.285 0.715 29 H 0.150 0.850 30 H 0.128 0.872 31 H 0.134 0.866 32 H 0.149 0.851 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.091 -0.350 -1.883 13.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.134 4.134 3 Si 0.714 3.286 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.175 1.175 7 C -0.471 4.471 8 H 0.129 0.871 9 O -0.102 6.102 10 C 0.139 3.861 11 C -0.277 4.277 12 C 0.134 3.866 13 F -0.123 7.123 14 C -0.259 4.259 15 C -0.035 4.035 16 C -0.143 4.143 17 C 0.072 3.928 18 C -0.239 4.239 19 C -0.080 4.080 20 C -0.130 4.130 21 C 0.043 3.957 22 F -0.127 7.127 23 C -0.161 4.161 24 C -0.118 4.118 25 C -0.020 4.020 26 N -0.178 5.178 27 H 0.259 0.741 28 H 0.095 0.905 29 H 0.167 0.833 30 H 0.146 0.854 31 H 0.152 0.848 32 H 0.167 0.833 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.804 0.033 -1.910 12.946 hybrid contribution -0.491 0.678 -0.101 0.843 sum 12.313 0.711 -2.011 12.496 Atomic orbital electron populations 1.69628 1.05587 1.29067 1.45427 1.24460 0.95032 0.98787 0.95125 0.86410 0.81178 0.81688 0.79327 1.19504 1.20093 1.17513 1.20813 0.76214 0.97027 1.53082 0.87080 1.83515 1.23265 1.25182 1.78204 1.18747 0.90162 0.85310 0.91903 1.21104 1.02425 0.90364 1.13766 1.17594 0.89093 0.81315 0.98586 1.91452 1.77772 1.49473 1.93643 1.20561 0.91690 0.99269 1.14352 1.20529 0.99170 0.89323 0.94452 1.17243 0.89241 0.90990 1.16786 1.18530 0.93700 0.85452 0.95099 1.21513 0.97366 0.95455 1.09522 1.18823 0.94139 0.94703 1.00374 1.20348 0.98179 0.92312 1.02166 1.17235 0.85734 0.90417 1.02342 1.91447 1.52421 1.77673 1.91147 1.20635 0.93828 1.00606 1.01035 1.19869 0.98539 0.91044 1.02315 1.18266 0.90726 0.91438 1.01545 1.42080 1.19992 1.09878 1.45848 0.74090 0.90495 0.83277 0.85401 0.84842 0.83339 0.84990 0.84848 0.85452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.07 13.96 55.48 0.77 -22.30 16 2 C 0.07 1.85 5.49 -17.52 -0.10 1.75 16 3 Si 0.89 19.56 28.62 -169.99 -4.86 14.69 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.25 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.40 -10.05 9.94 30.87 0.31 -9.74 16 8 H 0.11 2.91 5.44 -52.49 -0.29 2.62 16 9 O -0.20 -4.56 7.06 0.44 0.00 -4.55 16 10 C 0.19 3.94 6.65 -38.68 -0.26 3.68 16 11 C -0.26 -5.06 9.13 -39.38 -0.36 -5.42 16 12 C 0.15 2.67 7.30 -39.36 -0.29 2.38 16 13 F -0.14 -2.49 17.26 2.25 0.04 -2.45 16 14 C -0.24 -3.54 10.01 -39.53 -0.40 -3.94 16 15 C -0.02 -0.23 9.57 -39.22 -0.38 -0.61 16 16 C -0.14 -2.44 5.82 -104.79 -0.61 -3.05 16 17 C 0.18 3.10 6.31 -82.31 -0.52 2.58 16 18 C -0.21 -3.30 10.68 -37.30 -0.40 -3.70 16 19 C -0.08 -1.18 6.35 -105.15 -0.67 -1.85 16 20 C -0.11 -1.55 10.08 -39.15 -0.39 -1.94 16 21 C 0.06 0.88 7.29 -39.45 -0.29 0.59 16 22 F -0.15 -2.04 17.26 2.25 0.04 -2.00 16 23 C -0.14 -1.85 9.99 -39.45 -0.39 -2.24 16 24 C -0.10 -1.38 10.06 -39.45 -0.40 -1.77 16 25 C 0.09 1.44 7.26 -83.86 -0.61 0.83 16 26 N -0.58 -9.95 5.69 -7.28 -0.04 -9.99 16 27 H 0.42 7.29 8.30 -40.82 -0.34 6.95 16 28 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.15 3.13 5.64 -52.49 -0.30 2.83 16 30 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 31 H 0.13 1.52 7.98 -52.49 -0.42 1.10 16 32 H 0.15 1.90 8.06 -52.49 -0.42 1.47 16 33 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 34 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 319.09 15.07 4.81 4.81 Total: -1.00 -26.66 319.09 -7.57 -34.23 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -2.59 Total: 10.00 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -5.74 Total: -22.44 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: 0.73 Total: -32.29 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: 0.00 Total: -4.55 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.08 Total: -4.45 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.86 Total: 14.69 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -26.66 -7.57 -34.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245576397.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.846 kcal (2) G-P(sol) polarization free energy of solvation -26.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds