Wall clock time and date at job start Tue Mar 31 2020 11:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39068 * 120.56221 * 75.42765 * 3 2 1 5 5 C 1.39423 * 119.79885 * 179.97438 * 4 3 2 6 6 C 1.47913 * 119.50331 * 180.02562 * 5 4 3 7 7 C 1.39853 * 120.17355 * 294.72211 * 6 5 4 8 8 F 1.35098 * 120.08570 * 0.02562 * 7 6 5 9 9 C 1.38163 * 119.81917 * 179.81065 * 7 6 5 10 10 C 1.38372 * 120.17759 * 0.44613 * 9 7 6 11 11 C 1.38326 * 120.35278 * 359.78905 * 10 9 7 12 12 C 1.50701 * 119.91325 * 179.97438 * 11 10 9 13 13 O 1.42903 * 109.47069 * 0.02562 * 12 11 10 14 14 C 1.38212 * 120.17656 * 359.97438 * 11 10 9 15 15 F 1.35104 * 120.08595 * 179.97438 * 14 11 10 16 16 C 1.40033 * 120.99516 * 0.02562 * 5 4 3 17 17 C 1.35975 * 121.18672 * 0.02562 * 16 5 4 18 18 C 1.41060 * 120.11391 * 0.02562 * 17 16 5 19 19 C 1.40417 * 120.48552 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00232 * 204.73219 * 19 18 17 21 21 C 1.40286 * 120.00157 * 24.72886 * 19 18 17 22 22 N 1.30646 * 120.00100 * 17.52543 * 21 19 18 23 23 Si 1.86799 * 120.00337 * 197.52953 * 21 19 18 24 24 H 1.48499 * 109.47168 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47481 * 119.99574 * 23 21 19 26 26 H 1.48498 * 109.47220 * 239.99872 * 23 21 19 27 27 H 1.07994 * 120.09803 * 0.27374 * 4 3 2 28 28 H 1.07997 * 119.90998 * 180.18690 * 9 7 6 29 29 H 1.08001 * 119.82244 * 179.75978 * 10 9 7 30 30 H 1.09007 * 109.47383 * 120.01811 * 12 11 10 31 31 H 1.08997 * 109.47725 * 240.02229 * 12 11 10 32 32 H 0.96700 * 113.99874 * 179.97438 * 13 12 11 33 33 H 1.07999 * 119.40901 * 180.02562 * 16 5 4 34 34 H 1.08003 * 119.94378 * 179.97438 * 17 16 5 35 35 H 0.96996 * 120.00879 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2753 -0.3003 -1.1590 5 6 4.6694 -0.2945 -1.1411 6 6 5.4151 -0.6150 -2.3777 7 6 5.3336 -1.8948 -2.9359 8 9 4.5726 -2.8432 -2.3473 9 6 6.0301 -2.1851 -4.0933 10 6 6.8139 -1.2164 -4.6949 11 6 6.9035 0.0503 -4.1463 12 6 7.7606 1.0976 -4.8095 13 8 8.3711 0.5441 -5.9770 14 6 6.2092 0.3580 -2.9916 15 9 6.2985 1.5956 -2.4570 16 6 5.3743 0.0102 0.0298 17 6 4.7237 0.3094 1.1857 18 6 3.3136 0.3166 1.2227 19 6 2.6337 0.6239 2.4122 20 1 1.6296 0.2589 2.5700 21 6 3.2587 1.4049 3.3957 22 7 4.3054 2.1248 3.0906 23 14 2.5947 1.4155 5.1417 24 1 1.4106 0.5233 5.2264 25 1 3.6455 0.9339 6.0740 26 1 2.1996 2.7981 5.5127 27 1 2.7462 -0.5331 -2.0712 28 1 5.9659 -3.1719 -4.5272 29 1 7.3590 -1.4507 -5.5974 30 1 7.1409 1.9485 -5.0924 31 1 8.5345 1.4264 -4.1159 32 1 8.9383 1.1640 -6.4556 33 1 6.4542 0.0076 0.0146 34 1 5.2875 0.5410 2.0773 35 1 4.7379 2.6646 3.7707 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245852207.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:37 Heat of formation + Delta-G solvation = -77.245456 kcal Electronic energy + Delta-G solvation = -24676.480243 eV Core-core repulsion = 20660.768682 eV Total energy + Delta-G solvation = -4015.711561 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.60292 -48.53967 -39.00778 -37.78019 -36.63849 -35.15254 -34.35009 -31.84188 -30.96565 -29.96911 -29.08056 -25.88266 -25.76733 -22.76550 -22.35991 -21.67600 -20.45325 -18.06416 -17.89529 -17.64300 -17.03486 -16.38493 -15.89323 -15.55214 -15.39332 -15.14400 -15.06617 -14.62892 -14.41469 -14.03021 -13.98880 -13.67728 -13.09402 -12.92119 -12.71937 -12.17229 -12.15417 -11.94306 -11.78226 -11.73841 -11.52359 -11.41385 -11.36220 -11.14233 -10.80080 -10.60354 -10.44450 -10.00364 -9.91404 -9.61471 -8.58742 -8.38983 -7.82320 -7.61122 -7.25018 -4.81317 1.12827 1.21533 2.15625 2.52958 2.87035 2.92164 2.95231 3.53745 3.62458 3.86408 3.89305 4.08968 4.21170 4.39083 4.61190 4.79020 5.00312 5.07458 5.16920 5.27631 5.29748 5.43164 5.54935 5.90534 6.06098 6.09393 6.17535 6.22408 6.30419 6.34508 6.59102 6.74876 6.91889 6.98769 7.14897 7.36659 7.41114 7.58156 7.70087 7.78939 8.14338 8.32688 8.47855 8.78965 9.62869 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.018025 B = 0.003779 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.037058 B = 7407.684098 C = 8209.215673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C 0.301 3.699 3 C -0.189 4.189 4 C 0.010 3.990 5 C -0.216 4.216 6 C -0.058 4.058 7 C 0.124 3.876 8 F -0.126 7.126 9 C -0.169 4.169 10 C -0.060 4.060 11 C -0.144 4.144 12 C 0.125 3.875 13 O -0.569 6.569 14 C 0.130 3.870 15 F -0.123 7.123 16 C -0.045 4.045 17 C -0.165 4.165 18 C 0.157 3.843 19 C -0.418 4.418 20 H 0.089 0.911 21 C 0.074 3.926 22 N -0.752 5.752 23 Si 0.917 3.083 24 H -0.254 1.254 25 H -0.265 1.265 26 H -0.268 1.268 27 H 0.098 0.902 28 H 0.137 0.863 29 H 0.144 0.856 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.383 0.617 33 H 0.093 0.907 34 H 0.127 0.873 35 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.968 -1.530 -9.867 14.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.186 5.186 2 C -0.009 4.009 3 C -0.195 4.195 4 C -0.011 4.011 5 C -0.217 4.217 6 C -0.060 4.060 7 C 0.105 3.895 8 F -0.104 7.104 9 C -0.188 4.188 10 C -0.078 4.078 11 C -0.145 4.145 12 C 0.047 3.953 13 O -0.375 6.375 14 C 0.110 3.890 15 F -0.101 7.101 16 C -0.064 4.064 17 C -0.184 4.184 18 C 0.152 3.848 19 C -0.444 4.444 20 H 0.107 0.893 21 C -0.150 4.150 22 N -0.373 5.373 23 Si 0.739 3.261 24 H -0.178 1.178 25 H -0.189 1.189 26 H -0.193 1.193 27 H 0.117 0.883 28 H 0.155 0.845 29 H 0.162 0.838 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.230 0.770 33 H 0.111 0.889 34 H 0.145 0.855 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.014 -1.852 -9.523 13.243 hybrid contribution 0.457 0.714 0.795 1.162 sum 9.470 -1.138 -8.728 12.929 Atomic orbital electron populations 1.81020 1.12654 1.14897 1.10062 1.25714 0.92637 0.91087 0.91437 1.16694 0.83270 1.24290 0.95242 1.20414 0.92211 0.93524 0.94973 1.17334 0.91746 1.20812 0.91820 1.18869 0.98898 0.91118 0.97130 1.17658 0.93446 0.85565 0.92872 1.91522 1.73182 1.62316 1.83403 1.21097 1.00301 1.01384 0.95987 1.20559 0.96962 0.90711 0.99532 1.19594 1.01802 0.96980 0.96111 1.20692 0.94744 0.93167 0.86661 1.86399 1.67126 1.43093 1.40860 1.17270 0.98762 0.80560 0.92390 1.91522 1.94511 1.38550 1.85561 1.20334 0.97514 0.96368 0.92230 1.20870 0.93700 1.06088 0.97773 1.18487 0.91588 0.85407 0.89355 1.19871 1.01611 1.24118 0.98821 0.89288 1.26191 0.93910 0.92921 1.01974 1.69724 1.15567 1.15685 1.36371 0.86079 0.80519 0.79663 0.79809 1.17758 1.18920 1.19275 0.88349 0.84543 0.83782 0.91957 0.91948 0.76950 0.88887 0.85492 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.40 18.54 41.84 0.78 -11.62 16 2 C 0.30 7.20 14.29 -22.47 -0.32 6.88 16 3 C -0.19 -4.43 5.93 -104.27 -0.62 -5.05 16 4 C 0.01 0.21 9.24 -38.83 -0.36 -0.15 16 5 C -0.22 -4.44 4.73 -104.82 -0.50 -4.93 16 6 C -0.06 -1.04 5.28 -104.75 -0.55 -1.59 16 7 C 0.12 2.01 7.24 -39.01 -0.28 1.73 16 8 F -0.13 -2.20 16.67 2.25 0.04 -2.17 16 9 C -0.17 -2.21 10.01 -39.56 -0.40 -2.60 16 10 C -0.06 -0.74 9.37 -39.50 -0.37 -1.11 16 11 C -0.14 -1.93 5.88 -104.60 -0.62 -2.55 16 12 C 0.12 1.30 7.01 36.01 0.25 1.55 16 13 O -0.57 -5.08 12.13 -35.23 -0.43 -5.50 16 14 C 0.13 2.10 7.18 -39.01 -0.28 1.82 16 15 F -0.12 -2.13 16.19 2.25 0.04 -2.09 16 16 C -0.05 -0.96 9.38 -39.72 -0.37 -1.33 16 17 C -0.17 -3.79 8.63 -39.32 -0.34 -4.13 16 18 C 0.16 3.81 5.73 -104.61 -0.60 3.21 16 19 C -0.42 -10.11 8.56 -37.99 -0.33 -10.43 16 20 H 0.09 2.18 7.37 -52.49 -0.39 1.80 16 21 C 0.07 1.66 5.15 -17.29 -0.09 1.57 16 22 N -0.75 -16.91 10.95 55.57 0.61 -16.30 16 23 Si 0.92 16.83 29.60 -169.99 -5.03 11.80 16 24 H -0.25 -4.79 7.11 56.52 0.40 -4.39 16 25 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 26 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 27 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 28 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 29 H 0.14 1.55 6.99 -52.49 -0.37 1.18 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.38 1.52 9.12 45.56 0.42 1.94 16 33 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.13 2.93 6.17 -52.48 -0.32 2.60 16 35 H 0.29 5.83 8.29 -40.82 -0.34 5.49 16 LS Contribution 327.40 15.07 4.93 4.93 Total: -1.00 -27.16 327.40 -6.74 -33.90 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -1.91 Total: 4.16 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -5.76 Total: -17.11 kcal Atomic # 7 Polarization: -29.30 SS G_CDS: 1.38 Total: -27.92 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.43 Total: -5.50 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.07 Total: -4.26 kcal Atomic # 14 Polarization: 16.83 SS G_CDS: -5.03 Total: 11.80 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.16 -6.74 -33.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245852207.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.341 kcal (2) G-P(sol) polarization free energy of solvation -27.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds