Wall clock time and date at job start Tue Mar 31 2020 11:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86798 * 120.00097 * 2 1 4 4 H 1.48501 * 109.47139 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47077 * 299.99466 * 3 2 1 6 6 H 1.48497 * 109.47400 * 59.99741 * 3 2 1 7 7 C 1.38622 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99776 * 179.97438 * 7 2 1 9 9 O 1.34808 * 120.00006 * 0.02562 * 7 2 1 10 10 C 1.35634 * 116.99764 * 185.05848 * 9 7 2 11 11 C 1.38674 * 120.13828 * 354.39979 * 10 9 7 12 12 C 1.38336 * 120.05200 * 179.97438 * 11 10 9 13 13 F 1.35099 * 119.84613 * 180.02562 * 12 11 10 14 14 C 1.38737 * 120.31870 * 0.02562 * 12 11 10 15 15 C 1.37885 * 120.27146 * 0.02562 * 14 12 11 16 16 C 1.39541 * 119.94855 * 359.97438 * 15 14 12 17 17 C 1.47727 * 120.15798 * 180.02562 * 16 15 14 18 18 C 1.35713 * 125.23203 * 139.65831 * 17 16 15 19 19 C 1.46204 * 106.95074 * 179.85798 * 18 17 16 20 20 C 1.39814 * 133.77467 * 180.10626 * 19 18 17 21 21 C 1.36579 * 119.79944 * 180.31762 * 20 19 18 22 22 C 1.39041 * 120.50726 * 0.02562 * 21 20 19 23 23 F 1.35093 * 119.68376 * 180.02562 * 22 21 20 24 24 C 1.38002 * 120.63165 * 359.97438 * 22 21 20 25 25 C 1.39085 * 119.79985 * 0.03944 * 24 22 21 26 26 N 1.37659 * 125.23223 * 319.95903 * 17 16 15 27 27 H 0.96996 * 125.10916 * 359.96483 * 26 17 16 28 28 H 0.97002 * 119.99653 * 0.02562 * 1 2 3 29 29 H 1.08004 * 119.97847 * 0.02593 * 11 10 9 30 30 H 1.07998 * 119.86392 * 179.74410 * 14 12 11 31 31 H 1.08008 * 120.02646 * 179.97438 * 15 14 12 32 32 H 1.08004 * 126.52548 * 359.95646 * 18 17 16 33 33 H 1.07999 * 120.09849 * 0.30126 * 20 19 18 34 34 H 1.08003 * 119.74299 * 180.02562 * 21 20 19 35 35 H 1.08004 * 120.10209 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7098 1.3463 0.0006 5 1 1.8912 2.3963 -1.2126 6 1 1.8911 2.3965 1.2124 7 6 2.0089 -1.2005 0.0005 8 1 3.0888 -1.2005 0.0001 9 8 1.3348 -2.3680 0.0005 10 6 2.0694 -3.5031 0.1076 11 6 3.4546 -3.4399 0.0941 12 6 4.2021 -4.5987 0.2039 13 9 5.5514 -4.5323 0.1908 14 6 3.5728 -5.8290 0.3276 15 6 2.1962 -5.9073 0.3416 16 6 1.4312 -4.7455 0.2315 17 6 -0.0439 -4.8240 0.2465 18 6 -0.8676 -3.9559 0.8865 19 6 -2.2366 -4.4040 0.6362 20 6 -3.4949 -3.9300 1.0195 21 6 -4.6204 -4.5917 0.6187 22 6 -4.5251 -5.7343 -0.1677 23 9 -5.6493 -6.3755 -0.5552 24 6 -3.2932 -6.2191 -0.5572 25 6 -2.1342 -5.5608 -0.1599 26 7 -0.7941 -5.7922 -0.3818 27 1 -0.4335 -6.5269 -0.9024 28 1 -0.4850 0.8401 -0.0004 29 1 3.9503 -2.4851 -0.0015 30 1 4.1635 -6.7294 0.4088 31 1 1.7104 -6.8672 0.4376 32 1 -0.5688 -3.0965 1.4685 33 1 -3.5765 -3.0435 1.6309 34 1 -5.5920 -4.2245 0.9150 35 1 -3.2291 -7.1072 -1.1685 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245587858.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:52 Heat of formation + Delta-G solvation = -38.117757 kcal Electronic energy + Delta-G solvation = -24665.491797 eV Core-core repulsion = 20651.476941 eV Total energy + Delta-G solvation = -4014.014856 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.67217 -48.45349 -40.87420 -39.13361 -36.76066 -36.07093 -32.54992 -31.73723 -30.64020 -29.47190 -29.12686 -27.10151 -25.62820 -23.18684 -22.31054 -21.76434 -21.05167 -19.94620 -18.45600 -18.06254 -17.52361 -16.78187 -15.98264 -15.45786 -15.39959 -15.33330 -15.15420 -15.08647 -14.51679 -14.34319 -14.02723 -13.66564 -13.58208 -13.48942 -13.35335 -12.96175 -12.78988 -12.33490 -11.90894 -11.73857 -11.47745 -11.28610 -11.12324 -10.88009 -10.85051 -10.72465 -10.55722 -9.77542 -9.42039 -9.06004 -8.46512 -7.93099 -7.68702 -6.98087 -6.66678 -4.25779 1.09220 1.65439 1.76074 1.96956 3.01755 3.03953 3.09624 3.13883 3.33578 3.78659 4.05022 4.22264 4.59886 4.66793 4.87370 4.90253 4.97088 5.05081 5.22693 5.35806 5.49326 5.56382 5.59154 5.69451 5.87644 6.07759 6.22314 6.24071 6.37378 6.48034 6.56697 6.63765 6.68535 6.75009 6.80284 7.06220 7.15148 7.26649 7.43362 7.47512 7.73890 7.85445 8.76407 9.37694 10.47950 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.011001 B = 0.004636 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.498109 B = 6037.847042 C = 8398.475462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.047 3.953 3 Si 0.942 3.058 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.400 4.400 8 H 0.096 0.904 9 O -0.143 6.143 10 C 0.193 3.807 11 C -0.268 4.268 12 C 0.151 3.849 13 F -0.149 7.149 14 C -0.250 4.250 15 C -0.033 4.033 16 C -0.133 4.133 17 C 0.144 3.856 18 C -0.151 4.151 19 C -0.108 4.108 20 C -0.034 4.034 21 C -0.187 4.187 22 C 0.105 3.895 23 F -0.146 7.146 24 C -0.170 4.170 25 C 0.119 3.881 26 N -0.591 5.591 27 H 0.411 0.589 28 H 0.274 0.726 29 H 0.144 0.856 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.157 0.843 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.126 -8.774 0.898 9.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.160 4.160 3 Si 0.766 3.234 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.475 4.475 8 H 0.114 0.886 9 O -0.043 6.043 10 C 0.135 3.865 11 C -0.288 4.288 12 C 0.132 3.868 13 F -0.127 7.127 14 C -0.270 4.270 15 C -0.052 4.052 16 C -0.135 4.135 17 C 0.039 3.961 18 C -0.175 4.175 19 C -0.113 4.113 20 C -0.053 4.053 21 C -0.207 4.207 22 C 0.084 3.916 23 F -0.125 7.125 24 C -0.191 4.191 25 C 0.011 3.989 26 N -0.195 5.195 27 H 0.248 0.752 28 H 0.084 0.916 29 H 0.161 0.839 30 H 0.140 0.860 31 H 0.139 0.861 32 H 0.174 0.826 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.496 -8.607 0.802 8.998 hybrid contribution 0.801 0.345 -0.492 1.001 sum -1.695 -8.263 0.310 8.440 Atomic orbital electron populations 1.70061 1.05891 1.28153 1.43160 1.25330 0.95905 0.98937 0.95851 0.85627 0.79289 0.79989 0.78502 1.18914 1.19941 1.19852 1.21482 0.92076 0.80516 1.53440 0.88643 1.84019 1.33871 1.11271 1.75104 1.18813 0.88869 0.87466 0.91392 1.20977 0.93889 0.98503 1.15441 1.17552 0.75922 0.94324 0.99009 1.91431 1.30164 1.97364 1.93791 1.20406 0.94782 0.95912 1.15880 1.20507 0.92541 0.96211 0.95901 1.17116 0.88568 0.91473 1.16381 1.18405 0.89869 0.90626 0.97242 1.21885 0.88647 1.01284 1.05652 1.19296 0.94109 0.96266 1.01636 1.20199 0.89703 0.98236 0.97160 1.20487 0.99709 0.96931 1.03556 1.17095 0.81190 0.93563 0.99704 1.91445 1.50094 1.81226 1.89746 1.19656 0.89115 1.03103 1.07272 1.17726 0.83989 0.96991 1.00234 1.41851 1.03562 1.26773 1.47310 0.75229 0.91604 0.83851 0.85979 0.86069 0.82564 0.84946 0.85241 0.85565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.40 13.67 55.48 0.76 -21.64 16 2 C 0.05 1.18 5.49 -17.52 -0.10 1.09 16 3 Si 0.94 19.04 29.55 -169.99 -5.02 14.01 16 4 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 5 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.40 -10.13 9.48 30.87 0.29 -9.84 16 8 H 0.10 2.26 5.21 -52.49 -0.27 1.99 16 9 O -0.14 -3.61 7.94 0.47 0.00 -3.61 16 10 C 0.19 4.21 6.61 -38.68 -0.26 3.95 16 11 C -0.27 -5.45 9.13 -39.38 -0.36 -5.81 16 12 C 0.15 2.75 7.30 -39.36 -0.29 2.47 16 13 F -0.15 -2.62 17.26 2.25 0.04 -2.58 16 14 C -0.25 -4.00 10.01 -39.53 -0.40 -4.40 16 15 C -0.03 -0.52 9.77 -39.22 -0.38 -0.90 16 16 C -0.13 -2.52 5.82 -104.79 -0.61 -3.13 16 17 C 0.14 2.69 6.43 -82.28 -0.53 2.16 16 18 C -0.15 -3.04 9.91 -37.29 -0.37 -3.41 16 19 C -0.11 -1.95 6.36 -105.14 -0.67 -2.62 16 20 C -0.03 -0.55 10.06 -39.59 -0.40 -0.94 16 21 C -0.19 -2.68 9.95 -39.88 -0.40 -3.08 16 22 C 0.10 1.55 7.28 -39.37 -0.29 1.26 16 23 F -0.15 -2.10 17.25 2.25 0.04 -2.06 16 24 C -0.17 -2.48 10.05 -39.35 -0.40 -2.87 16 25 C 0.12 1.97 7.26 -83.90 -0.61 1.36 16 26 N -0.59 -9.28 6.11 -7.28 -0.04 -9.33 16 27 H 0.41 5.08 8.96 -40.82 -0.37 4.72 16 28 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 29 H 0.14 2.94 5.64 -52.48 -0.30 2.64 16 30 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 32 H 0.16 3.44 7.60 -52.48 -0.40 3.04 16 33 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 34 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 35 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 320.01 15.07 4.82 4.82 Total: -1.00 -27.47 320.01 -7.74 -35.21 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -2.58 Total: 9.90 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -5.75 Total: -24.73 kcal Atomic # 7 Polarization: -31.68 SS G_CDS: 0.71 Total: -30.96 kcal Atomic # 8 Polarization: -3.61 SS G_CDS: 0.00 Total: -3.61 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.08 Total: -4.65 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.01 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.47 -7.74 -35.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245587858.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.911 kcal (2) G-P(sol) polarization free energy of solvation -27.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds